Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Forward (+)

28974217 .. 28979233

Gene Structure 5017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1210700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGATTTCAAACCTCCCTTCCAACAAATCTGCAAGGCAATACTCTTACAGAATTCCACCCATGAAGCATTATCAAGTCATGATGATGACAAGGTTTCTCTTGTTGAGGAATGTGAACTGCCGCTGATAGATCTTAGTCATCTAAATTTGGGTCACTTTGAGGGAGACAAGTGTATGAATGAGATCGCTCAAGCAGCCAGCCAATGGGGTTTCTTCCAAGTTGTGAATCATGGAGTTTCACAAGAAATTATAAAGAGTATGCAAAATGAGCAAAGGAGGCTATTTCATAAGCCTTTTGCAGAAAAGGTTGAAAAGAATTTCTTGAATTCATCCAGCAATTGTTACCGCTGGGGGAATCCACAAGCTACTTGTTTGAGGCAGTTCTCATGGTCAGAAGCATTTCATATATCTGTCACCGAAATTCCAACGATGAATGATCATCACAACAGTCTCAGATCAACAATTGAAGCATTCGTGAAGACGGTGTCTGGTTTGGCTAAACGCTTAGCTGAAATACTGGCACAGCCTTTGGGTGTCAAACCGAATTACTTTGAAGAGAATTGTCCACCAAGAACTAGTTATCTTCGACTGAATAGATATGCTCCATGTCCATTTCCTTCGCAAGTGTTTGGCCTCATCTCGCACACCGATACCGATTTCCTAACTATAGTTCACCAGGACCAAGTAGGAGGCCTGGAAATATTTAAAGATGGAAGATGGTTGGCTGTTAAACCTAATCCTGAAGCTCTTGTTGTCAACATTGGGGACTTCTTTGAGGGGCTGTTGATGTTCCAAAGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

268

Amino Acids

30.35

Weight (kDa)

5.75

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 140	2.3e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	193 - 259	9.1e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AccB7I	CCANNNNNTGG	1 cut(s)	204
AciI	CCGC	2 cut(s)	122, 346
AcsI	RAATTY	5 cut(s)	52, 145, 316, 325, 420
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	1 cut(s)	799
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	5 cut(s)	10, 311, 325, 467, 554
AhlI	ACTAGT	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	675, 693
AluBI	AGCT	3 cut(s)	365, 509, 746
AluI	AGCT	3 cut(s)	365, 509, 746
Alw26I	GTCTC	2 cut(s)	159, 455
AoxI	GGCC	2 cut(s)	631, 691
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	5 cut(s)	52, 145, 316, 325, 420
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	679
AsuHPI	GGTGA	2 cut(s)	406, 665
AvaII	GGWCC	1 cut(s)	679
BbsI	GAAGAC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	2 cut(s)	704, 711
BciT130I	CCWGG	2 cut(s)	677, 695
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	159, 455
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	666
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	2 cut(s)	122, 195
BlpI	GCTNAGC	1 cut(s)	505
BlsI	GCNGC	2 cut(s)	123, 196
Bme1390I	CCNGG	2 cut(s)	677, 695
Bme18I	GGWCC	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	679
BmrFI	CCNGG	2 cut(s)	677, 695
BpiI	GAAGAC	1 cut(s)	485
Bpu1102I	GCTNAGC	1 cut(s)	505
BpuEI	CTTGAG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	677, 695
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	466
BseNI	ACTGG	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	348
BshFI	GGCC	2 cut(s)	633, 693
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	159, 455
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	633, 693
Bsp143I	GATC	4 cut(s)	130, 183, 436, 455
Bsp1720I	GCTNAGC	1 cut(s)	505
BspACI	CCGC	2 cut(s)	122, 346
BspANI	GGCC	2 cut(s)	633, 693
BspCNI	CTCAG	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	522
BssMI	GATC	4 cut(s)	130, 183, 436, 455
Bst2UI	CCWGG	2 cut(s)	677, 695
Bst4CI	ACNGT	2 cut(s)	449, 484
Bst6I	CTCTTC	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	3 cut(s)	134, 452, 505
BstF5I	GGATG	1 cut(s)	329
BstKTI	GATC	4 cut(s)	133, 186, 439, 458
BstMAI	GTCTC	2 cut(s)	159, 455
BstMBI	GATC	4 cut(s)	130, 183, 436, 455
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 268, 277
BstNI	CCWGG	2 cut(s)	677, 695
BstSCI	CCNGG	2 cut(s)	675, 693
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	633, 693
BtsCI	GGATG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	199
CciI	TCATGA	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	679
Csp6I	GTAC	1 cut(s)	798
CviAII	CATG	6 cut(s)	62, 80, 230, 387, 606, 801
CviQI	GTAC	1 cut(s)	798
DdeI	CTNAG	3 cut(s)	134, 452, 505
DpnI	GATC	4 cut(s)	132, 185, 438, 457
DpnII	GATC	4 cut(s)	130, 183, 436, 455
DraI	TTTAAA	1 cut(s)	706
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	762
EcoRI	GAATTC	2 cut(s)	52, 325
EcoRII	CCWGG	2 cut(s)	675, 693
FaeI	CATG	6 cut(s)	65, 83, 233, 390, 609, 804
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	6 cut(s)	61, 79, 229, 386, 605, 800
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	2 cut(s)	122, 195
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	122, 195
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	2 cut(s)	122, 195
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	633, 693
Hin1II	CATG	6 cut(s)	65, 83, 233, 390, 609, 804
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	2 cut(s)	226, 355
HphI	GGTGA	2 cut(s)	406, 665
Hpy166II	GTNNAC	4 cut(s)	116, 566, 673, 757
Hpy188I	TCNGA	2 cut(s)	394, 455
Hpy188III	TCNNGA	4 cut(s)	80, 322, 475, 740
Hpy8I	GTNNAC	4 cut(s)	116, 566, 673, 757
HpyAV	CCTTC	2 cut(s)	28, 627
HpyCH4III	ACNGT	2 cut(s)	449, 484
HpyCH4V	TGCA	3 cut(s)	33, 262, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 268, 277
HpyF3I	CTNAG	3 cut(s)	134, 452, 505
Hsp92II	CATG	6 cut(s)	65, 83, 233, 390, 609, 804
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	130, 183, 436, 455
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	576
MaeIII	GTNAC	3 cut(s)	152, 341, 412
MalI	GATC	4 cut(s)	132, 185, 438, 457
MboI	GATC	4 cut(s)	130, 183, 436, 455
MboII	GAAGA	5 cut(s)	205, 490, 566, 575, 726
MfeI	CAATTG	2 cut(s)	337, 462
MflI	RGATCY	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	46, 449
MnlI	CCTC	8 cut(s)	24, 100, 154, 270, 369, 644, 683, 769
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	2 cut(s)	705, 729
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	2 cut(s)	124, 348
MspR9I	CCNGG	2 cut(s)	677, 695
MunI	CAATTG	2 cut(s)	337, 462
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	2 cut(s)	677, 695
MwoI	GCNNNNNNNGC	3 cut(s)	194, 268, 277
NdeII	GATC	4 cut(s)	130, 183, 436, 455
NlaIII	CATG	6 cut(s)	65, 83, 233, 390, 609, 804
NmuCI	GTSAC	2 cut(s)	152, 412
PagI	TCATGA	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	693
PctI	GAATGC	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	226, 355
PflFI	GACNNNGTC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	123, 196
PsiI	TTATAA	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	675, 693
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	2 cut(s)	675, 693
PspPI	GGNCC	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	130
PsyI	GACNNNGTC	1 cut(s)	484
RsaI	GTAC	1 cut(s)	799
RsaNI	GTAC	1 cut(s)	798
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	705, 729
SatI	GCNGC	2 cut(s)	122, 195
Sau3AI	GATC	4 cut(s)	130, 183, 436, 455
Sau96I	GGNCC	1 cut(s)	679
ScrFI	CCNGG	2 cut(s)	677, 695
SetI	ASST	7 cut(s)	16, 96, 309, 367, 511, 736, 748
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	1 cut(s)	679
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
SpeI	ACTAGT	1 cut(s)	575
SseBI	AGGCCT	1 cut(s)	693
SsiI	CCGC	2 cut(s)	122, 346
SspI	AATATT	1 cut(s)	702
SspMI	CTAG	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	675, 693
TaaI	ACNGT	2 cut(s)	449, 484
TaqI	TCGA	1 cut(s)	586
TatI	WGTACW	1 cut(s)	797
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	226, 355
Tru1I	TTAA	2 cut(s)	705, 729
Tru9I	TTAA	2 cut(s)	705, 729
TseFI	GTSAC	2 cut(s)	152, 412
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	2 cut(s)	152, 412
TspDTI	ATGAA	6 cut(s)	78, 191, 275, 318, 392, 446
Tth111I	GACNNNGTC	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	679
XapI	RAATTY	5 cut(s)	52, 145, 316, 325, 420
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.