Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Reverse (-)

12733957 .. 12740965

Gene Structure 7009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G204600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGATTTTGAGCCTCCATTTCAAGGAACCTGCAAGACCCTCTTGCAAAATCCCACCCATTATCATGATAAGCTTTCTGATGTTGACGAATGTGAGCTGCCTGTGATCGATCTTAACAATCTAAATTTTGGGCATACAGAGAGAGAAAAGATTGTGAGTGAAGTGGCTCAAGCTGCAAGCCAATGGGGTTTCTTTCAAGTTGTGAATCATGGGGTTTCACAGGAAGTTGTAAACAACATGCAATATGAGCAAAAGAGGCTATTTCGTCAGCCTTTTCCGAAAAAAGTTGAAAATAATCTTTTGAATTTATCTGCCAATAGTTACCGTTGGGGTAACCCAGAAGCTACTTGTTTGAAGCAGTTCTCATGGTCAGAAGCCTTTCATATATCTACCACAGAAATTCCAACAATGAGGACTGAGCACAAGAGCCTTAGGTCAACAATTGAAGCATTCGTGAAGACTTTGTCTGGTTTGGCTAGAAGCATAGCTGAAATTCTGGCACAGCCTTTGGGAATCAAACCCGTTTATTTCGAAGAGAACTGTCCGGCGAGAACAAGTTATCTTCGATTAAATCGATATGCTCCATGTCCATTTTCTTCCCAAGTGTATGGCCTCATCTCTCACACTGATACTGATTTCCTAACCATAGTGTACCAGGACCAAGTTGGAGGTCTCGAAATATATAAAGATGGAAGATGGTTGGGTGTTAAACCTAATCCTGAAGCCCTGATTGTCAACATTGGGGACTTCTTTGAGGCCTTGAGCAATGGCATTTACAAAAGCATCAAGCACCGAGTGGTTACCAGCCAAAAAGTTGAGAGGTTTTCTGTGGCCTACTTCTACTGTCCTTCCTACGATGTGGTCATCAAGAGCTGTGGTAAGCCAGCACTTTATAGGCAGTTCACGTTGAGGGAATATAAACAGCAAACTCAAATTGACGTTCAGGAAATTGAAGAGAATACATTTTTACAAAGCCCAAAGATGAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

331

Amino Acids

37.98

Weight (kDa)

6.47

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	38
AcsI	RAATTY	4 cut(s)	124, 304, 399, 492
AcuI	CTGAAG	1 cut(s)	741
AdeI	CACNNNGTG	1 cut(s)	796
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	7 cut(s)	23, 197, 290, 304, 355, 446, 953
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	6 cut(s)	73, 97, 173, 344, 488, 873
AluI	AGCT	6 cut(s)	73, 97, 173, 344, 488, 873
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	677
AoxI	GGCC	3 cut(s)	610, 756, 831
ApeKI	GCWGC	2 cut(s)	97, 173
ApoI	RAATTY	4 cut(s)	124, 304, 399, 492
Asp700I	GAANNNNTTC	2 cut(s)	359, 378
AspS9I	GGNCC	1 cut(s)	658
AsuII	TTCGAA	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	658
AxyI	CCTNAGG	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	84, 160
BccI	CCATC	2 cut(s)	683, 690
BciT130I	CCWGG	1 cut(s)	656
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	98, 174
BlsI	GCNGC	2 cut(s)	99, 175
Bme1390I	CCNGG	1 cut(s)	656
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	656
BmsI	GCATC	1 cut(s)	792
BpiI	GAAGAC	1 cut(s)	464
Bpu14I	TTCGAA	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	153, 781
Bsa29I	ATCGAT	2 cut(s)	108, 574
BsaI	GGTCTC	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	772
BseBI	CCWGG	1 cut(s)	656
BseCI	ATCGAT	2 cut(s)	108, 574
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	772
BseMII	CTCAG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	84, 160
BshFI	GGCC	3 cut(s)	612, 758, 833
BshVI	ATCGAT	2 cut(s)	108, 574
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	758
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	3 cut(s)	612, 758, 833
Bso31I	GGTCTC	1 cut(s)	677
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	105, 109
BspANI	GGCC	3 cut(s)	612, 758, 833
BspCNI	CTCAG	1 cut(s)	409
BspDI	ATCGAT	2 cut(s)	108, 574
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	531
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	772
BssMI	GATC	2 cut(s)	105, 109
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	3 cut(s)	326, 542, 845
Bst6I	CTCTTC	2 cut(s)	528, 948
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	178, 885
BstDEI	CTNAG	2 cut(s)	417, 431
BstEII	GGTNACC	2 cut(s)	332, 799
BstKTI	GATC	2 cut(s)	108, 112
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	2 cut(s)	105, 109
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 247, 256
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	241
BstPI	GGTNACC	2 cut(s)	332, 799
BstSCI	CCNGG	1 cut(s)	654
BstV1I	GCAGC	2 cut(s)	84, 160
BstV2I	GAAGAC	1 cut(s)	464
BstXI	CCANNNNNNTGG	1 cut(s)	608
Bsu15I	ATCGAT	2 cut(s)	108, 574
Bsu36I	CCTNAGG	1 cut(s)	431
BsuRI	GGCC	3 cut(s)	612, 758, 833
BsuTUI	ATCGAT	2 cut(s)	108, 574
BtsIMutI	CAGTG	1 cut(s)	624
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	178, 885
CciI	TCATGA	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	658
ClaI	ATCGAT	2 cut(s)	108, 574
Csp6I	GTAC	1 cut(s)	652
CspCI	CAANNNNNGTGG	2 cut(s)	856, 891
CviAII	CATG	5 cut(s)	65, 209, 238, 366, 585
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	2 cut(s)	417, 431
DpnI	GATC	2 cut(s)	107, 111
DpnII	GATC	2 cut(s)	105, 109
DraIII	CACNNNGTG	1 cut(s)	796
Eam1104I	CTCTTC	2 cut(s)	528, 948
EarI	CTCTTC	2 cut(s)	528, 948
Eco147I	AGGCCT	1 cut(s)	758
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	741
Eco81I	CCTNAGG	1 cut(s)	431
Eco91I	GGTNACC	2 cut(s)	332, 799
EcoO65I	GGTNACC	2 cut(s)	332, 799
EcoRII	CCWGG	1 cut(s)	654
FaeI	CATG	5 cut(s)	68, 212, 241, 369, 588
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	5 cut(s)	64, 208, 237, 365, 584
Fnu4HI	GCNGC	2 cut(s)	98, 174
Fsp4HI	GCNGC	2 cut(s)	98, 174
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	2 cut(s)	98, 174
HaeIII	GGCC	3 cut(s)	612, 758, 833
HapII	CCGG	1 cut(s)	545
Hin1II	CATG	5 cut(s)	68, 212, 241, 369, 588
HincII	GTYRAC	3 cut(s)	85, 438, 736
HindII	GTYRAC	3 cut(s)	85, 438, 736
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	205, 513
HpaII	CCGG	1 cut(s)	545
Hpy166II	GTNNAC	6 cut(s)	85, 232, 438, 652, 736, 903
Hpy188I	TCNGA	3 cut(s)	79, 279, 373
Hpy188III	TCNNGA	6 cut(s)	65, 454, 674, 719, 868, 944
Hpy8I	GTNNAC	6 cut(s)	85, 232, 438, 652, 736, 903
HpyAV	CCTTC	1 cut(s)	858
HpyCH4III	ACNGT	3 cut(s)	326, 542, 845
HpyCH4IV	ACGT	2 cut(s)	905, 939
HpyCH4V	TGCA	4 cut(s)	33, 46, 176, 241
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 247, 256
HpyF3I	CTNAG	2 cut(s)	417, 431
HpySE526I	ACGT	2 cut(s)	905, 939
Hsp92II	CATG	5 cut(s)	68, 212, 241, 369, 588
Kzo9I	GATC	2 cut(s)	105, 109
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	2 cut(s)	84, 160
LweI	GCATC	1 cut(s)	792
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	2 cut(s)	905, 939
MaeIII	GTNAC	3 cut(s)	320, 332, 799
MalI	GATC	2 cut(s)	107, 111
MboI	GATC	2 cut(s)	105, 109
MboII	GAAGA	6 cut(s)	469, 545, 554, 588, 705, 965
MfeI	CAATTG	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	7 cut(s)	124, 304, 399, 441, 492, 933, 948
MmeI	TCCRAC	2 cut(s)	428, 646
MroXI	GAANNNNTTC	2 cut(s)	359, 378
MseI	TTAA	3 cut(s)	114, 569, 708
MslI	CAYNNNNRTG	1 cut(s)	63
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	656
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	3 cut(s)	173, 247, 256
NdeII	GATC	2 cut(s)	105, 109
NlaIII	CATG	5 cut(s)	68, 212, 241, 369, 588
NlaIV	GGNNCC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	531
PagI	TCATGA	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PctI	GAATGC	1 cut(s)	449
PdmI	GAANNNNTTC	2 cut(s)	359, 378
PfeI	GAWTC	2 cut(s)	205, 513
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	99, 175
Psp6I	CCWGG	1 cut(s)	654
PspEI	GGTNACC	2 cut(s)	332, 799
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	658
PsyI	GACNNNGTC	1 cut(s)	463
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	114, 569, 708
SatI	GCNGC	2 cut(s)	98, 174
Sau3AI	GATC	2 cut(s)	105, 109
Sau96I	GGNCC	1 cut(s)	658
ScrFI	CCNGG	1 cut(s)	656
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	1 cut(s)	792
SfuI	TTCGAA	1 cut(s)	531
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	168, 760
SmoI	CTYRAG	2 cut(s)	168, 760
Sse9I	AATT	7 cut(s)	124, 304, 399, 441, 492, 933, 948
SseBI	AGGCCT	1 cut(s)	758
SspMI	CTAG	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	758
StyD4I	CCNGG	1 cut(s)	654
TaaI	ACNGT	3 cut(s)	326, 542, 845
TaiI	ACGT	2 cut(s)	908, 942
TaqI	TCGA	5 cut(s)	108, 531, 565, 574, 675
TasI	AATT	7 cut(s)	124, 304, 399, 441, 492, 933, 948
TfiI	GAWTC	2 cut(s)	205, 513
Tru1I	TTAA	3 cut(s)	114, 569, 708
Tru9I	TTAA	3 cut(s)	114, 569, 708
TscAI	CASTG	1 cut(s)	631
TseI	GCWGC	2 cut(s)	97, 173
TspDTI	ATGAA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	631
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	4 cut(s)	124, 304, 399, 492
XceI	RCATGY	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XmnI	GAANNNNTTC	2 cut(s)	359, 378
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.