Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Reverse (-)

33543720 .. 33548804

Gene Structure 5085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTGACATATTCAAACTCTGTCTCCACATTTCCCATGGATTTCGAACCTCCATTCCAAGGAGCCTGCAAGTCCCTCTTACAAAATTCCCCAATAATTGACAAATTTCCAGAGGTCGAGGAATGCGAGCTACCTGTGATTGATCTTATCGATCTGGATTCTGATCACAGAAACAGAGACAAGTGTATGAACGAGATTGCTGAAGCTGCAAGCCAGTATGGTTTCTTTCAAGTTGTGAATCATGGGATTTCACCAGAAGTTCTGAACGGCATACGAGATGAGCAAAAGAAGGTGTTTCATCAGCCTTTTGACAAAAAGATAGAACAAAGATTTTTGAATTTATCTCCCATTAGTTACCGTTGGGGGAATCCAAAAGCTACTTGTCTCCGGCAGTTCTCATGGTCGGAAGCCATTCATATTTCTATGGCGGACATTCCAAGCATGAATGAACAACACAAGAGTCTTAGGTCGACTATTGAATCATTTGTGAAGAATGTGTCTCAATTAGCTGAAAGCTTAGCTGAAATTTTAGCCCAGCCTTTGGGTGTCGAATCCAGTTACTTTAAAGATCACTGTCCACCAAGAACTAGTTTTCTTCGACTAAACAGATATGCTCCCTGTCCATTTTCTTCCCAAGTCTTCGGCCTCTTCGCTCACACCGATAGTGCTTTCCTAACAGTAGTTCACCAAGATCAAGTTGGTGGTTTGGAATTGTTCATAGATGGAAGATGGATTGGAGTAAAACCTAATCCTGAGGCTCTGGTTGTCAACATTGGGGATTTTTTTGAGGCCCTGAGCAATGGTGTTTACAAGAGCATCAAACACAGGGTGATCACCAATCACAAAGTTGAGAGGTTTTCTGTGGCATACTTCTACTGCCCCTCCTTCGATACCGTGATTCAGAGTCGCAGTACTACTGAACCAGCTGTGTTTAAGAGCTTCACTTTGCGGGAATATAAACAACAAACTGAAAGGGATGTTCGCGAACTAGGGGAGAAAGTAGGGCTCCCCAGATTTCTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

341

Amino Acids

38.95

Weight (kDa)

6.02

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 143	2.7e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 294	1.4e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	470
AccII	CGCG	1 cut(s)	984
AciI	CCGC	2 cut(s)	428, 949
AcsI	RAATTY	4 cut(s)	85, 104, 337, 525
AcuI	CTGAAG	1 cut(s)	222
AdeI	CACNNNGTG	1 cut(s)	829
AfaI	GTAC	1 cut(s)	913
AfiI	CCNNNNNNNGG	2 cut(s)	59, 541
AgsI	TTSAA	4 cut(s)	15, 230, 337, 479
AhlI	ACTAGT	1 cut(s)	587
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	8 cut(s)	130, 206, 377, 509, 516, 521, 926, 939
AluI	AGCT	8 cut(s)	130, 206, 377, 509, 516, 521, 926, 939
Alw26I	GTCTC	4 cut(s)	28, 171, 389, 504
AoxI	GGCC	2 cut(s)	643, 789
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	4 cut(s)	85, 104, 337, 525
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	790
AsuHPI	GGTGA	4 cut(s)	243, 677, 826, 841
AsuII	TTCGAA	1 cut(s)	45
AxyI	CCTNAGG	1 cut(s)	753
BanII	GRGCYC	1 cut(s)	1008
BbsI	GAAGAC	1 cut(s)	631
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	716, 723
BceAI	ACGGC	1 cut(s)	283
BclI	TGATCA	2 cut(s)	163, 831
BcoDI	GTCTC	4 cut(s)	28, 171, 389, 504
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	2 cut(s)	588, 989
BisI	GCNGC	1 cut(s)	207
BlpI	GCTNAGC	1 cut(s)	517
BlsI	GCNGC	1 cut(s)	208
BmcAI	AGTACT	1 cut(s)	913
BmgT120I	GGNCC	1 cut(s)	790
BmiI	GGNNCC	2 cut(s)	64, 1007
BmsI	GCATC	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	794
Bpu1102I	GCTNAGC	1 cut(s)	517
Bpu14I	TTCGAA	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	36, 58
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 866, 896
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 541
Bse1I	ACTGG	2 cut(s)	214, 555
Bse21I	CCTNAGG	1 cut(s)	753
Bse3DI	GCAATG	1 cut(s)	805
Bse8I	GATNNNNATC	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	36, 58
BseGI	GGATG	1 cut(s)	982
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	59, 541
BseMI	GCAATG	1 cut(s)	805
BseMII	CTCAG	2 cut(s)	744, 785
BseNI	ACTGG	2 cut(s)	214, 555
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	984
BshFI	GGCC	2 cut(s)	645, 791
BshVI	ATCGAT	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	59, 541
BsmAI	GTCTC	4 cut(s)	28, 171, 389, 504
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	645, 791
Bsp119I	TTCGAA	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	1008
Bsp143I	GATC	6 cut(s)	142, 151, 163, 568, 691, 831
Bsp1720I	GCTNAGC	1 cut(s)	517
Bsp19I	CCATGG	1 cut(s)	36
Bsp68I	TCGCGA	1 cut(s)	984
BspACI	CCGC	2 cut(s)	428, 949
BspANI	GGCC	2 cut(s)	645, 791
BspCNI	CTCAG	2 cut(s)	745, 786
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	984
BspLI	GGNNCC	2 cut(s)	64, 1007
BspT104I	TTCGAA	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	214, 555
BssECI	CCNNGG	2 cut(s)	36, 58
BssMI	GATC	6 cut(s)	142, 151, 163, 568, 691, 831
BssT1I	CCWWGG	2 cut(s)	36, 58
Bst4CI	ACNGT	4 cut(s)	359, 575, 679, 895
Bst6I	CTCTTC	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	45
BstC8I	GCNNGC	3 cut(s)	67, 128, 211
BstDEI	CTNAG	4 cut(s)	464, 517, 753, 794
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	982
BstFNI	CGCG	1 cut(s)	984
BstKTI	GATC	6 cut(s)	145, 154, 166, 571, 694, 834
BstMAI	GTCTC	4 cut(s)	28, 171, 389, 504
BstMBI	GATC	6 cut(s)	142, 151, 163, 568, 691, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstUI	CGCG	1 cut(s)	984
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	631
Bsu15I	ATCGAT	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	753
BsuRI	GGCC	2 cut(s)	645, 791
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	982
BtsIMutI	CAGTG	1 cut(s)	571
BtuMI	TCGCGA	1 cut(s)	984
Cac8I	GCNNGC	3 cut(s)	67, 128, 211
Cfr13I	GGNCC	1 cut(s)	790
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	912
CviAII	CATG	4 cut(s)	37, 242, 399, 442
CviQI	GTAC	1 cut(s)	912
DdeI	CTNAG	4 cut(s)	464, 517, 753, 794
DpnI	GATC	6 cut(s)	144, 153, 165, 570, 693, 833
DpnII	GATC	6 cut(s)	142, 151, 163, 568, 691, 831
DraI	TTTAAA	1 cut(s)	565
DraIII	CACNNNGTG	1 cut(s)	829
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
EciI	GGCGGA	1 cut(s)	443
Eco130I	CCWWGG	2 cut(s)	36, 58
Eco24I	GRGCYC	1 cut(s)	1008
Eco57I	CTGAAG	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	753
EcoO109I	RGGNCCY	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	36, 58
EcoT38I	GRGCYC	1 cut(s)	1008
ErhI	CCWWGG	2 cut(s)	36, 58
FaeI	CATG	4 cut(s)	40, 245, 402, 445
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	4 cut(s)	36, 241, 398, 441
FauI	CCCGC	1 cut(s)	942
FbaI	TGATCA	2 cut(s)	163, 831
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	989
FriOI	GRGCYC	1 cut(s)	1008
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	588, 989
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	538
HaeIII	GGCC	2 cut(s)	645, 791
HapII	CCGG	1 cut(s)	388
Hin1II	CATG	4 cut(s)	40, 245, 402, 445
HincII	GTYRAC	3 cut(s)	6, 471, 769
HindII	GTYRAC	3 cut(s)	6, 471, 769
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	8 cut(s)	158, 238, 367, 460, 479, 551, 898, 904
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	4 cut(s)	243, 677, 826, 841
Hpy166II	GTNNAC	6 cut(s)	6, 471, 578, 685, 769, 808
Hpy188I	TCNGA	4 cut(s)	163, 264, 406, 903
Hpy188III	TCNNGA	4 cut(s)	110, 155, 752, 983
Hpy8I	GTNNAC	6 cut(s)	6, 471, 578, 685, 769, 808
HpyAV	CCTTC	2 cut(s)	283, 895
HpyCH4III	ACNGT	4 cut(s)	359, 575, 679, 895
HpyCH4V	TGCA	2 cut(s)	69, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	4 cut(s)	464, 517, 753, 794
Hsp92II	CATG	4 cut(s)	40, 245, 402, 445
Ksp22I	TGATCA	2 cut(s)	163, 831
Kzo9I	GATC	6 cut(s)	142, 151, 163, 568, 691, 831
LmnI	GCTCC	3 cut(s)	62, 619, 1011
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	825
MaeI	CTAG	2 cut(s)	588, 989
MaeIII	GTNAC	2 cut(s)	353, 557
MalI	GATC	6 cut(s)	144, 153, 165, 570, 693, 833
MboI	GATC	6 cut(s)	142, 151, 163, 568, 691, 831
MboII	GAAGA	6 cut(s)	502, 587, 621, 631, 640, 738
MhlI	GDGCHC	1 cut(s)	1008
MluCI	AATT	7 cut(s)	85, 96, 104, 337, 503, 525, 710
MlyI	GAGTC	2 cut(s)	469, 913
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	9 cut(s)	60, 86, 106, 112, 656, 748, 781, 846, 892
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	3 cut(s)	564, 933, 1024
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	1 cut(s)	388
Mva1269I	GAATGC	1 cut(s)	128
MvnI	CGCG	1 cut(s)	984
MwoI	GCNNNNNNNGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	6 cut(s)	142, 151, 163, 568, 691, 831
NlaIII	CATG	4 cut(s)	40, 245, 402, 445
NlaIV	GGNNCC	2 cut(s)	64, 1007
NruI	TCGCGA	1 cut(s)	984
NspV	TTCGAA	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 657
PctI	GAATGC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	6 cut(s)	158, 238, 367, 479, 551, 898
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	468, 912
PpsI	GAGTC	2 cut(s)	468, 912
PspFI	CCCAGC	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	64, 1007
PspPI	GGNCC	1 cut(s)	790
PvuII	CAGCTG	1 cut(s)	926
RruI	TCGCGA	1 cut(s)	984
RsaI	GTAC	1 cut(s)	913
RsaNI	GTAC	1 cut(s)	912
SalI	GTCGAC	1 cut(s)	469
SaqAI	TTAA	3 cut(s)	564, 933, 1024
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	6 cut(s)	142, 151, 163, 568, 691, 831
Sau96I	GGNCC	1 cut(s)	790
ScaI	AGTACT	1 cut(s)	913
SchI	GAGTC	2 cut(s)	469, 913
SduI	GDGCHC	1 cut(s)	1008
SfaNI	GCATC	1 cut(s)	825
SfuI	TTCGAA	1 cut(s)	45
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	7 cut(s)	85, 96, 104, 337, 503, 525, 710
SsiI	CCGC	2 cut(s)	428, 949
SspMI	CTAG	2 cut(s)	588, 989
StyI	CCWWGG	2 cut(s)	36, 58
TaaI	ACNGT	4 cut(s)	359, 575, 679, 895
TaqI	TCGA	7 cut(s)	45, 117, 150, 470, 549, 598, 888
TasI	AATT	7 cut(s)	85, 96, 104, 337, 503, 525, 710
TatI	WGTACW	1 cut(s)	911
TfiI	GAWTC	6 cut(s)	158, 238, 367, 479, 551, 898
Tru1I	TTAA	3 cut(s)	564, 933, 1024
Tru9I	TTAA	3 cut(s)	564, 933, 1024
TscAI	CASTG	1 cut(s)	578
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	6 cut(s)	203, 287, 404, 458, 462, 706
TspRI	CASTG	1 cut(s)	578
Van91I	CCANNNNNTGG	1 cut(s)	541
XapI	RAATTY	4 cut(s)	85, 104, 337, 525
XcmI	CCANNNNNNNNNTGG	2 cut(s)	34, 695
XmiI	GTMKAC	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	588, 989
ZrmI	AGTACT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.