Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006558.1

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Reverse (-)

145909 .. 149749

Gene Structure 3841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006558.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atggatttcgaacctccattccaaggagcctgcaagtccctcttacaaaattccccaataattgacaaatttccagaggttgaggaatgcgagctaccagtgattgatcttatcgatctggattctgatcacagaaacagagacaagtgtatgaacgagattgctgaagctgcaagccagtatggtttctttcaagttgtgaatcatgggatttcaccagaagttctgaacagcatacgagatgagcaaaagaaggtgtttcatcagccttttgacaaaaagatagaacaaagatttttgaatttatctcccattagttaccgttgggggaatccaaaagctacttgtctcaggcagttctcatggtcggaagccattcatatttctatggcggacattccaagcatgaatgaacaacacaagagtcttaggcaatcaagttgcgtttttgctgattggataactgaattgagatgggtttctacagtggtggacatcggtggtgggagtattatgatcatcatcactagaggagcattcttccccacaagcttgagtaccacactaatggaattttcgaaccggtcgactattgaatcatttgtgaagaatgtgtctcaattagctgaaagcttagctgaaattttagcccagcctttgggtgtcgaatccagttactttaaagatcactgtccaccaagaactagttttcttcgactaaacagatatgctccctgtccattttcttcccaagtcttcggcctattcgctcacaccgatagtgctttcctaacaatagttcaccaagaccaagttggtggtttggaattgttcatagatggaagatggattggagtaaaacctaatcctgaggctctggttgtcaacattggggatttttttgaggccctgagcaatggtgtttacaagagcatcaaacacagggtgatcaccaatcacaaagttgagaggttttctgtggcatacttctactgcccctccttcgataccgtgattcagagtcgcagtactactgaaccagctgtgtttaagagcttcactttgcgggaatataaacaacaaactgaaagggatgttcgcgaactaggggagaaagtagggctccccagatttctccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

380

Amino Acids

43.29

Weight (kDa)

5.91

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	587
AccII	CGCG	1 cut(s)	1101
AciI	CCGC	2 cut(s)	392, 1066
AcsI	RAATTY	5 cut(s)	49, 68, 301, 572, 642
AcuI	CTGAAG	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	946
AfaI	GTAC	2 cut(s)	559, 1030
AfiI	CCNNNNNNNGG	2 cut(s)	23, 658
AgeI	ACCGGT	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	194, 301, 596
AhlI	ACTAGT	1 cut(s)	704
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	9 cut(s)	94, 170, 341, 552, 626, 633, 638, 1043, 1056
AluI	AGCT	9 cut(s)	94, 170, 341, 552, 626, 633, 638, 1043, 1056
Alw26I	GTCTC	3 cut(s)	135, 353, 621
AoxI	GGCC	2 cut(s)	760, 906
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	5 cut(s)	49, 68, 301, 572, 642
AsiGI	ACCGGT	1 cut(s)	582
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	907
AsuHPI	GGTGA	4 cut(s)	207, 794, 943, 958
AsuII	TTCGAA	2 cut(s)	9, 578
AxyI	CCTNAGG	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	1125
BbsI	GAAGAC	1 cut(s)	748
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	3 cut(s)	468, 833, 840
BclI	TGATCA	3 cut(s)	127, 516, 948
BcoDI	GTCTC	3 cut(s)	135, 353, 621
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	3 cut(s)	528, 705, 1106
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	172
BmcAI	AGTACT	1 cut(s)	1030
BmgT120I	GGNCC	1 cut(s)	907
BmiI	GGNNCC	2 cut(s)	28, 1124
BmsI	GCATC	1 cut(s)	942
BpiI	GAAGAC	1 cut(s)	748
Bpu10I	CCTNAGC	1 cut(s)	911
Bpu1102I	GCTNAGC	1 cut(s)	634
Bpu14I	TTCGAA	2 cut(s)	9, 578
BpuEI	CTTGAG	1 cut(s)	574
Bsa29I	ATCGAT	1 cut(s)	114
BsaBI	GATNNNNATC	2 cut(s)	126, 521
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	582
BsaXI	ACNNNNNCTCC	2 cut(s)	983, 1013
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 658
Bse118I	RCCGGY	1 cut(s)	582
Bse1I	ACTGG	3 cut(s)	98, 178, 672
Bse21I	CCTNAGG	1 cut(s)	870
Bse3DI	GCAATG	1 cut(s)	922
Bse8I	GATNNNNATC	2 cut(s)	126, 521
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	1099
BseJI	GATNNNNATC	2 cut(s)	126, 521
BseLI	CCNNNNNNNGG	2 cut(s)	23, 658
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	3 cut(s)	364, 861, 902
BseNI	ACTGG	3 cut(s)	98, 178, 672
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	651
Bsh1236I	CGCG	1 cut(s)	1101
Bsh1285I	CGRYCG	1 cut(s)	587
BshFI	GGCC	2 cut(s)	762, 908
BshTI	ACCGGT	1 cut(s)	582
BshVI	ATCGAT	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	587
BsiSI	CCGG	1 cut(s)	583
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	23, 658
BsmAI	GTCTC	3 cut(s)	135, 353, 621
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	2 cut(s)	92, 536
BsnI	GGCC	2 cut(s)	762, 908
Bsp119I	TTCGAA	2 cut(s)	9, 578
Bsp1286I	GDGCHC	1 cut(s)	1125
Bsp143I	GATC	6 cut(s)	106, 115, 127, 516, 685, 948
Bsp1720I	GCTNAGC	1 cut(s)	634
Bsp68I	TCGCGA	1 cut(s)	1101
BspACI	CCGC	2 cut(s)	392, 1066
BspANI	GGCC	2 cut(s)	762, 908
BspCNI	CTCAG	3 cut(s)	363, 862, 903
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	1101
BspLI	GGNNCC	2 cut(s)	28, 1124
BspT104I	TTCGAA	2 cut(s)	9, 578
BsrDI	GCAATG	1 cut(s)	922
BsrFI	RCCGGY	1 cut(s)	582
BsrI	ACTGG	3 cut(s)	98, 178, 672
BssAI	RCCGGY	1 cut(s)	582
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	6 cut(s)	106, 115, 127, 516, 685, 948
BssT1I	CCWWGG	1 cut(s)	22
Bst4CI	ACNGT	4 cut(s)	323, 487, 692, 1012
BstBI	TTCGAA	2 cut(s)	9, 578
BstC8I	GCNNGC	3 cut(s)	31, 92, 175
BstDEI	CTNAG	5 cut(s)	350, 428, 634, 870, 911
BstF5I	GGATG	1 cut(s)	1099
BstFNI	CGCG	1 cut(s)	1101
BstKTI	GATC	6 cut(s)	109, 118, 130, 519, 688, 951
BstMAI	GTCTC	3 cut(s)	135, 353, 621
BstMBI	GATC	6 cut(s)	106, 115, 127, 516, 685, 948
BstMCI	CGRYCG	1 cut(s)	587
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	1 cut(s)	1101
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	748
BstXI	CCANNNNNNTGG	2 cut(s)	568, 818
Bsu15I	ATCGAT	1 cut(s)	114
Bsu36I	CCTNAGG	1 cut(s)	870
BsuRI	GGCC	2 cut(s)	762, 908
BsuTUI	ATCGAT	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	1099
BtsIMutI	CAGTG	3 cut(s)	105, 492, 688
BtuMI	TCGCGA	1 cut(s)	1101
Cac8I	GCNNGC	3 cut(s)	31, 92, 175
Cfr10I	RCCGGY	1 cut(s)	582
Cfr13I	GGNCC	1 cut(s)	907
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	558, 1029
CspAI	ACCGGT	1 cut(s)	582
CviAII	CATG	3 cut(s)	206, 363, 406
CviQI	GTAC	2 cut(s)	558, 1029
DdeI	CTNAG	5 cut(s)	350, 428, 634, 870, 911
DpnI	GATC	6 cut(s)	108, 117, 129, 518, 687, 950
DpnII	GATC	6 cut(s)	106, 115, 127, 516, 685, 948
DraI	TTTAAA	1 cut(s)	682
DraIII	CACNNNGTG	1 cut(s)	946
EciI	GGCGGA	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	1125
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	870
EcoO109I	RGGNCCY	1 cut(s)	907
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	1125
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	3 cut(s)	209, 366, 409
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	205, 362, 405
FauI	CCCGC	1 cut(s)	1059
FbaI	TGATCA	3 cut(s)	127, 516, 948
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	1106
FriOI	GRGCYC	1 cut(s)	1125
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	3 cut(s)	528, 705, 1106
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	655
HaeIII	GGCC	2 cut(s)	762, 908
HapII	CCGG	1 cut(s)	583
Hin1II	CATG	3 cut(s)	209, 366, 409
HincII	GTYRAC	2 cut(s)	588, 886
HindII	GTYRAC	2 cut(s)	588, 886
HindIII	AAGCTT	2 cut(s)	550, 631
HinfI	GANTC	8 cut(s)	122, 202, 331, 424, 596, 668, 1015, 1021
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	4 cut(s)	207, 794, 943, 958
Hpy166II	GTNNAC	6 cut(s)	493, 588, 695, 802, 886, 925
Hpy188I	TCNGA	4 cut(s)	127, 228, 370, 1020
Hpy188III	TCNNGA	4 cut(s)	74, 119, 869, 1100
Hpy8I	GTNNAC	6 cut(s)	493, 588, 695, 802, 886, 925
HpyAV	CCTTC	2 cut(s)	247, 1012
HpyCH4III	ACNGT	4 cut(s)	323, 487, 692, 1012
HpyCH4V	TGCA	2 cut(s)	33, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	5 cut(s)	350, 428, 634, 870, 911
Hsp92II	CATG	3 cut(s)	209, 366, 409
Ksp22I	TGATCA	3 cut(s)	127, 516, 948
Kzo9I	GATC	6 cut(s)	106, 115, 127, 516, 685, 948
LmnI	GCTCC	4 cut(s)	26, 533, 736, 1128
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	942
MaeI	CTAG	3 cut(s)	528, 705, 1106
MaeIII	GTNAC	2 cut(s)	317, 674
MalI	GATC	6 cut(s)	108, 117, 129, 518, 687, 950
MboI	GATC	6 cut(s)	106, 115, 127, 516, 685, 948
MboII	GAAGA	6 cut(s)	532, 619, 704, 738, 748, 855
MhlI	GDGCHC	1 cut(s)	1125
MluCI	AATT	9 cut(s)	49, 60, 68, 301, 467, 572, 620, 642, 827
MlyI	GAGTC	2 cut(s)	433, 1030
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	9 cut(s)	24, 50, 70, 76, 524, 865, 898, 963, 1009
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	3 cut(s)	681, 1050, 1141
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	1043
MspI	CCGG	1 cut(s)	583
Mva1269I	GAATGC	2 cut(s)	92, 536
MvnI	CGCG	1 cut(s)	1101
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	6 cut(s)	106, 115, 127, 516, 685, 948
NlaIII	CATG	3 cut(s)	209, 366, 409
NlaIV	GGNNCC	2 cut(s)	28, 1124
NruI	TCGCGA	1 cut(s)	1101
NspV	TTCGAA	2 cut(s)	9, 578
PcsI	WCGNNNNNNNCGW	2 cut(s)	584, 774
PctI	GAATGC	2 cut(s)	92, 536
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	6 cut(s)	122, 202, 331, 596, 668, 1015
PflMI	CCANNNNNTGG	1 cut(s)	658
PinAI	ACCGGT	1 cut(s)	582
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	432, 1029
PpsI	GAGTC	2 cut(s)	432, 1029
PspFI	CCCAGC	1 cut(s)	651
PspN4I	GGNNCC	2 cut(s)	28, 1124
PspPI	GGNCC	1 cut(s)	907
PvuII	CAGCTG	1 cut(s)	1043
RruI	TCGCGA	1 cut(s)	1101
RsaI	GTAC	2 cut(s)	559, 1030
RsaNI	GTAC	2 cut(s)	558, 1029
RseI	CAYNNNNRTG	1 cut(s)	566
SalI	GTCGAC	1 cut(s)	586
SaqAI	TTAA	3 cut(s)	681, 1050, 1141
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	6 cut(s)	106, 115, 127, 516, 685, 948
Sau96I	GGNCC	1 cut(s)	907
ScaI	AGTACT	1 cut(s)	1030
SchI	GAGTC	2 cut(s)	433, 1030
SduI	GDGCHC	1 cut(s)	1125
SfaNI	GCATC	1 cut(s)	942
SfcI	CTRYAG	1 cut(s)	483
SfuI	TTCGAA	2 cut(s)	9, 578
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
SpeI	ACTAGT	1 cut(s)	704
Sse9I	AATT	9 cut(s)	49, 60, 68, 301, 467, 572, 620, 642, 827
SsiI	CCGC	2 cut(s)	392, 1066
SspMI	CTAG	3 cut(s)	528, 705, 1106
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	4 cut(s)	323, 487, 692, 1012
TaqI	TCGA	7 cut(s)	9, 114, 578, 587, 666, 715, 1005
TasI	AATT	9 cut(s)	49, 60, 68, 301, 467, 572, 620, 642, 827
TatI	WGTACW	1 cut(s)	1028
TfiI	GAWTC	6 cut(s)	122, 202, 331, 596, 668, 1015
Tru1I	TTAA	3 cut(s)	681, 1050, 1141
Tru9I	TTAA	3 cut(s)	681, 1050, 1141
TscAI	CASTG	3 cut(s)	105, 492, 695
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	6 cut(s)	167, 251, 368, 422, 426, 823
TspRI	CASTG	3 cut(s)	105, 492, 695
Van91I	CCANNNNNTGG	1 cut(s)	658
XapI	RAATTY	5 cut(s)	49, 68, 301, 572, 642
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XmiI	GTMKAC	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	3 cut(s)	528, 705, 1106
ZrmI	AGTACT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.