Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Forward (+)

15460407 .. 15465741

Gene Structure 5335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0166500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1893 bp

ATGAAGTATGTTTTGGTGACTGGTGGAGTTGTGAGTGGCCTTGGAAAAGGAGTCACTGCTAGTAGTATTGGTCTTCTCCTAAAGGCTTGTGGACTAAGGGTCACCTCCATCAAAATTGATCCTTACTTGAACACTGATGCTGGAACCATGTCACCTGTGGAGCATGGTGAAGTCTTTGTTCTAGATGATGGTGGTGAGGTGGACCTGGACCTTGGAAACTATGAGCGATTCCTAGAAATCAAGCTGACCCGTGATAATAATATTACTACCGGAAAGATTTACCAGGATGTTATAAACAAAGAGAGAAAGGGAGATTATCTGGGAAAAACTGTCCAGGTTGTCCCTCACATCACAGATGCTATCCAAGACTGGATTGAGCGTGTAGCCCATATACCAGTTGATGGAAAGTCAGGCCCTGCTGATGTTTGTGTCATAGAGTTGGGTGGAACTATAGGTGATATTGAATCCATGCCATTTATTGAGGCATTAGGACAATTCTCGTACCGTGTAGGAGCTGATAATTTTTGCTTAGTTCATGTCAGCCTTGTGCCTGTTTTGAATGTTGTTGGTGAACAGAAAACAAAACCAACCCAGCACAGTGTTCGTGGACTGAGATGTCTGGGTTTGACACCACATGTGATAGCTTGTCGCAGCACAACGCCACTAGAAGAAAATGTAAAGACCAAACTCAGTCAATTTTGCCATGTCCAGAAAGATAACATCATCACGCTCTATGATGTTCCCAACATTTGGCACATTCCATTACTCTTAAGAGACCAGAAGGCTCATGAAGCAATCTTTAAAGTGTTTAACCTTCAAGGATTAACAAGGGAACCTGAATTAGAACAGTGGACTACTATGGCTGAAGTTTGTGATATGTTGCATGAGCCGGTGCGCATTGCCATAGTGGGGAAGTATACAAGCCTTCCTGATGCATACCTCTCCATACAAAAGGCTCTTGTTCATGCTTCTGTTTCTCGCGGCAAGAAACTTTTTGTGGATTGGGTTCCATCTGGTGACCTTGAGCACACAACTGAGAAAGAGAATCCTGATGCTTATAAAGCTGCATGGAAGTTGTTGAAGGGCGCAGATGGTATTCTTATTCCAGGAGGATTTGGTGATAGAGGAGTGCAAGGGAAAATTCTTGCAGTAAAGTATGCCCGGCAAAAGAGAATTCCATTCCTTGGTATTTGTCTAGGAATGCAGGTCGCCGTGATTGAGTTTGCAAGATCTGTTCTTGGTCTGCAGGATGCCAACAGCACAGAATTTGATCCTGACACTAAGAATCCCTGTGTTATATTTATGCCTGAGGGCTCAAAAACGCATATGGGAGGCACCATGCGCCTTGGATCCAGGAGAACATATTTCCAGTCTACAGACTGTAAATCAGCTAAACTATATGGAAACAAACGCTTTGTTGATGAGAGACATCGGCACAGATATGAGGTGAACCCTGACATGGTAGCACGCCTTGAAAATTCCGGCCTCTCTTTCACTGGCAAGGATGAAACTGGCCAGCGCATGGAGATTGTTGAGCTACGTAATCATCCCTATTTCATCGGTGTCCAGTTCCATCCTGAATATAAATCAAGACCAGCAAAACCTTCTGCTTTATTCCTAGGGCTTATAGCAGCAGCATGTGGACAGTTGGATGCTCTCTTACCAAGCTCTGAGAGGAAAAGGAGTGCCTCATACGGAGCAGGCAACGAAATGTTTGGAGCAGCATGTGGGCAGTTGGATGCTTTCCTCCAGGGCTCTCCAGAGGCGAAAAGGAATGTCTCGAATGGAGCAGGCCACGATGTATATAATGCCAAAACATGCCAAAATGGAGGTGTAATTACTAATAGGCCTCAAGACGGTGTATATAGCATTTTCAATGGGATGCACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

630

Amino Acids

69.27

Weight (kDa)

7.27

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_synth_N	PF06418	2 - 272	3e-123	CTP synthase N-terminus
GATase	PF00117	309 - 543	6.7e-45	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	293, 1059
AasI	GACNNNNNNGTC	1 cut(s)	615
Acc16I	TGCGCA	1 cut(s)	896
Acc36I	ACCTGC	1 cut(s)	1195
AccB1I	GGYRCC	1 cut(s)	1334
AccB7I	CCANNNNNTGG	4 cut(s)	401, 750, 1184, 1522
AccI	GTMKAC	2 cut(s)	917, 1373
AccII	CGCG	1 cut(s)	981
AciI	CCGC	1 cut(s)	981
AclWI	GGATC	4 cut(s)	113, 1265, 1344, 1357
AcoI	YGGCCR	1 cut(s)	1513
AcsI	RAATTY	4 cut(s)	1140, 1173, 1265, 1477
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	7 cut(s)	401, 750, 909, 1184, 1459, 1522, 1856
AflII	CTTAAG	1 cut(s)	769
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	7 cut(s)	130, 464, 559, 818, 1081, 1475, 1876
AhdI	GACNNNNNGTC	1 cut(s)	98
AjnI	CCWGG	6 cut(s)	204, 282, 333, 1105, 1352, 1749
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	7 cut(s)	244, 515, 644, 1064, 1391, 1537, 1668
AluI	AGCT	7 cut(s)	244, 515, 644, 1064, 1391, 1537, 1668
Alw21I	GWGCWC	1 cut(s)	1029
Alw26I	GTCTC	3 cut(s)	768, 1420, 1783
AlwI	GGATC	4 cut(s)	113, 1265, 1344, 1357
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	6 cut(s)	37, 412, 1483, 1513, 1792, 1847
ApeKI	GCWGC	5 cut(s)	651, 1064, 1631, 1634, 1721
ApoI	RAATTY	4 cut(s)	1140, 1173, 1265, 1477
AspA2I	CCTAGG	1 cut(s)	1618
AspLEI	GCGC	4 cut(s)	897, 1088, 1344, 1521
AspS9I	GGNCC	3 cut(s)	202, 208, 413
AsuC2I	CCSGG	1 cut(s)	1162
AvaII	GGWCC	2 cut(s)	202, 208
AvrII	CCTAGG	1 cut(s)	1618
AxyI	CCTNAGG	1 cut(s)	1308
BalI	TGGCCA	1 cut(s)	1515
BamHI	GGATCC	1 cut(s)	1349
BanI	GGYRCC	1 cut(s)	1334
BanII	GRGCYC	2 cut(s)	1316, 1757
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	1029
BbvI	GCAGC	5 cut(s)	663, 1051, 1643, 1646, 1733
BccI	CCATC	6 cut(s)	116, 182, 395, 1018, 1085, 1581
BceAI	ACGGC	1 cut(s)	1196
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	6 cut(s)	206, 284, 335, 1107, 1354, 1751
BcnI	CCSGG	1 cut(s)	1162
BcoDI	GTCTC	3 cut(s)	768, 1420, 1783
BfaI	CTAG	6 cut(s)	60, 182, 233, 665, 1196, 1619
BfmI	CTRYAG	3 cut(s)	450, 1244, 1374
BfrI	CTTAAG	1 cut(s)	769
BfuAI	ACCTGC	1 cut(s)	1195
BglII	AGATCT	1 cut(s)	1229
BisI	GCNGC	6 cut(s)	652, 982, 1065, 1632, 1635, 1722
BlnI	CCTAGG	1 cut(s)	1618
BlsI	GCNGC	6 cut(s)	653, 983, 1066, 1633, 1636, 1723
Bme1390I	CCNGG	7 cut(s)	206, 284, 335, 1107, 1162, 1354, 1751
Bme18I	GGWCC	2 cut(s)	202, 208
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	202, 208, 413
BmiI	GGNNCC	5 cut(s)	145, 834, 1008, 1336, 1351
BmrFI	CCNGG	7 cut(s)	206, 284, 335, 1107, 1162, 1354, 1751
BmsI	GCATC	8 cut(s)	127, 346, 922, 1042, 1240, 1642, 1729, 1872
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	2 cut(s)	1733, 1743
BpuEI	CTTGAG	2 cut(s)	1043, 1836
BpuMI	CCSGG	1 cut(s)	1162
BsaAI	YACGTR	1 cut(s)	1541
BsaI	GGTCTC	1 cut(s)	768
BsaJI	CCNNGG	6 cut(s)	40, 211, 1183, 1345, 1618, 1750
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	7 cut(s)	401, 750, 909, 1184, 1459, 1522, 1856
Bse118I	RCCGGY	1 cut(s)	889
Bse1I	ACTGG	7 cut(s)	25, 374, 395, 1369, 1501, 1516, 1567
Bse21I	CCTNAGG	1 cut(s)	1308
Bse3DI	GCAATG	1 cut(s)	897
BseBI	CCWGG	6 cut(s)	206, 284, 335, 1107, 1354, 1751
BseDI	CCNNGG	6 cut(s)	40, 211, 1183, 1345, 1618, 1750
BseGI	GGATG	8 cut(s)	292, 1255, 1510, 1546, 1573, 1657, 1744, 1887
BseLI	CCNNNNNNNGG	7 cut(s)	401, 750, 909, 1184, 1459, 1522, 1856
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	5 cut(s)	602, 703, 1026, 1299, 1662
BseNI	ACTGG	7 cut(s)	25, 374, 395, 1369, 1501, 1516, 1567
BseRI	GAGGAG	1 cut(s)	1140
BseXI	GCAGC	5 cut(s)	663, 1051, 1643, 1646, 1733
BseYI	CCCAGC	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	981
BshFI	GGCC	6 cut(s)	39, 414, 1485, 1515, 1794, 1849
BshNI	GGYRCC	1 cut(s)	1334
BsiHKAI	GWGCWC	1 cut(s)	1029
BsiSI	CCGG	4 cut(s)	270, 890, 1162, 1482
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	7 cut(s)	401, 750, 909, 1184, 1459, 1522, 1856
BsmAI	GTCTC	3 cut(s)	768, 1420, 1783
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	1206
BsnI	GGCC	6 cut(s)	39, 414, 1485, 1515, 1794, 1849
Bso31I	GGTCTC	1 cut(s)	768
Bsp1286I	GDGCHC	3 cut(s)	1029, 1316, 1757
Bsp143I	GATC	4 cut(s)	118, 1229, 1270, 1349
BspACI	CCGC	1 cut(s)	981
BspANI	GGCC	6 cut(s)	39, 414, 1485, 1515, 1794, 1849
BspCNI	CTCAG	5 cut(s)	603, 702, 1027, 1300, 1663
BspFNI	CGCG	1 cut(s)	981
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	5 cut(s)	145, 834, 1008, 1336, 1351
BspMAI	CTGCAG	1 cut(s)	1248
BspMI	ACCTGC	1 cut(s)	1195
BspPI	GGATC	4 cut(s)	113, 1265, 1344, 1357
BspT107I	GGYRCC	1 cut(s)	1334
BspTI	CTTAAG	1 cut(s)	769
BspTNI	GGTCTC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	897
BsrFI	RCCGGY	1 cut(s)	889
BsrI	ACTGG	7 cut(s)	25, 374, 395, 1369, 1501, 1516, 1567
BssAI	RCCGGY	1 cut(s)	889
BssECI	CCNNGG	6 cut(s)	40, 211, 1183, 1345, 1618, 1750
BssMI	GATC	4 cut(s)	118, 1229, 1270, 1349
BssNAI	GTATAC	1 cut(s)	918
BssT1I	CCWWGG	5 cut(s)	40, 211, 1183, 1345, 1618
Bst1107I	GTATAC	1 cut(s)	918
Bst2UI	CCWGG	6 cut(s)	206, 284, 335, 1107, 1354, 1751
Bst4CI	ACNGT	7 cut(s)	331, 506, 599, 849, 1382, 1647, 1859
BstAFI	CTTAAG	1 cut(s)	769
BstBAI	YACGTR	1 cut(s)	1541
BstC8I	GCNNGC	4 cut(s)	1468, 1517, 1702, 1792
BstDEI	CTNAG	8 cut(s)	95, 529, 611, 689, 1035, 1281, 1308, 1671
BstEII	GGTNACC	2 cut(s)	100, 1016
BstF5I	GGATG	8 cut(s)	292, 1255, 1510, 1546, 1573, 1657, 1744, 1887
BstFNI	CGCG	1 cut(s)	981
BstHHI	GCGC	4 cut(s)	897, 1088, 1344, 1521
BstKTI	GATC	4 cut(s)	121, 1232, 1273, 1352
BstMAI	GTCTC	3 cut(s)	768, 1420, 1783
BstMBI	GATC	4 cut(s)	118, 1229, 1270, 1349
BstMWI	GCNNNNNNNGC	3 cut(s)	791, 1061, 1341
BstNI	CCWGG	6 cut(s)	206, 284, 335, 1107, 1354, 1751
BstNSI	RCATGY	4 cut(s)	638, 1641, 1728, 1821
BstPI	GGTNACC	2 cut(s)	100, 1016
BstSCI	CCNGG	7 cut(s)	204, 282, 333, 1105, 1160, 1352, 1749
BstSFI	CTRYAG	3 cut(s)	450, 1244, 1374
BstSNI	TACGTA	1 cut(s)	1541
BstUI	CGCG	1 cut(s)	981
BstV1I	GCAGC	5 cut(s)	663, 1051, 1643, 1646, 1733
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	1229, 1349
BstYI	RGATCY	2 cut(s)	1229, 1349
BstZ17I	GTATAC	1 cut(s)	918
Bsu36I	CCTNAGG	1 cut(s)	1308
BsuRI	GGCC	6 cut(s)	39, 414, 1485, 1515, 1794, 1849
BtsCI	GGATG	8 cut(s)	292, 1255, 1510, 1546, 1573, 1657, 1744, 1887
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	5 cut(s)	54, 132, 604, 854, 1494
BveI	ACCTGC	1 cut(s)	1195
Cac8I	GCNNGC	4 cut(s)	1468, 1517, 1702, 1792
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	4 cut(s)	897, 1088, 1344, 1521
Cfr10I	RCCGGY	1 cut(s)	889
Cfr13I	GGNCC	3 cut(s)	202, 208, 413
Csp6I	GTAC	1 cut(s)	502
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	8 cut(s)	95, 529, 611, 689, 1035, 1281, 1308, 1671
DpnI	GATC	4 cut(s)	120, 1231, 1272, 1351
DpnII	GATC	4 cut(s)	118, 1229, 1270, 1349
DraI	TTTAAA	1 cut(s)	802
DrdI	GACNNNNNNGTC	1 cut(s)	615
DriI	GACNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	1513
Eam1105I	GACNNNNNGTC	1 cut(s)	98
Eco105I	TACGTA	1 cut(s)	1541
Eco130I	CCWWGG	5 cut(s)	40, 211, 1183, 1345, 1618
Eco147I	AGGCCT	1 cut(s)	1849
Eco24I	GRGCYC	2 cut(s)	1316, 1757
Eco31I	GGTCTC	1 cut(s)	768
Eco47I	GGWCC	2 cut(s)	202, 208
Eco57I	CTGAAG	1 cut(s)	885
Eco81I	CCTNAGG	1 cut(s)	1308
Eco91I	GGTNACC	2 cut(s)	100, 1016
EcoO109I	RGGNCCY	1 cut(s)	413
EcoO65I	GGTNACC	2 cut(s)	100, 1016
EcoRI	GAATTC	1 cut(s)	1173
EcoRII	CCWGG	6 cut(s)	204, 282, 333, 1105, 1352, 1749
EcoT14I	CCWWGG	5 cut(s)	40, 211, 1183, 1345, 1618
EcoT22I	ATGCAT	1 cut(s)	937
EcoT38I	GRGCYC	2 cut(s)	1316, 1757
ErhI	CCWWGG	5 cut(s)	40, 211, 1183, 1345, 1618
FaqI	GGGAC	1 cut(s)	326
FauNDI	CATATG	1 cut(s)	1326
FblI	GTMKAC	2 cut(s)	917, 1373
Fnu4HI	GCNGC	6 cut(s)	652, 982, 1065, 1632, 1635, 1722
FokI	GGATG	7 cut(s)	299, 1262, 1517, 1533, 1560, 1664, 1751
FriOI	GRGCYC	2 cut(s)	1316, 1757
Fsp4HI	GCNGC	6 cut(s)	652, 982, 1065, 1632, 1635, 1722
FspAI	RTGCGCAY	1 cut(s)	896
FspBI	CTAG	6 cut(s)	60, 182, 233, 665, 1196, 1619
FspI	TGCGCA	1 cut(s)	896
GlaI	GCGC	4 cut(s)	896, 1087, 1343, 1520
GluI	GCNGC	6 cut(s)	652, 982, 1065, 1632, 1635, 1722
GsaI	CCCAGC	1 cut(s)	595
GsuI	CTGGAG	2 cut(s)	1733, 1743
HaeIII	GGCC	6 cut(s)	39, 414, 1485, 1515, 1794, 1849
HapII	CCGG	4 cut(s)	270, 890, 1162, 1482
HhaI	GCGC	4 cut(s)	897, 1088, 1344, 1521
Hin6I	GCGC	4 cut(s)	895, 1086, 1342, 1519
HinP1I	GCGC	4 cut(s)	895, 1086, 1342, 1519
HinfI	GANTC	5 cut(s)	51, 228, 464, 1045, 1285
HpaII	CCGG	4 cut(s)	270, 890, 1162, 1482
Hpy166II	GTNNAC	9 cut(s)	92, 202, 572, 608, 852, 918, 1374, 1450, 1643
Hpy188I	TCNGA	1 cut(s)	1672
Hpy8I	GTNNAC	9 cut(s)	92, 202, 572, 608, 852, 918, 1374, 1450, 1643
HpyAV	CCTTC	5 cut(s)	775, 824, 935, 1075, 1614
HpyCH4III	ACNGT	7 cut(s)	331, 506, 599, 849, 1382, 1647, 1859
HpyCH4IV	ACGT	1 cut(s)	1540
HpyCH4V	TGCA	9 cut(s)	883, 935, 1067, 1132, 1148, 1204, 1226, 1246, 1885
HpyF10VI	GCNNNNNNNGC	3 cut(s)	791, 1061, 1341
HpyF3I	CTNAG	8 cut(s)	95, 529, 611, 689, 1035, 1281, 1308, 1671
HpySE526I	ACGT	1 cut(s)	1540
HspAI	GCGC	4 cut(s)	895, 1086, 1342, 1519
Kzo9I	GATC	4 cut(s)	118, 1229, 1270, 1349
LmnI	GCTCC	5 cut(s)	160, 512, 1697, 1718, 1787
Lsp1109I	GCAGC	5 cut(s)	663, 1051, 1643, 1646, 1733
LweI	GCATC	8 cut(s)	127, 346, 922, 1042, 1240, 1642, 1729, 1872
MaeI	CTAG	6 cut(s)	60, 182, 233, 665, 1196, 1619
MaeII	ACGT	1 cut(s)	1540
MaeIII	GTNAC	5 cut(s)	16, 52, 100, 150, 1016
MalI	GATC	4 cut(s)	120, 1231, 1272, 1351
MboI	GATC	4 cut(s)	118, 1229, 1270, 1349
MboII	GAAGA	2 cut(s)	65, 680
MflI	RGATCY	2 cut(s)	1229, 1349
MhlI	GDGCHC	3 cut(s)	1029, 1316, 1757
MlsI	TGGCCA	1 cut(s)	1515
MluNI	TGGCCA	1 cut(s)	1515
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	1629, 1716
Mox20I	TGGCCA	1 cut(s)	1515
Mph1103I	ATGCAT	1 cut(s)	937
MscI	TGGCCA	1 cut(s)	1515
MseI	TTAA	4 cut(s)	770, 801, 810, 824
MslI	CAYNNNNRTG	1 cut(s)	1440
Msp20I	TGGCCA	1 cut(s)	1515
MspCI	CTTAAG	1 cut(s)	769
MspI	CCGG	4 cut(s)	270, 890, 1162, 1482
MspR9I	CCNGG	7 cut(s)	206, 284, 335, 1107, 1162, 1354, 1751
Mva1269I	GAATGC	1 cut(s)	1206
MvaI	CCWGG	6 cut(s)	206, 284, 335, 1107, 1354, 1751
MvnI	CGCG	1 cut(s)	981
MwoI	GCNNNNNNNGC	3 cut(s)	791, 1061, 1341
NciI	CCSGG	1 cut(s)	1162
NdeI	CATATG	1 cut(s)	1326
NdeII	GATC	4 cut(s)	118, 1229, 1270, 1349
NlaIV	GGNNCC	5 cut(s)	145, 834, 1008, 1336, 1351
NmuCI	GTSAC	5 cut(s)	16, 52, 100, 150, 1016
NsbI	TGCGCA	1 cut(s)	896
NsiI	ATGCAT	1 cut(s)	937
NspI	RCATGY	4 cut(s)	638, 1641, 1728, 1821
PagI	TCATGA	1 cut(s)	787
PceI	AGGCCT	1 cut(s)	1849
PciI	ACATGT	1 cut(s)	634
PctI	GAATGC	1 cut(s)	1206
PfeI	GAWTC	4 cut(s)	228, 464, 1045, 1285
PflMI	CCANNNNNTGG	4 cut(s)	401, 750, 1184, 1522
PfoI	TCCNGGA	2 cut(s)	1105, 1352
PkrI	GCNGC	6 cut(s)	653, 983, 1066, 1633, 1636, 1723
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	1541
PscI	ACATGT	1 cut(s)	634
PsiI	TTATAA	2 cut(s)	293, 1059
Psp6I	CCWGG	6 cut(s)	204, 282, 333, 1105, 1352, 1749
PspEI	GGTNACC	2 cut(s)	100, 1016
PspFI	CCCAGC	1 cut(s)	591
PspGI	CCWGG	6 cut(s)	204, 282, 333, 1105, 1352, 1749
PspN4I	GGNNCC	5 cut(s)	145, 834, 1008, 1336, 1351
PspPI	GGNCC	3 cut(s)	202, 208, 413
PstI	CTGCAG	1 cut(s)	1248
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	2 cut(s)	1229, 1349
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	1440
SaqAI	TTAA	4 cut(s)	770, 801, 810, 824
SatI	GCNGC	6 cut(s)	652, 982, 1065, 1632, 1635, 1722
Sau3AI	GATC	4 cut(s)	118, 1229, 1270, 1349
Sau96I	GGNCC	3 cut(s)	202, 208, 413
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	7 cut(s)	206, 284, 335, 1107, 1162, 1354, 1751
SduI	GDGCHC	3 cut(s)	1029, 1316, 1757
SfaNI	GCATC	8 cut(s)	127, 346, 922, 1042, 1240, 1642, 1729, 1872
SfcI	CTRYAG	3 cut(s)	450, 1244, 1374
SinI	GGWCC	2 cut(s)	202, 208
SmiMI	CAYNNNNRTG	1 cut(s)	1440
SmlI	CTYRAG	3 cut(s)	769, 1022, 1851
SmoI	CTYRAG	3 cut(s)	769, 1022, 1851
SnaBI	TACGTA	1 cut(s)	1541
SseBI	AGGCCT	1 cut(s)	1849
SsiI	CCGC	1 cut(s)	981
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	6 cut(s)	60, 182, 233, 665, 1196, 1619
StuI	AGGCCT	1 cut(s)	1849
StyD4I	CCNGG	7 cut(s)	204, 282, 333, 1105, 1160, 1352, 1749
StyI	CCWWGG	5 cut(s)	40, 211, 1183, 1345, 1618
TaaI	ACNGT	7 cut(s)	331, 506, 599, 849, 1382, 1647, 1859
TaiI	ACGT	1 cut(s)	1543
TaqI	TCGA	1 cut(s)	1781
TauI	GCSGC	1 cut(s)	984
TfiI	GAWTC	4 cut(s)	228, 464, 1045, 1285
Tru1I	TTAA	4 cut(s)	770, 801, 810, 824
Tru9I	TTAA	4 cut(s)	770, 801, 810, 824
TscAI	CASTG	5 cut(s)	61, 139, 604, 854, 1501
TseFI	GTSAC	5 cut(s)	16, 52, 100, 150, 1016
TseI	GCWGC	5 cut(s)	651, 1064, 1631, 1634, 1721
Tsp45I	GTSAC	5 cut(s)	16, 52, 100, 150, 1016
TspDTI	ATGAA	6 cut(s)	17, 524, 804, 953, 1521, 1546
TspGWI	ACGGA	1 cut(s)	1710
TspRI	CASTG	5 cut(s)	61, 139, 604, 854, 1501
Van91I	CCANNNNNTGG	4 cut(s)	401, 750, 1184, 1522
Vha464I	CTTAAG	1 cut(s)	769
VpaK11BI	GGWCC	2 cut(s)	202, 208
XapI	RAATTY	4 cut(s)	1140, 1173, 1265, 1477
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	4 cut(s)	638, 1641, 1728, 1821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmaJI	CCTAGG	1 cut(s)	1618
XmiI	GTMKAC	2 cut(s)	917, 1373
XspI	CTAG	6 cut(s)	60, 182, 233, 665, 1196, 1619
Zsp2I	ATGCAT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.