Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Forward (+)

18889473 .. 18891838

Gene Structure 2366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTTCTCAACCTCCCTTTAAGACAAATTTCTGCTCGATTTTCGGAAGCTCATTTCCAAATTCAACTAGTGAGAGCAATACAAACACATCAACTATCCAAACCTCAGGCATAAAGCTTCCTGTGATCGATCTCAGCCATCTAACTAGTGGTGAGGAGGTCAAACGCAAAAGATGTGTGAAACAAATGGTTGCAGCTGCGAAAGAGTGGGGATTTTTTCAAATTGTGAACCATGGAATTCCCAAAGACGTCTTTGAGATGATGCTCCTCGAAGAGAAGAAACTCTTTGACCAACCTTTTTCTGTGAAAGTCAGAGAACGTTTTTCGGACTTATCGAAGAATAGTTACCGTTGGGGAAACCCTAGCGCCACTTCTCCCGCTCAGTACTCCGTTTCGGAAGCGTTTCACATCATTCTTTCAGAGGTTTCAAGGATTTCTGATGATCGCAACAACCTCAGAACAATCGTTGAAACGTATGTGCAAGAGATAGCTCGAGTGGCACAAATGATATGTGAAATACTGGGGAAACAAGTGAACGTGAGTTCGGAGTATTTCGAAAACATTTTTGAGCTTGAAAACAGTTTTCTAAGGCTCAATAAGTACCATCCTAGTGTTTTTGGTTCTGAAGTGTTTGGTTTGGTTCCTCATACCGATACAAGTTTTCTCACTATACTCTCTCAAGATCAAATCGGAGGGTTAGAATTGGAAAATAATGGACAATGGATCAGCGTAAAACCTTGCTTGGAAGCCCTTACAGTCAACATTGGGGATATGTTTCAGGCACTGAGTAATGGAGTGTACCAAAGCGTGAGACATAGAGTGATTTCTCCAGCAAATATCGAGAGGATGTCAATAGCTTTCTTCGTATGTCCTTATCTCGAAACTGAGATCGATTGCTTTGGGTATCCAAAGAAGTATAGAAGATTCAGTTTCAGAGAGTACAAAGAGCAGAGTGAACATGATGTTAAAGAAACTGGTGATAAGGTAGGCTTGTCCAGGTTTCTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

336

Amino Acids

38.29

Weight (kDa)

6.04

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 138	1.2e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	193 - 291	5.6e-27	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AccBSI	CCGCTC	1 cut(s)	380
AciI	CCGC	1 cut(s)	378
AclI	AACGTT	1 cut(s)	319
AclWI	GGATC	1 cut(s)	731
AcsI	RAATTY	3 cut(s)	28, 61, 237
AcuI	CTGAAG	1 cut(s)	645
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	4 cut(s)	386, 602, 800, 941
AgsI	TTSAA	5 cut(s)	66, 221, 429, 470, 575
AhlI	ACTAGT	2 cut(s)	68, 146
AjnI	CCWGG	1 cut(s)	995
AluBI	AGCT	6 cut(s)	51, 118, 197, 491, 571, 857
AluI	AGCT	6 cut(s)	51, 118, 197, 491, 571, 857
Alw26I	GTCTC	1 cut(s)	805
AlwI	GGATC	1 cut(s)	731
AlwNI	CAGNNNCTG	1 cut(s)	784
Ama87I	CYCGRG	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	194, 197
ApoI	RAATTY	3 cut(s)	28, 61, 237
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	164, 989
AsuII	TTCGAA	1 cut(s)	555
AvaI	CYCGRG	1 cut(s)	492
AxyI	CCTNAGG	1 cut(s)	106
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BbvI	GCAGC	2 cut(s)	184, 206
BccI	CCATC	2 cut(s)	147, 612
BciT130I	CCWGG	1 cut(s)	997
BciVI	GTATCC	1 cut(s)	915
BcoDI	GTCTC	1 cut(s)	805
BcuI	ACTAGT	2 cut(s)	68, 146
BfaI	CTAG	4 cut(s)	69, 147, 363, 609
BfoI	RGCGCY	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	915
BisI	GCNGC	2 cut(s)	195, 198
BlsI	GCNGC	2 cut(s)	196, 199
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	997
BmeT110I	CYCGRG	1 cut(s)	492
BmiI	GGNNCC	1 cut(s)	642
BmrFI	CCNGG	1 cut(s)	997
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	663
Bsa29I	ATCGAT	2 cut(s)	129, 891
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	525, 979
Bse21I	CCTNAGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	997
BseCI	ATCGAT	2 cut(s)	129, 891
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	2 cut(s)	604, 852
BseMII	CTCAG	6 cut(s)	120, 148, 395, 469, 776, 876
BseNI	ACTGG	2 cut(s)	525, 979
BseRI	GAGGAG	2 cut(s)	170, 257
BseXI	GCAGC	2 cut(s)	184, 206
BshVI	ATCGAT	2 cut(s)	129, 891
BsiHKCI	CYCGRG	1 cut(s)	492
BsmAI	GTCTC	1 cut(s)	805
BsoBI	CYCGRG	1 cut(s)	492
Bsp119I	TTCGAA	1 cut(s)	555
Bsp143I	GATC	6 cut(s)	126, 130, 442, 682, 723, 888
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	1 cut(s)	378
BspCNI	CTCAG	6 cut(s)	119, 147, 394, 468, 777, 877
BspDI	ATCGAT	2 cut(s)	129, 891
BspLI	GGNNCC	1 cut(s)	642
BspPI	GGATC	1 cut(s)	731
BspT104I	TTCGAA	1 cut(s)	555
BsrBI	CCGCTC	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	525, 979
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	6 cut(s)	126, 130, 442, 682, 723, 888
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	997
Bst4CI	ACNGT	3 cut(s)	350, 581, 757
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	249
BstBI	TTCGAA	1 cut(s)	555
BstDEI	CTNAG	7 cut(s)	106, 134, 381, 455, 587, 785, 885
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	604, 852
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	6 cut(s)	129, 133, 445, 685, 726, 891
BstMAI	GTCTC	1 cut(s)	805
BstMBI	GATC	6 cut(s)	126, 130, 442, 682, 723, 888
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	997
BstSCI	CCNGG	1 cut(s)	995
BstV1I	GCAGC	2 cut(s)	184, 206
Bsu15I	ATCGAT	2 cut(s)	129, 891
Bsu36I	CCTNAGG	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	915
BsuTUI	ATCGAT	2 cut(s)	129, 891
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	604, 852
BtsIMutI	CAGTG	1 cut(s)	782
CaiI	CAGNNNCTG	1 cut(s)	784
CfoI	GCGC	1 cut(s)	368
ClaI	ATCGAT	2 cut(s)	129, 891
Csp6I	GTAC	4 cut(s)	385, 601, 799, 940
CviAII	CATG	2 cut(s)	233, 959
CviQI	GTAC	4 cut(s)	385, 601, 799, 940
DdeI	CTNAG	7 cut(s)	106, 134, 381, 455, 587, 785, 885
DpnI	GATC	6 cut(s)	128, 132, 444, 684, 725, 890
DpnII	GATC	6 cut(s)	126, 130, 442, 682, 723, 888
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	645
Eco81I	CCTNAGG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	492
EcoRI	GAATTC	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	995
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	236, 962
FalI	AAGNNNNNCTT	4 cut(s)	269, 301, 974, 1006
FatI	CATG	2 cut(s)	232, 958
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	195, 198
FokI	GGATG	2 cut(s)	591, 859
Fsp4HI	GCNGC	2 cut(s)	195, 198
FspBI	CTAG	4 cut(s)	69, 147, 363, 609
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	2 cut(s)	195, 198
GsuI	CTGGAG	1 cut(s)	813
HaeII	RGCGCY	1 cut(s)	369
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	236, 962
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	924
HphI	GGTGA	2 cut(s)	164, 989
Hpy166II	GTNNAC	5 cut(s)	229, 535, 760, 799, 956
Hpy188III	TCNNGA	3 cut(s)	680, 841, 878
Hpy8I	GTNNAC	5 cut(s)	229, 535, 760, 799, 956
HpyCH4III	ACNGT	3 cut(s)	350, 581, 757
HpyCH4IV	ACGT	4 cut(s)	249, 319, 473, 537
HpyCH4V	TGCA	2 cut(s)	194, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	7 cut(s)	106, 134, 381, 455, 587, 785, 885
HpySE526I	ACGT	4 cut(s)	249, 319, 473, 537
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	236, 962
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	6 cut(s)	126, 130, 442, 682, 723, 888
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	7 cut(s)	93, 135, 506, 764, 843, 960, 982
Lsp1109I	GCAGC	2 cut(s)	184, 206
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	4 cut(s)	69, 147, 363, 609
MaeII	ACGT	4 cut(s)	249, 319, 473, 537
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	6 cut(s)	128, 132, 444, 684, 725, 890
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	6 cut(s)	126, 130, 442, 682, 723, 888
MboII	GAAGA	5 cut(s)	284, 289, 349, 853, 933
MluCI	AATT	5 cut(s)	28, 61, 222, 237, 701
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	2 cut(s)	21, 966
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	997
MvaI	CCWGG	1 cut(s)	997
MwoI	GCNNNNNNNGC	1 cut(s)	497
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	6 cut(s)	126, 130, 442, 682, 723, 888
NlaIII	CATG	2 cut(s)	236, 962
NlaIV	GGNNCC	1 cut(s)	642
NspV	TTCGAA	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	924
PkrI	GCNGC	2 cut(s)	196, 199
Psp1406I	AACGTT	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	995
PspGI	CCWGG	1 cut(s)	995
PspN4I	GGNNCC	1 cut(s)	642
PspXI	VCTCGAGB	1 cut(s)	492
PstNI	CAGNNNCTG	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	4 cut(s)	386, 602, 800, 941
RsaNI	GTAC	4 cut(s)	385, 601, 799, 940
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	2 cut(s)	21, 966
SatI	GCNGC	2 cut(s)	195, 198
Sau3AI	GATC	6 cut(s)	126, 130, 442, 682, 723, 888
ScaI	AGTACT	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	997
SfaNI	GCATC	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	555
SlaI	CTCGAG	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	2 cut(s)	492, 678
SmoI	CTYRAG	2 cut(s)	492, 678
SpeI	ACTAGT	2 cut(s)	68, 146
Sse9I	AATT	5 cut(s)	28, 61, 222, 237, 701
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	4 cut(s)	69, 147, 363, 609
StyD4I	CCNGG	1 cut(s)	995
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	3 cut(s)	350, 581, 757
TaiI	ACGT	4 cut(s)	252, 322, 476, 540
TaqI	TCGA	9 cut(s)	38, 129, 270, 335, 493, 555, 840, 879, 891
TasI	AATT	5 cut(s)	28, 61, 222, 237, 701
TatI	WGTACW	2 cut(s)	384, 939
TfiI	GAWTC	1 cut(s)	924
Tru1I	TTAA	2 cut(s)	21, 966
Tru9I	TTAA	2 cut(s)	21, 966
TscAI	CASTG	1 cut(s)	789
TseI	GCWGC	2 cut(s)	194, 197
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	789
XapI	RAATTY	3 cut(s)	28, 61, 237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	492
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	4 cut(s)	69, 147, 363, 609
ZraI	GACGTC	1 cut(s)	250
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.