Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Forward (+)

32965225 .. 32965710

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1225300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATTTCGAACCTCCATTCCAACAAACCTGGAAGGCAATACTCTTACAGAATTCCAGCCATGAAGCATTATTAAAAAGTCATGATTATGACAAGCTTTCTCTTGCTGAGGAATGTGAGCTGCCTCTGATAGATCTTAGCCATCTAAATTTGGGTCACCTAGAGAGAGACAAGTGTATGAATGATATCGCTCAAGCTGCAAACCAATGGGGTTTCTTCCAAGTTGTGAATCATGGAGTTTCACAAAAAGTTATAAAGAGCATGCAATATGAGCAAAAGAGGCTATTTCACATGCCCTTTGCAGAAAAGGTTGAAAAGAATTTCTTGAATTTATCCAGCAACTGTTACCGCTGGGGAAATCCACAAGCTACTTGTTTGAGGCAGTTCTTATGGTCAGAAGCATTTCATATATCACTCAATGAAATTCCAACAATGAATGATCTTCACAAGAGTCTCAAGTACGTACTTTTCCTATTTCACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

162

Amino Acids

18.94

Weight (kDa)

6.29

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	41 - 140	3.3e-18	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AciI	CCGC	1 cut(s)	349
AcsI	RAATTY	5 cut(s)	52, 148, 319, 328, 423
AfaI	GTAC	2 cut(s)	461, 465
AgsI	TTSAA	2 cut(s)	314, 328
AjnI	CCWGG	1 cut(s)	29
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	4 cut(s)	97, 121, 197, 368
AluI	AGCT	4 cut(s)	97, 121, 197, 368
Alw26I	GTCTC	2 cut(s)	162, 458
AlwNI	CAGNNNCTG	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	121, 197
ApoI	RAATTY	5 cut(s)	52, 148, 319, 328, 423
Asp700I	GAANNNNTTC	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	149, 470
AsuII	TTCGAA	1 cut(s)	9
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	108, 184
BccI	CCATC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	162, 458
BfaI	CTAG	1 cut(s)	161
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	2 cut(s)	122, 198
BlsI	GCNGC	2 cut(s)	123, 199
Bme1390I	CCNGG	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	9
BpuEI	CTTGAG	2 cut(s)	177, 440
BsaAI	YACGTR	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	108, 184
BseYI	CCCAGC	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	162, 458
Bsp119I	TTCGAA	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	133, 439
BspACI	CCGC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	82
BspT104I	TTCGAA	1 cut(s)	9
BssMI	GATC	2 cut(s)	133, 439
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	463
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	108, 137
BstEII	GGTNACC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	136, 442
BstMAI	GTCTC	2 cut(s)	162, 458
BstMBI	GATC	2 cut(s)	133, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 271, 280
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	2 cut(s)	265, 295
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	29
BstSNI	TACGTA	1 cut(s)	463
BstV1I	GCAGC	2 cut(s)	108, 184
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	342
CciI	TCATGA	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	460, 464
CviAII	CATG	5 cut(s)	62, 83, 233, 262, 292
CviJI	RGCY	7 cut(s)	60, 97, 121, 141, 197, 283, 368
CviKI_1	RGCY	7 cut(s)	60, 97, 121, 141, 197, 283, 368
CviQI	GTAC	2 cut(s)	460, 464
DdeI	CTNAG	2 cut(s)	108, 137
DpnI	GATC	2 cut(s)	135, 441
DpnII	GATC	2 cut(s)	133, 439
Eco105I	TACGTA	1 cut(s)	463
Eco32I	GATATC	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	187
FaeI	CATG	5 cut(s)	65, 86, 236, 265, 295
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	5 cut(s)	61, 82, 232, 261, 291
Fnu4HI	GCNGC	2 cut(s)	122, 198
Fsp4HI	GCNGC	2 cut(s)	122, 198
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	2 cut(s)	122, 198
GsaI	CCCAGC	1 cut(s)	355
Hin1II	CATG	5 cut(s)	65, 86, 236, 265, 295
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	2 cut(s)	229, 451
HphI	GGTGA	2 cut(s)	149, 470
Hpy188I	TCNGA	2 cut(s)	129, 397
Hpy188III	TCNNGA	2 cut(s)	83, 325
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	200, 265, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 271, 280
HpyF3I	CTNAG	2 cut(s)	108, 137
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	5 cut(s)	65, 86, 236, 265, 295
Kzo9I	GATC	2 cut(s)	133, 439
LpnPI	CCDG	5 cut(s)	16, 43, 70, 337, 349
Lsp1109I	GCAGC	2 cut(s)	108, 184
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	155, 344
MalI	GATC	2 cut(s)	135, 441
MboI	GATC	2 cut(s)	133, 439
MboII	GAAGA	2 cut(s)	208, 434
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	5 cut(s)	52, 148, 319, 328, 423
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	2 cut(s)	46, 452
MnlI	CCTC	5 cut(s)	24, 103, 135, 273, 372
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	2 cut(s)	74, 484
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	197, 271, 280
NdeII	GATC	2 cut(s)	133, 439
NlaIII	CATG	5 cut(s)	65, 86, 236, 265, 295
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	2 cut(s)	265, 295
NspV	TTCGAA	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	265
PagI	TCATGA	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	123, 199
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
Ppu21I	YACGTR	1 cut(s)	463
PsiI	TTATAA	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	29
PspEI	GGTNACC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	2 cut(s)	461, 465
RsaNI	GTAC	2 cut(s)	460, 464
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	74, 484
SatI	GCNGC	2 cut(s)	122, 198
Sau3AI	GATC	2 cut(s)	133, 439
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	31
SfuI	TTCGAA	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	192, 455
SmoI	CTYRAG	2 cut(s)	192, 455
SnaBI	TACGTA	1 cut(s)	463
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	5 cut(s)	52, 148, 319, 328, 423
SsiI	CCGC	1 cut(s)	349
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	9
TasI	AATT	5 cut(s)	52, 148, 319, 328, 423
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	74, 484
Tru9I	TTAA	2 cut(s)	74, 484
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	121, 197
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	5 cut(s)	78, 194, 395, 435, 449
XapI	RAATTY	5 cut(s)	52, 148, 319, 328, 423
XceI	RCATGY	2 cut(s)	265, 295
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.