Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Reverse (-)

14977011 .. 14979114

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATTTCGAACCTCCATTGCAAGAAGCATGCAAGGACTTCTTAGAAAATGCCCCAATAATTGACAAATTTCCAGAGGTTGAGGAATGTGAGCTACCTGTGATCGATCTTAGCCATCTGGATTCTGATCACGTAAACAGAGACGAGTGTATGAACAAGATTGTTCAAGCTGCAAGCCAGTGGGGCTTCTTTCTTGTTGTGAATCATAGGATTCGACCACAAGTTCTGAACAACATACAAGATGAGCAAAAGAAGGTGTTTCATCAGCCTTTCGACAAAAAGAAAGAACAAACATATTTGAACTTACCTGCCTGTAGTTATCGTTTGGGAATCCAGAAGCTGCTTGTCTCCAACAGTTCGCATGGGAGGAAGCCTTTCATATGTCTATGGCCAACGTTCCAGGGATTAATGAACAACACCAGAGTCTTAGGTCGGCAATTGAAAGCACACGGGAAGCGTGCGTTTCATTTAGCTGAAAGCTTAGCTGAAATTTTAGCCCAGCCTTTGGGTCTTGAATCAACCTATATTAAGGATCACTTTCCACCAGAAACCAGTTTTCTTCGACTAAACAGATACGCTCCCTGTCCATTTTCTTCCCAAGTCTTCGGCTTCTTCCCTCACACAGATAGCGATTTACTAACAATAGTTCACCAAGACCAAGTAGGTGGTTTAGAATTGTTTAAAGATGGAAGATGGGTTGGAATAAAGCCTAATTCTAAAGCTCTGGTTGTCAACGTTGGGGATCTGTTTGAGGCCTTGAGCAATGGTGTTTACAAGAGCATCAAGCACAGGGTGAGGGCCAATGAAAAAGTTGAAAGGTTTTCAGTGGCATTTTTCTTCTGCCCCACCATGGATACCGTGATACAGAGTTGCAGTACTACTGAACCAGCTGTGTATAAGAGCTTCACTTTTCAGGAATATAAAGAGCAAATGCAAAAGGATGTTCACGAGCTAGGAGATAAAGTAGGGCTCTCCAGATTTTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

330

Amino Acids

37.75

Weight (kDa)

6.64

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	32 - 97	1.3e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	185 - 282	2.8e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	505
AclI	AACGTT	2 cut(s)	395, 735
AclWI	GGATC	2 cut(s)	540, 750
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	68, 489
AdeI	CACNNNGTG	1 cut(s)	793
AfaI	GTAC	1 cut(s)	877
AfiI	CCNNNNNNNGG	2 cut(s)	505, 850
AgsI	TTSAA	5 cut(s)	167, 301, 442, 515, 815
AjnI	CCWGG	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	135, 352
AlwI	GGATC	2 cut(s)	540, 750
AlwNI	CAGNNNCTG	1 cut(s)	340
AoxI	GGCC	3 cut(s)	389, 753, 798
ApeKI	GCWGC	2 cut(s)	170, 340
ApoI	RAATTY	2 cut(s)	68, 489
AseI	ATTAAT	1 cut(s)	407
Asp700I	GAANNNNTTC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	798
AsuHPI	GGTGA	2 cut(s)	641, 805
AsuII	TTCGAA	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	972
BarI	GAAGNNNNNNTAC	2 cut(s)	887, 919
BauI	CACGAG	1 cut(s)	947
BbsI	GAAGAC	1 cut(s)	595
BbvI	GCAGC	2 cut(s)	157, 327
BccI	CCATC	3 cut(s)	123, 680, 687
BciT130I	CCWGG	1 cut(s)	401
BciVI	GTATCC	1 cut(s)	847
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	135, 352
BfaI	CTAG	1 cut(s)	953
BfmI	CTRYAG	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	847
BglI	GCCNNNNNGGC	1 cut(s)	183
BisI	GCNGC	2 cut(s)	171, 341
BlpI	GCTNAGC	1 cut(s)	481
BlsI	GCNGC	2 cut(s)	172, 342
BmcAI	AGTACT	1 cut(s)	877
Bme1390I	CCNGG	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	798
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	789
BpiI	GAAGAC	1 cut(s)	595
BpmI	CTGGAG	1 cut(s)	958
Bpu1102I	GCTNAGC	1 cut(s)	481
Bpu14I	TTCGAA	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	778
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	400, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 850
Bse1I	ACTGG	2 cut(s)	178, 552
Bse3DI	GCAATG	2 cut(s)	17, 769
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	400, 849
BseGI	GGATG	1 cut(s)	946
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	505, 850
BseMI	GCAATG	2 cut(s)	17, 769
BseNI	ACTGG	2 cut(s)	178, 552
BseXI	GCAGC	2 cut(s)	157, 327
BseYI	CCCAGC	1 cut(s)	498
BshFI	GGCC	3 cut(s)	391, 755, 800
BshVI	ATCGAT	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	505, 850
BsmAI	GTCTC	2 cut(s)	135, 352
BsmBI	CGTCTC	1 cut(s)	135
BsnI	GGCC	3 cut(s)	391, 755, 800
Bsp119I	TTCGAA	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	5 cut(s)	102, 106, 127, 532, 742
Bsp1720I	GCTNAGC	1 cut(s)	481
Bsp19I	CCATGG	1 cut(s)	849
BspANI	GGCC	3 cut(s)	391, 755, 800
BspDI	ATCGAT	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	540, 750
BspT104I	TTCGAA	1 cut(s)	9
BsrDI	GCAATG	2 cut(s)	17, 769
BsrI	ACTGG	2 cut(s)	178, 552
BssECI	CCNNGG	2 cut(s)	400, 849
BssMI	GATC	5 cut(s)	102, 106, 127, 532, 742
BssSI	CACGAG	1 cut(s)	947
BssT1I	CCWWGG	1 cut(s)	849
Bst2BI	CACGAG	1 cut(s)	947
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	356, 859
BstBAI	YACGTR	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	31, 175, 459
BstDEI	CTNAG	4 cut(s)	43, 110, 427, 481
BstDSI	CCRYGG	1 cut(s)	849
BstF5I	GGATG	1 cut(s)	946
BstKTI	GATC	5 cut(s)	105, 109, 130, 535, 745
BstMAI	GTCTC	2 cut(s)	135, 352
BstMBI	GATC	5 cut(s)	102, 106, 127, 532, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	157, 327
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	1 cut(s)	742
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	742
Bsu15I	ATCGAT	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	847
BsuRI	GGCC	3 cut(s)	391, 755, 800
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	849
BtsCI	GGATG	1 cut(s)	946
BtsIMutI	CAGTG	2 cut(s)	185, 831
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	31, 175, 459
CaiI	CAGNNNCTG	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	798
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	876
CviAII	CATG	3 cut(s)	30, 362, 850
CviQI	GTAC	1 cut(s)	876
DdeI	CTNAG	4 cut(s)	43, 110, 427, 481
DpnI	GATC	5 cut(s)	104, 108, 129, 534, 744
DpnII	GATC	5 cut(s)	102, 106, 127, 532, 742
DraI	TTTAAA	1 cut(s)	682
DraIII	CACNNNGTG	1 cut(s)	793
EaeI	YGGCCR	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	849
Eco147I	AGGCCT	1 cut(s)	755
Eco24I	GRGCYC	1 cut(s)	972
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	972
ErhI	CCWWGG	1 cut(s)	849
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	3 cut(s)	33, 365, 853
FalI	AAGNNNNNCTT	4 cut(s)	26, 58, 521, 553
FatI	CATG	3 cut(s)	29, 361, 849
FauNDI	CATATG	1 cut(s)	380
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	171, 341
FokI	GGATG	1 cut(s)	953
FriOI	GRGCYC	1 cut(s)	972
Fsp4HI	GCNGC	2 cut(s)	171, 341
FspBI	CTAG	1 cut(s)	953
GluI	GCNGC	2 cut(s)	171, 341
GsaI	CCCAGC	1 cut(s)	502
GsuI	CTGGAG	1 cut(s)	958
HaeIII	GGCC	3 cut(s)	391, 755, 800
Hin1II	CATG	3 cut(s)	33, 365, 853
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	6 cut(s)	122, 202, 211, 330, 423, 515
HphI	GGTGA	2 cut(s)	641, 805
Hpy166II	GTNNAC	5 cut(s)	136, 649, 733, 772, 946
Hpy188I	TCNGA	2 cut(s)	127, 228
Hpy188III	TCNNGA	7 cut(s)	74, 119, 334, 512, 914, 947, 975
Hpy8I	GTNNAC	5 cut(s)	136, 649, 733, 772, 946
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	2 cut(s)	356, 859
HpyCH4IV	ACGT	3 cut(s)	132, 395, 735
HpyCH4V	TGCA	5 cut(s)	22, 33, 173, 873, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	4 cut(s)	43, 110, 427, 481
HpySE526I	ACGT	3 cut(s)	132, 395, 735
Hsp92II	CATG	3 cut(s)	33, 365, 853
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	5 cut(s)	102, 106, 127, 532, 742
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	2 cut(s)	157, 327
LweI	GCATC	1 cut(s)	789
MaeI	CTAG	1 cut(s)	953
MaeII	ACGT	3 cut(s)	132, 395, 735
MalI	GATC	5 cut(s)	104, 108, 129, 534, 744
MboI	GATC	5 cut(s)	102, 106, 127, 532, 742
MboII	GAAGA	6 cut(s)	551, 585, 595, 604, 702, 829
MfeI	CAATTG	1 cut(s)	437
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	972
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	6 cut(s)	60, 68, 437, 489, 674, 712
MluNI	TGGCCA	1 cut(s)	391
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	2 cut(s)	375, 679
MnlI	CCTC	7 cut(s)	24, 70, 76, 360, 627, 745, 789
Mox20I	TGGCCA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	391
MseI	TTAA	3 cut(s)	407, 528, 681
Msp20I	TGGCCA	1 cut(s)	391
MspA1I	CMGCKG	1 cut(s)	890
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	183
NcoI	CCATGG	1 cut(s)	849
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	5 cut(s)	102, 106, 127, 532, 742
NlaIII	CATG	3 cut(s)	33, 365, 853
NspI	RCATGY	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	5 cut(s)	122, 202, 211, 330, 515
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	2 cut(s)	172, 342
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	407
Psp1406I	AACGTT	2 cut(s)	395, 735
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	798
PstNI	CAGNNNCTG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	742
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	1 cut(s)	877
RsaNI	GTAC	1 cut(s)	876
SaqAI	TTAA	3 cut(s)	407, 528, 681
SatI	GCNGC	2 cut(s)	171, 341
Sau3AI	GATC	5 cut(s)	102, 106, 127, 532, 742
Sau96I	GGNCC	1 cut(s)	798
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	1 cut(s)	789
SfcI	CTRYAG	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	6 cut(s)	60, 68, 437, 489, 674, 712
SseBI	AGGCCT	1 cut(s)	755
SspMI	CTAG	1 cut(s)	953
StuI	AGGCCT	1 cut(s)	755
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	356, 859
TaiI	ACGT	3 cut(s)	135, 398, 738
TaqI	TCGA	5 cut(s)	9, 105, 214, 273, 562
TasI	AATT	6 cut(s)	60, 68, 437, 489, 674, 712
TatI	WGTACW	1 cut(s)	875
TfiI	GAWTC	5 cut(s)	122, 202, 211, 330, 515
Tru1I	TTAA	3 cut(s)	407, 528, 681
Tru9I	TTAA	3 cut(s)	407, 528, 681
TscAI	CASTG	2 cut(s)	185, 831
TseI	GCWGC	2 cut(s)	170, 340
TspDTI	ATGAA	6 cut(s)	167, 251, 367, 425, 455, 819
TspRI	CASTG	2 cut(s)	185, 831
Van91I	CCANNNNNTGG	1 cut(s)	505
VspI	ATTAAT	1 cut(s)	407
XapI	RAATTY	2 cut(s)	68, 489
XceI	RCATGY	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	953
ZrmI	AGTACT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.