AT1G51550

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013494
Physical Location & Seq
Reverse (-)
19117032 .. 19119382
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51550.1

Sequence Viewer

Length: 1437 bp
ATGGCGGCGGAATCAACCAGAAACTCTTCTCCGCCGTCTACTTCTCAGTCTTCAAGCCCTATAATCAATTTACCCGATGACCATCTCTTAACCATCTTGCTTCTTCTTCCCGTAGATTCAATCCTCTCCTTCTCAATGACCTGCAAGCGATACAAGTCTCTAGCTTGCTCCGACAGTCTCTGGGAAGCTCTGTGTGAACGAGAATGGGGACCAACATCTGTAGATGCTTTAAAGTTGTCATCTTTACGAGATGGGTTTTCATGGATGTTGATGTTTCAGCGAGTTTATAAGATGGATTCTGTTTGCTGTCACAAGATCTCAGACCCAGATGATGATGATGAAGAATCTTCTTCGTTTCCGATCCCTAGAGCTTCTCATTCTCTCAACTTCGTTAATGATCATCTTGTTCTCTTTGGTGGTGGTTGTCAAGGAGGACGCCATCTTGATGATACATGGACATCATATGTTGATAAGAGCAATCAAAGCATATTGAAATGGAAGAAAGTTAAATCAGGGACTCCAAGTGGGAGATTCGGACACACCTGCATCGTTATAGGCGAGTATCTACTCTTATTTGGAGGTATAAATGACCGTGGAGAGAGGCTAAATGACACATGGATTGGTCAAGTCTTTTGCCACGAGGGACTCTCTTGGAAACTCCTCAATGTTGGGTCTTTGCAGCGGCCTCGTCCTCCTCCTCGTGGTGCTCATTCCGCCTGTTGTATTGCTGAGAAGAAGATGGTTGTACATGGAGGAATCGGGCTGAATGGAGTCAGGCTTGGAGATACATGGATTCTTGAACTTTCTGAAGATTTCAGCTCTGGGACATGGCACATGGTGGAGTCTCCACAATTACCGCCACCGCGCTCAGGGCATACTTTGACCTGCATTAGAGAAAACCAAGTGGTTCTATTTGGAGGCAGAGGATTAGGATATGATGTGCTTGATGATGTTTGGATCTTGGATATTCAAGAACCGTGTGAAGAAAAATGGATACAGATATTCTACGATTTCCAGGATGTTCCCGAATACGCATCGTTGCCTCGGGTTGGTCACTCGGCGACTCTTGTATTGGGAGGTCGAATCTTGATTTATGGCGGTGAAGATTCTTATAGGCATAGGAAAGATGATTTCTGGGTGTTGGATGTTAAAACCATTCCTTCATCAGGTTTGAAACCACAAGGGCTTAGCTTAAACGGATCATCAGTGTGGAAAAAGCTTGATCGAATCTCATATGGACCAAAAAGTCGGTCTTTTCACCGTGCCTGCGCTGATTGTTCAGGGAGATTTTTATATGTGTTTGGCGGAATGGTTGATGGTCTTCTTCAGCCTGCAGCATCGTCTGGTCTAAGGTTTGATGGAGAGCTTTTCATGGTGGAGCTTGTTCTTGGCTTCTCTGACCTAGACCATCAACAAAGACCCGGAAAAAGCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_3 Kelch_4 Kelch_5

Protein Analysis

478

Amino Acids

53.17

Weight (kDa)

5.93

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 22 - 66 4.8e-08 F-box-like
F-box PF00646 22 - 62 1.7e-07 F-box domain
Beta-prop_FBX42 PF13415 116 - 270 8.1e-25 FBX42, beta-propeller domain
Kelch_HCF PF13854 116 - 252 3.2e-08 Host cell factor, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 117 - 269 1.2e-23 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 144 - 253 1.7e-09 Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 179 - 436 2.9e-37 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 272 - 385 6.6e-16 FBX42, beta-propeller domain
Beta-prop_TYW4 PF13418 286 - 384 1.7e-08 tRNA wybutosine-synthesizing protein 4, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51550
fragaria_vesca FvH4_6g37110
malus_domestica MD09G1161500.v1.1 MD17G1147400.v1.1
prunus_persica Prupe.3G020600_v2.0.a1
pyrus_communis pycom09g08000 pycom09g08050 pycom17g14000
rosa_chinensis RchiOBHm_Chr2g0149671
rosa_laevigata RLG00000020436
rosa_multiflora Rmu_sc0014307.1_g000005
rosa_roxburghii Rroxscaffold_2G00097810
rosa_rugosa Rorug02G0414300
rosa_samantha Rh2AG474500 Rh2BG486200 Rh2CG460200 Rh2DG495500
rosa_wichuraiana Rw2G038690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AarI CACCTGC 1 cut(s) 551
AasI GACNNNNNNGTC 1 cut(s) 1245
Acc36I ACCTGC 3 cut(s) 149, 551, 893
AccI GTMKAC 1 cut(s) 38
AccII CGCG 1 cut(s) 865
AciI CCGC 9 cut(s) 5, 8, 32, 682, 714, 857, 863, 1098, 1305
AclWI GGATC 3 cut(s) 355, 965, 1207
AcuI CTGAAG 2 cut(s) 828, 1310
AcyI GRCGYC 1 cut(s) 436
AdeI CACNNNGTG 1 cut(s) 838
AfaI GTAC 1 cut(s) 747
AfiI CCNNNNNNNGG 4 cut(s) 701, 869, 1049, 1166
AgsI TTSAA 6 cut(s) 54, 120, 493, 800, 971, 1174
AjnI CCWGG 1 cut(s) 1014
AluBI AGCT 8 cut(s) 164, 188, 371, 819, 1191, 1219, 1366, 1381
AluI AGCT 8 cut(s) 164, 188, 371, 819, 1191, 1219, 1366, 1381
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 3 cut(s) 162, 182, 849
AlwI GGATC 3 cut(s) 355, 965, 1207
AlwNI CAGNNNCTG 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 1044
AoxI GGCC 1 cut(s) 683
ApeKI GCWGC 2 cut(s) 679, 1334
ArsI GACNNNNNNTTYG 2 cut(s) 1235, 1267
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 2 cut(s) 867, 1271
AspS9I GGNCC 2 cut(s) 209, 1238
AsuC2I CCSGG 1 cut(s) 1422
AsuHPI GGTGA 2 cut(s) 1112, 1250
AvaI CYCGRG 1 cut(s) 1044
AvaII GGWCC 2 cut(s) 209, 1238
BauI CACGAG 2 cut(s) 638, 699
BbsI GAAGAC 2 cut(s) 42, 1313
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 2 cut(s) 691, 1346
BccI CCATC 9 cut(s) 90, 101, 245, 286, 447, 733, 1310, 1352, 1416
BceAI ACGGC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 668, 702
BciT130I CCWGG 1 cut(s) 1016
BciVI GTATCC 1 cut(s) 987
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 1422
BcoDI GTCTC 3 cut(s) 162, 182, 849
BfaI CTAG 3 cut(s) 161, 366, 1403
BfmI CTRYAG 2 cut(s) 219, 1332
BfuAI ACCTGC 3 cut(s) 149, 551, 893
BfuI GTATCC 1 cut(s) 987
BglII AGATCT 1 cut(s) 315
BisI GCNGC 4 cut(s) 6, 680, 683, 1335
BlpI GCTNAGC 1 cut(s) 1187
BlsI GCNGC 4 cut(s) 7, 681, 684, 1336
Bme1390I CCNGG 2 cut(s) 1016, 1422
Bme18I GGWCC 2 cut(s) 209, 1238
BmeT110I CYCGRG 1 cut(s) 1044
BmgT120I GGNCC 2 cut(s) 209, 1238
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 1016, 1422
BmsI GCATC 4 cut(s) 214, 555, 1043, 1346
BpiI GAAGAC 2 cut(s) 42, 1313
BplI GAGNNNNNCTC 2 cut(s) 632, 664
Bpu10I CCTNAGC 1 cut(s) 868
Bpu1102I GCTNAGC 1 cut(s) 1187
BpuMI CCSGG 1 cut(s) 1422
BsaBI GATNNNNATC 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 592, 1043
Bsc4I CCNNNNNNNGG 4 cut(s) 701, 869, 1049, 1166
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 1 cut(s) 1016
BseDI CCNNGG 2 cut(s) 592, 1043
BseGI GGATG 3 cut(s) 270, 1024, 1150
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 701, 869, 1049, 1166
BseMII CTCAG 4 cut(s) 59, 333, 720, 882
BseRI GAGGAG 3 cut(s) 650, 684, 687
BseXI GCAGC 2 cut(s) 691, 1346
Bsh1236I CGCG 1 cut(s) 865
BshFI GGCC 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 1044
BsiSI CCGG 1 cut(s) 1422
BslFI GGGAC 4 cut(s) 222, 529, 657, 838
BslI CCNNNNNNNGG 4 cut(s) 701, 869, 1049, 1166
BsmAI GTCTC 3 cut(s) 162, 182, 849
BsmFI GGGAC 4 cut(s) 222, 529, 657, 838
BsnI GGCC 1 cut(s) 685
BsoBI CYCGRG 1 cut(s) 1044
Bsp1286I GDGCHC 1 cut(s) 709
Bsp1407I TGTACA 1 cut(s) 745
Bsp143I GATC 6 cut(s) 315, 360, 397, 957, 1199, 1222
Bsp1720I GCTNAGC 1 cut(s) 1187
BspACI CCGC 9 cut(s) 5, 8, 32, 682, 714, 857, 863, 1098, 1305
BspANI GGCC 1 cut(s) 685
BspCNI CTCAG 4 cut(s) 58, 332, 721, 881
BspFNI CGCG 1 cut(s) 865
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 1336
BspMI ACCTGC 3 cut(s) 149, 551, 893
BspPI GGATC 3 cut(s) 355, 965, 1207
BsrGI TGTACA 1 cut(s) 745
BssECI CCNNGG 2 cut(s) 592, 1043
BssMI GATC 6 cut(s) 315, 360, 397, 957, 1199, 1222
BssNI GRCGYC 1 cut(s) 436
BssSI CACGAG 2 cut(s) 638, 699
Bst2BI CACGAG 2 cut(s) 638, 699
Bst2UI CCWGG 1 cut(s) 1016
Bst4CI ACNGT 4 cut(s) 176, 593, 978, 1262
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 436
BstAUI TGTACA 1 cut(s) 745
BstC8I GCNNGC 4 cut(s) 146, 166, 1267, 1332
BstDEI CTNAG 6 cut(s) 45, 319, 729, 868, 1187, 1349
BstDSI CCRYGG 1 cut(s) 592
BstENI CCTNNNNNAGG 1 cut(s) 1164
BstF5I GGATG 3 cut(s) 270, 1024, 1150
BstFNI CGCG 1 cut(s) 865
BstHHI GCGC 2 cut(s) 867, 1271
BstKTI GATC 6 cut(s) 318, 363, 400, 960, 1202, 1225
BstMAI GTCTC 3 cut(s) 162, 182, 849
BstMBI GATC 6 cut(s) 315, 360, 397, 957, 1199, 1222
BstMWI GCNNNNNNNGC 3 cut(s) 483, 713, 871
BstNI CCWGG 1 cut(s) 1016
BstNSI RCATGY 1 cut(s) 1435
BstSCI CCNGG 2 cut(s) 1014, 1420
BstSFI CTRYAG 2 cut(s) 219, 1332
BstUI CGCG 1 cut(s) 865
BstV1I GCAGC 2 cut(s) 691, 1346
BstV2I GAAGAC 2 cut(s) 42, 1313
BstX2I RGATCY 2 cut(s) 315, 957
BstYI RGATCY 2 cut(s) 315, 957
BsuI GTATCC 1 cut(s) 987
BsuRI GGCC 1 cut(s) 685
BtgI CCRYGG 1 cut(s) 592
BtsCI GGATG 3 cut(s) 270, 1024, 1150
BtsIMutI CAGTG 1 cut(s) 1212
BveI ACCTGC 3 cut(s) 149, 551, 893
Cac8I GCNNGC 4 cut(s) 146, 166, 1267, 1332
CaiI CAGNNNCTG 1 cut(s) 180
CfoI GCGC 2 cut(s) 867, 1271
Cfr13I GGNCC 2 cut(s) 209, 1238
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 746
CviAII CATG 9 cut(s) 261, 453, 615, 749, 789, 828, 835, 1372, 1432
CviQI GTAC 1 cut(s) 746
DdeI CTNAG 6 cut(s) 45, 319, 729, 868, 1187, 1349
DpnI GATC 6 cut(s) 317, 362, 399, 959, 1201, 1224
DpnII GATC 6 cut(s) 315, 360, 397, 957, 1199, 1222
DraI TTTAAA 1 cut(s) 231
DraIII CACNNNGTG 1 cut(s) 838
DrdI GACNNNNNNGTC 1 cut(s) 1245
DseDI GACNNNNNNGTC 1 cut(s) 1245
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 4 cut(s) 21, 23, 703, 1320
Eco47I GGWCC 2 cut(s) 209, 1238
Eco57I CTGAAG 2 cut(s) 828, 1310
Eco88I CYCGRG 1 cut(s) 1044
EcoNI CCTNNNNNAGG 1 cut(s) 1164
EcoRII CCWGG 1 cut(s) 1014
FaeI CATG 9 cut(s) 264, 456, 618, 752, 792, 831, 838, 1375, 1435
FalI AAGNNNNNCTT 2 cut(s) 1237, 1269
FaqI GGGAC 4 cut(s) 222, 529, 657, 838
FatI CATG 9 cut(s) 260, 452, 614, 748, 788, 827, 834, 1371, 1431
FauNDI CATATG 2 cut(s) 463, 1234
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 4 cut(s) 6, 680, 683, 1335
FokI GGATG 3 cut(s) 277, 1031, 1157
Fsp4HI GCNGC 4 cut(s) 6, 680, 683, 1335
FspBI CTAG 3 cut(s) 161, 366, 1403
GlaI GCGC 2 cut(s) 866, 1270
GluI GCNGC 4 cut(s) 6, 680, 683, 1335
HaeIII GGCC 1 cut(s) 685
HapII CCGG 1 cut(s) 1422
HgaI GACGC 1 cut(s) 444
HhaI GCGC 2 cut(s) 867, 1271
Hin1I GRCGYC 1 cut(s) 436
Hin1II CATG 9 cut(s) 264, 456, 618, 752, 792, 831, 838, 1375, 1435
Hin6I GCGC 2 cut(s) 865, 1269
HinP1I GCGC 2 cut(s) 865, 1269
HindIII AAGCTT 1 cut(s) 1217
HpaII CCGG 1 cut(s) 1422
HphI GGTGA 2 cut(s) 1112, 1250
Hpy166II GTNNAC 2 cut(s) 39, 197
Hpy188I TCNGA 6 cut(s) 172, 322, 360, 536, 808, 1399
Hpy188III TCNNGA 5 cut(s) 443, 797, 971, 1025, 1087
Hpy8I GTNNAC 2 cut(s) 39, 197
HpyAV CCTTC 2 cut(s) 139, 1170
HpyCH4III ACNGT 4 cut(s) 176, 593, 978, 1262
HpyCH4V TGCA 5 cut(s) 144, 546, 679, 888, 1334
HpyF10VI GCNNNNNNNGC 3 cut(s) 483, 713, 871
HpyF3I CTNAG 6 cut(s) 45, 319, 729, 868, 1187, 1349
Hsp92I GRCGYC 1 cut(s) 436
Hsp92II CATG 9 cut(s) 264, 456, 618, 752, 792, 831, 838, 1375, 1435
HspAI GCGC 2 cut(s) 865, 1269
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 6 cut(s) 315, 360, 397, 957, 1199, 1222
LmnI GCTCC 2 cut(s) 173, 1378
Lsp1109I GCAGC 2 cut(s) 691, 1346
LweI GCATC 4 cut(s) 214, 555, 1043, 1346
MaeI CTAG 3 cut(s) 161, 366, 1403
MaeIII GTNAC 2 cut(s) 308, 1052
MalI GATC 6 cut(s) 317, 362, 399, 959, 1201, 1224
MboI GATC 6 cut(s) 315, 360, 397, 957, 1199, 1222
MflI RGATCY 2 cut(s) 315, 957
MhlI GDGCHC 1 cut(s) 709
MluCI AATT 2 cut(s) 67, 851
MlyI GAGTC 5 cut(s) 511, 639, 780, 851, 1057
MmeI TCCRAC 2 cut(s) 195, 1122
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 6 cut(s) 89, 230, 393, 507, 1149, 1193
MslI CAYNNNNRTG 2 cut(s) 444, 1207
MspA1I CMGCKG 1 cut(s) 682
MspI CCGG 1 cut(s) 1422
MspR9I CCNGG 2 cut(s) 1016, 1422
MvaI CCWGG 1 cut(s) 1016
MvnI CGCG 1 cut(s) 865
MwoI GCNNNNNNNGC 3 cut(s) 483, 713, 871
NciI CCSGG 1 cut(s) 1422
NdeI CATATG 2 cut(s) 463, 1234
NdeII GATC 6 cut(s) 315, 360, 397, 957, 1199, 1222
NlaIII CATG 9 cut(s) 264, 456, 618, 752, 792, 831, 838, 1375, 1435
NlaIV GGNNCC 1 cut(s) 210
NmeAIII GCCGAG 1 cut(s) 1037
NmuCI GTSAC 2 cut(s) 308, 1052
NspI RCATGY 1 cut(s) 1435
PaqCI CACCTGC 1 cut(s) 551
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 1014
PkrI GCNGC 4 cut(s) 7, 681, 684, 1336
PleI GAGTC 5 cut(s) 511, 639, 779, 850, 1057
PpsI GAGTC 5 cut(s) 511, 639, 779, 850, 1057
PsiI TTATAA 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 1014
PspGI CCWGG 1 cut(s) 1014
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 2 cut(s) 209, 1238
PstI CTGCAG 1 cut(s) 1336
PstNI CAGNNNCTG 1 cut(s) 180
PsuI RGATCY 2 cut(s) 315, 957
RsaI GTAC 1 cut(s) 747
RsaNI GTAC 1 cut(s) 746
RseI CAYNNNNRTG 2 cut(s) 444, 1207
SaqAI TTAA 6 cut(s) 89, 230, 393, 507, 1149, 1193
SatI GCNGC 4 cut(s) 6, 680, 683, 1335
Sau3AI GATC 6 cut(s) 315, 360, 397, 957, 1199, 1222
Sau96I GGNCC 2 cut(s) 209, 1238
SchI GAGTC 5 cut(s) 511, 639, 780, 851, 1057
ScrFI CCNGG 2 cut(s) 1016, 1422
SduI GDGCHC 1 cut(s) 709
SfaNI GCATC 4 cut(s) 214, 555, 1043, 1346
SfcI CTRYAG 2 cut(s) 219, 1332
SinI GGWCC 2 cut(s) 209, 1238
SmiMI CAYNNNNRTG 2 cut(s) 444, 1207
Sse9I AATT 2 cut(s) 67, 851
SsiI CCGC 9 cut(s) 5, 8, 32, 682, 714, 857, 863, 1098, 1305
SspMI CTAG 3 cut(s) 161, 366, 1403
StyD4I CCNGG 2 cut(s) 1014, 1420
TaaI ACNGT 4 cut(s) 176, 593, 978, 1262
TaqI TCGA 2 cut(s) 1081, 1225
TaqII GACCGA 1 cut(s) 1239
TasI AATT 2 cut(s) 67, 851
TatI WGTACW 1 cut(s) 745
TauI GCSGC 2 cut(s) 8, 685
Tru1I TTAA 6 cut(s) 89, 230, 393, 507, 1149, 1193
Tru9I TTAA 6 cut(s) 89, 230, 393, 507, 1149, 1193
TscAI CASTG 1 cut(s) 1212
TseFI GTSAC 2 cut(s) 308, 1052
TseI GCWGC 2 cut(s) 679, 1334
Tsp45I GTSAC 2 cut(s) 308, 1052
TspDTI ATGAA 4 cut(s) 249, 354, 1152, 1360
TspGWI ACGGA 1 cut(s) 1212
TspRI CASTG 1 cut(s) 1212
VpaK11BI GGWCC 2 cut(s) 209, 1238
XagI CCTNNNNNAGG 1 cut(s) 1164
XceI RCATGY 1 cut(s) 1435
XmiI GTMKAC 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 3 cut(s) 161, 366, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.