Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Forward (+)

17164013 .. 17164519

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATTTCAAACCTCCCTTCCAACAAACCTGCAAGGCAATACTCTTACAGAATTCCACCCATGAAGCATTATCAAGTCATGATGATGACAAGGTTTCTCTTGTTGAGGAATGTGAACTGCCTCTGATAGATCTTAGCCATCTAAATTTGGGTCACTTTGAGGGAGACAAGTGTATGAATGAGATCGCTCAAGCAGCCAGCCAATGGGGTTTCTTCCAAGTTGTGAATCATGGAGTTTCACAAGAAGTTATAAAGAGTATGCAAAATGAGCAAAAGAGGCTATTTCATAAGCCTTTTGCAGAAAAGGTTGAAAAGAATTTCTTGAATTACCGCTGGGGGAATCCACAAGCTACTTGTTTGAGGCAGTTCTCATGGTCAGAAGCATTTCATATATCTCTCACCGAAATTCCAACGATGAATGATCATCACAACAGTCTCAGGTACGTACTTTTCACTTTTAAAACATTCTTGTACATTATGAAAAGAAAAACAAACAAAAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

169

Amino Acids

19.66

Weight (kDa)

6.75

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 134	3e-17	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	204
AciI	CCGC	1 cut(s)	331
AcsI	RAATTY	4 cut(s)	52, 145, 316, 405
AfaI	GTAC	3 cut(s)	443, 447, 473
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	10, 311, 325
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	159, 440
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	4 cut(s)	52, 145, 316, 405
Asp700I	GAANNNNTTC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	147
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	159, 440
BfuAI	ACCTGC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	451
BseXI	GCAGC	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	159, 440
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	130, 183, 421
BspACI	CCGC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	471
BssMI	GATC	3 cut(s)	130, 183, 421
Bst4CI	ACNGT	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	471
BstBAI	YACGTR	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	134, 437
BstKTI	GATC	3 cut(s)	133, 186, 424
BstMAI	GTCTC	2 cut(s)	159, 440
BstMBI	GATC	3 cut(s)	130, 183, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 268, 277
BstSNI	TACGTA	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	199
CciI	TCATGA	1 cut(s)	79
Csp6I	GTAC	3 cut(s)	442, 446, 472
CviAII	CATG	4 cut(s)	62, 80, 230, 372
CviJI	RGCY	6 cut(s)	138, 197, 201, 280, 292, 350
CviKI_1	RGCY	6 cut(s)	138, 197, 201, 280, 292, 350
CviQI	GTAC	3 cut(s)	442, 446, 472
DdeI	CTNAG	2 cut(s)	134, 437
DpnI	GATC	3 cut(s)	132, 185, 423
DpnII	GATC	3 cut(s)	130, 183, 421
DraI	TTTAAA	1 cut(s)	460
Eco105I	TACGTA	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	52
FaeI	CATG	4 cut(s)	65, 83, 233, 375
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	4 cut(s)	61, 79, 229, 371
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	337
Hin1II	CATG	4 cut(s)	65, 83, 233, 375
HinfI	GANTC	2 cut(s)	226, 340
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	126, 379
Hpy188III	TCNNGA	2 cut(s)	80, 322
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	3 cut(s)	33, 262, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 268, 277
HpyF3I	CTNAG	2 cut(s)	134, 437
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	65, 83, 233, 375
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	130, 183, 421
LpnPI	CCDG	4 cut(s)	43, 211, 319, 424
Lsp1109I	GCAGC	1 cut(s)	206
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	3 cut(s)	132, 185, 423
MboI	GATC	3 cut(s)	130, 183, 421
MboII	GAAGA	1 cut(s)	205
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	5 cut(s)	52, 145, 316, 325, 405
MmeI	TCCRAC	2 cut(s)	46, 434
MnlI	CCTC	6 cut(s)	24, 100, 132, 154, 270, 354
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	194, 268, 277
NdeII	GATC	3 cut(s)	130, 183, 421
NlaIII	CATG	4 cut(s)	65, 83, 233, 375
NmuCI	GTSAC	1 cut(s)	152
PagI	TCATGA	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	226, 340
PflMI	CCANNNNNTGG	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	445
PsiI	TTATAA	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	3 cut(s)	443, 447, 473
RsaNI	GTAC	3 cut(s)	442, 446, 472
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	3 cut(s)	130, 183, 421
SetI	ASST	7 cut(s)	16, 32, 96, 309, 352, 443, 447
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
SnaBI	TACGTA	1 cut(s)	445
Sse9I	AATT	5 cut(s)	52, 145, 316, 325, 405
SsiI	CCGC	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	447
TasI	AATT	5 cut(s)	52, 145, 316, 325, 405
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	226, 340
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	6 cut(s)	78, 191, 275, 377, 431, 494
Van91I	CCANNNNNTGG	1 cut(s)	204
XapI	RAATTY	4 cut(s)	52, 145, 316, 405
XmnI	GAANNNNTTC	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.