Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008288

Physical Location & Seq

Genomic Coordinates Reverse (-)

33282724 .. 33293413

Gene Structure 10690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG256000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATTTCGAACCTCCATTCCAAGGAGCCTGCAAGTCCCTCTTACAAAATTCCCCAATAATTGACAAAGTTCCAGAGGTTGAGGAATGCGAGCTACCTGTGATTGATCTTATCGATCTGGATTCTGATCACAGAAACAGAGACAAGTGTATGAACGAGATTGCTGAAGCTGCAAGCCAGTATGGTTTCTTTCAAGTTGTGAATCATGGGATTTCACCAGAAGTTCTGAACAGCATACGAGATGAGCAAAAGAAGGTGTTTCATCAGCCTTTTGACAAAAAGATAGAACAAAGATTTTTGAATTTATCTCCCATTAGTTACCGTTGGGGGAATCCAAAAGCTACTTGTCTCCGGCAGTTCTCATGGTCGGAAGCCATTCATATTTCTATGGCGGACATTCCAAGCATGAATGAACAACACAAGAGTCTTAGGTCGACTATTGAATCATTTGTGAAGAATGTGTCTCAATTAGCTGAAAGCTTAGCTGAAATTTTAGCCCAGCCTTTGGGTGTCGAATCCAGTTACTTTAAAGATCACTGTCCACCAAGAACTAGTTTTCTTCGACTAAACAGATATGCTCCCTGTCCATTTTCTTCCCAAGTCTTCGGCCTCTTCGCTCACACCGATAGTGCTTTCCTAACAATAGTTCACCAAGACCAAGTTGGTGGTTTGGAATTGTTCATAGATGGAAGATGGATTGGAGTAAAACCTAATCCTGAGGCTCTGGTTGTCAACATTGGGGATTTTTTTGAGGCCCTGAGCAATGGTGTTTACAAGAGCATCAAACACAGGGTGATCACCAATCACAAAGTTGAGAGGTTTTCCGTGGCATACTTCTACTGCCCCTCCTTCGATACCGTGATTCAGAGTCGCAGTACTACTGAACCAGCTGTGTTTAAGAGCTTCACTTTGCGGGAATATAAACAACAAACTGAAAGGGATGTTCGCGAACTAGGGGAGAAAAAAGTTGAAGAGTTTGCAAAACCTGCAAATCATTTACCTGTAGAAAACCACTGTTCAGATGGAGGCTTACATTTGAATTACACACATTCAAATAAAGTAGATCGATCATCATCTCTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0050896 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

41.11

Weight (kDa)

5.97

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	32 - 131	2.8e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	185 - 282	1.1e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50960
fragaria_vesca	FvH4_3g21910
malus_domestica	MD03G1210700.v1.1 MD11G1225300.v1.1 MD11G1225400.v1.1
prunus_persica	Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1 Prupe.4G204600_v2.0.a1
pyrus_communis	pycom03g15930 pycom11g19890
rosa_chinensis	RchiOBHm_Chr5g0037711
rosa_laevigata	RLG00000033804
rosa_multiflora	Rmu_sc0006558.1_g000028
rosa_roxburghii	Rroxscaffold_1G00043190
rosa_rugosa	Rorug05G0166500 Rorug05G0166600
rosa_samantha	Rh5AG256000 Rh5BG258100 Rh5CG291500 Rh5DG267600
rosa_wichuraiana	Rw5G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	994
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	434
AccII	CGCG	1 cut(s)	948
AciI	CCGC	2 cut(s)	392, 913
AcsI	RAATTY	3 cut(s)	49, 301, 489
AcuI	CTGAAG	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	793
AfaI	GTAC	1 cut(s)	877
AfiI	CCNNNNNNNGG	2 cut(s)	23, 505
AgsI	TTSAA	6 cut(s)	194, 301, 443, 971, 1039, 1053
AhlI	ACTAGT	1 cut(s)	551
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	8 cut(s)	94, 170, 341, 473, 480, 485, 890, 903
AluI	AGCT	8 cut(s)	94, 170, 341, 473, 480, 485, 890, 903
Alw26I	GTCTC	3 cut(s)	135, 353, 468
AoxI	GGCC	2 cut(s)	607, 753
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	3 cut(s)	49, 301, 489
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	754
AsuHPI	GGTGA	4 cut(s)	207, 641, 790, 805
AsuII	TTCGAA	1 cut(s)	9
AxyI	CCTNAGG	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	595
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	3 cut(s)	680, 687, 1016
BclI	TGATCA	2 cut(s)	127, 795
BcoDI	GTCTC	3 cut(s)	135, 353, 468
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	2 cut(s)	552, 953
BfmI	CTRYAG	1 cut(s)	1002
BfuAI	ACCTGC	1 cut(s)	994
BisI	GCNGC	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	172
BmcAI	AGTACT	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	789
BpiI	GAAGAC	1 cut(s)	595
Bpu10I	CCTNAGC	1 cut(s)	758
Bpu1102I	GCTNAGC	1 cut(s)	481
Bpu14I	TTCGAA	1 cut(s)	9
Bsa29I	ATCGAT	2 cut(s)	114, 1066
BsaBI	GATNNNNATC	2 cut(s)	126, 1072
BsaJI	CCNNGG	2 cut(s)	22, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 505
Bse1I	ACTGG	2 cut(s)	178, 519
Bse21I	CCTNAGG	1 cut(s)	717
Bse3DI	GCAATG	1 cut(s)	769
Bse8I	GATNNNNATC	2 cut(s)	126, 1072
BseCI	ATCGAT	2 cut(s)	114, 1066
BseDI	CCNNGG	2 cut(s)	22, 825
BseGI	GGATG	1 cut(s)	946
BseJI	GATNNNNATC	2 cut(s)	126, 1072
BseLI	CCNNNNNNNGG	2 cut(s)	23, 505
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	2 cut(s)	708, 749
BseNI	ACTGG	2 cut(s)	178, 519
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	948
BshFI	GGCC	2 cut(s)	609, 755
BshVI	ATCGAT	2 cut(s)	114, 1066
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	23, 505
BsmAI	GTCTC	3 cut(s)	135, 353, 468
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	609, 755
Bsp119I	TTCGAA	1 cut(s)	9
Bsp143I	GATC	7 cut(s)	106, 115, 127, 532, 795, 1063, 1067
Bsp1720I	GCTNAGC	1 cut(s)	481
Bsp68I	TCGCGA	1 cut(s)	948
BspACI	CCGC	2 cut(s)	392, 913
BspANI	GGCC	2 cut(s)	609, 755
BspCNI	CTCAG	2 cut(s)	709, 750
BspDI	ATCGAT	2 cut(s)	114, 1066
BspFNI	CGCG	1 cut(s)	948
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	994
BspT104I	TTCGAA	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	769
BsrI	ACTGG	2 cut(s)	178, 519
BssECI	CCNNGG	2 cut(s)	22, 825
BssMI	GATC	7 cut(s)	106, 115, 127, 532, 795, 1063, 1067
BssT1I	CCWWGG	1 cut(s)	22
Bst4CI	ACNGT	4 cut(s)	323, 539, 859, 1016
Bst6I	CTCTTC	2 cut(s)	617, 966
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	31, 92, 175
BstDEI	CTNAG	4 cut(s)	428, 481, 717, 758
BstDSI	CCRYGG	1 cut(s)	825
BstF5I	GGATG	1 cut(s)	946
BstFNI	CGCG	1 cut(s)	948
BstKTI	GATC	7 cut(s)	109, 118, 130, 535, 798, 1066, 1070
BstMAI	GTCTC	3 cut(s)	135, 353, 468
BstMBI	GATC	7 cut(s)	106, 115, 127, 532, 795, 1063, 1067
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 986
BstSFI	CTRYAG	1 cut(s)	1002
BstUI	CGCG	1 cut(s)	948
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	595
BstXI	CCANNNNNNTGG	1 cut(s)	665
Bsu15I	ATCGAT	2 cut(s)	114, 1066
Bsu36I	CCTNAGG	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	609, 755
BsuTUI	ATCGAT	2 cut(s)	114, 1066
BtgI	CCRYGG	1 cut(s)	825
BtsCI	GGATG	1 cut(s)	946
BtsIMutI	CAGTG	2 cut(s)	535, 1012
BtuMI	TCGCGA	1 cut(s)	948
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	3 cut(s)	31, 92, 175
Cfr13I	GGNCC	1 cut(s)	754
ClaI	ATCGAT	2 cut(s)	114, 1066
Csp6I	GTAC	1 cut(s)	876
CviAII	CATG	3 cut(s)	206, 363, 406
CviQI	GTAC	1 cut(s)	876
DdeI	CTNAG	4 cut(s)	428, 481, 717, 758
DpnI	GATC	7 cut(s)	108, 117, 129, 534, 797, 1065, 1069
DpnII	GATC	7 cut(s)	106, 115, 127, 532, 795, 1063, 1067
DraI	TTTAAA	1 cut(s)	529
DraIII	CACNNNGTG	1 cut(s)	793
Eam1104I	CTCTTC	2 cut(s)	617, 966
EarI	CTCTTC	2 cut(s)	617, 966
EciI	GGCGGA	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	717
EcoO109I	RGGNCCY	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	3 cut(s)	209, 366, 409
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	205, 362, 405
FauI	CCCGC	1 cut(s)	906
FbaI	TGATCA	2 cut(s)	127, 795
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	953
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	552, 953
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	502
HaeIII	GGCC	2 cut(s)	609, 755
HapII	CCGG	1 cut(s)	352
Hin1II	CATG	3 cut(s)	209, 366, 409
HincII	GTYRAC	2 cut(s)	435, 733
HindII	GTYRAC	2 cut(s)	435, 733
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	8 cut(s)	122, 202, 331, 424, 443, 515, 862, 868
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	4 cut(s)	207, 641, 790, 805
Hpy166II	GTNNAC	5 cut(s)	435, 542, 649, 733, 772
Hpy188I	TCNGA	5 cut(s)	127, 228, 370, 867, 1021
Hpy188III	TCNNGA	4 cut(s)	74, 119, 716, 947
Hpy8I	GTNNAC	5 cut(s)	435, 542, 649, 733, 772
HpyAV	CCTTC	2 cut(s)	247, 859
HpyCH4III	ACNGT	4 cut(s)	323, 539, 859, 1016
HpyCH4V	TGCA	4 cut(s)	33, 173, 980, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 986
HpyF3I	CTNAG	4 cut(s)	428, 481, 717, 758
Hsp92II	CATG	3 cut(s)	209, 366, 409
Ksp22I	TGATCA	2 cut(s)	127, 795
Kzo9I	GATC	7 cut(s)	106, 115, 127, 532, 795, 1063, 1067
LmnI	GCTCC	2 cut(s)	26, 583
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	789
MaeI	CTAG	2 cut(s)	552, 953
MaeIII	GTNAC	2 cut(s)	317, 521
MalI	GATC	7 cut(s)	108, 117, 129, 534, 797, 1065, 1069
MboI	GATC	7 cut(s)	106, 115, 127, 532, 795, 1063, 1067
MboII	GAAGA	7 cut(s)	466, 551, 585, 595, 604, 702, 983
MluCI	AATT	7 cut(s)	49, 60, 301, 467, 489, 674, 1039
MlyI	GAGTC	2 cut(s)	433, 877
MmeI	TCCRAC	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	2 cut(s)	528, 897
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	1 cut(s)	352
Mva1269I	GAATGC	1 cut(s)	92
MvnI	CGCG	1 cut(s)	948
MwoI	GCNNNNNNNGC	2 cut(s)	170, 986
NdeII	GATC	7 cut(s)	106, 115, 127, 532, 795, 1063, 1067
NlaIII	CATG	3 cut(s)	209, 366, 409
NlaIV	GGNNCC	1 cut(s)	28
NruI	TCGCGA	1 cut(s)	948
NspV	TTCGAA	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	621
PctI	GAATGC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	6 cut(s)	122, 202, 331, 443, 515, 862
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	432, 876
PpsI	GAGTC	2 cut(s)	432, 876
PspFI	CCCAGC	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	754
PvuII	CAGCTG	1 cut(s)	890
RruI	TCGCGA	1 cut(s)	948
RsaI	GTAC	1 cut(s)	877
RsaNI	GTAC	1 cut(s)	876
SalI	GTCGAC	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	528, 897
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	7 cut(s)	106, 115, 127, 532, 795, 1063, 1067
Sau96I	GGNCC	1 cut(s)	754
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	2 cut(s)	433, 877
SfaNI	GCATC	1 cut(s)	789
SfcI	CTRYAG	1 cut(s)	1002
SfuI	TTCGAA	1 cut(s)	9
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	7 cut(s)	49, 60, 301, 467, 489, 674, 1039
SsiI	CCGC	2 cut(s)	392, 913
SspMI	CTAG	2 cut(s)	552, 953
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	4 cut(s)	323, 539, 859, 1016
TaqI	TCGA	7 cut(s)	9, 114, 434, 513, 562, 852, 1066
TasI	AATT	7 cut(s)	49, 60, 301, 467, 489, 674, 1039
TatI	WGTACW	1 cut(s)	875
TfiI	GAWTC	6 cut(s)	122, 202, 331, 443, 515, 862
Tru1I	TTAA	2 cut(s)	528, 897
Tru9I	TTAA	2 cut(s)	528, 897
TscAI	CASTG	2 cut(s)	542, 1019
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	6 cut(s)	167, 251, 368, 422, 426, 670
TspGWI	ACGGA	1 cut(s)	814
TspRI	CASTG	2 cut(s)	542, 1019
Van91I	CCANNNNNTGG	1 cut(s)	505
XapI	RAATTY	3 cut(s)	49, 301, 489
XcmI	CCANNNNNNNNNTGG	2 cut(s)	659, 1019
XmiI	GTMKAC	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	2 cut(s)	552, 953
ZrmI	AGTACT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.