Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Forward (+)

32971450 .. 32972701

Gene Structure 1252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1225400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTATCTGGTTTGGCTAAAAGCTTAGCTGAAATTCTGGCACAGCCTTTGGGTGTCAAATCGATTTACTTTGAAGAGAATTGCCCACCAAGAAGTAGTTATCTTCGACTGAATAGATACGCTCCACGTCCGTTTCCTTCGCAAGTGTTTGGCCTCGTCTCGCACACTGATACCGATTTCCTAACTATAGTTCACCAGGACCAAGTAGGAGGTCTGGAAATATTTAAAGATGGAAGATGGATGGCAGTTAAACCTAATCCTGAAGCTCTCATTGTCAACATTGGGGACTTGTTTGAGGCCTTGAGCAATGGCATATACAAGAGCATCAAACACCGAGTGGTTACCGGACAAGAAGTTGAGAGGTTTTCTGTGGCATATTTCTACTGCCCCTCCTACGATGTAGTGGTCCGAAGCTGCGGTGATGAACCATCAACTTATAGGCAGTTCACTTTGAGGGAGTATAAACTCCAAACTCAAATTGATGTTCAGGAAACTGGTGAGAAAGTAGGGCTCCCAAGATTTCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

177

Amino Acids

19.95

Weight (kDa)

6.3

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	34 - 130	5.4e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	74
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	4 cut(s)	24, 29, 266, 414
AluI	AGCT	4 cut(s)	24, 29, 266, 414
Alw26I	GTCTC	1 cut(s)	163
AoxI	GGCC	2 cut(s)	151, 297
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	199, 406
AsuHPI	GGTGA	3 cut(s)	185, 431, 509
AvaII	GGWCC	2 cut(s)	199, 406
BanII	GRGCYC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	4 cut(s)	224, 231, 235, 436
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	415
BlpI	GCTNAGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	2 cut(s)	199, 406
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	199, 406
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	333
Bpu1102I	GCTNAGC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	322
Bsa29I	ATCGAT	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	62
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	401
BshFI	GGCC	2 cut(s)	153, 299
BshVI	ATCGAT	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	153, 299
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp1720I	GCTNAGC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	2 cut(s)	153, 299
BspDI	ATCGAT	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	25
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	401
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	153, 299
BsuTUI	ATCGAT	1 cut(s)	62
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	199, 406
ClaI	ATCGAT	1 cut(s)	62
CviJI	RGCY	9 cut(s)	17, 24, 29, 46, 153, 266, 299, 414, 511
CviKI_1	RGCY	9 cut(s)	17, 24, 29, 46, 153, 266, 299, 414, 511
DdeI	CTNAG	1 cut(s)	25
DraI	TTTAAA	1 cut(s)	226
DraIII	CACNNNGTG	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	199, 406
Eco57I	CTGAAG	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	163
FaiI	YATR	6 cut(s)	188, 314, 316, 376, 438, 462
FaqI	GGGAC	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	415
FokI	GGATG	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	415
GluI	GCNGC	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	153, 299
HapII	CCGG	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	22
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	3 cut(s)	185, 431, 509
Hpy166II	GTNNAC	3 cut(s)	193, 277, 447
Hpy188I	TCNGA	1 cut(s)	410
Hpy188III	TCNNGA	3 cut(s)	215, 260, 488
Hpy8I	GTNNAC	3 cut(s)	193, 277, 447
HpyAV	CCTTC	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	127
LmnI	GCTCC	2 cut(s)	127, 516
LpnPI	CCDG	8 cut(s)	23, 182, 200, 209, 273, 358, 473, 480
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	1 cut(s)	333
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	340
MboII	GAAGA	3 cut(s)	86, 95, 246
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	3 cut(s)	33, 79, 477
MnlI	CCTC	6 cut(s)	164, 203, 289, 354, 400, 447
MseI	TTAA	2 cut(s)	225, 249
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	195
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	2 cut(s)	199, 406
SaqAI	TTAA	2 cut(s)	225, 249
SatI	GCNGC	1 cut(s)	415
Sau96I	GGNCC	2 cut(s)	199, 406
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	8 cut(s)	26, 31, 130, 214, 256, 268, 365, 416
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	199, 406
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	3 cut(s)	33, 79, 477
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	1 cut(s)	417
SspI	AATATT	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	195
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	62, 106
TasI	AATT	3 cut(s)	33, 79, 477
Tru1I	TTAA	2 cut(s)	225, 249
Tru9I	TTAA	2 cut(s)	225, 249
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	1 cut(s)	414
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	199, 406
XapI	RAATTY	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.