FvH4_6g37110

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
29174069 .. 29177746
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37110.t1

Sequence Viewer

Length: 1536 bp
ATGGAAAATTTACCGTCATCTTCTTCACCACCATGGATTCAAAAGAAAACCAAAAATAGAAACCCATATTTTACCATGAACAATCTCCACAGCAAATCAAACAAACCCAGTTTTGGAGCTCACTGTCATAACAATCATAGCCAAAAGAAACAAGCCATGGCAGAAACCAGTACCAGCAGCAGCTGCAATGGCAGCTCTCCATTGACCCAAATAGCCCAAGACCACCTCTTCTCAATCTTGCTGCTCCTCCCTGTTGACTCTATTCTCAGCTTTGCTATGACATGCAAGAAATTCAGAGCCCTCACAGCTTCTGATACTCTTTGGGAGTATATATGCCAAAGGGACTGGGGGCCCAGATCAGTTGAGGCCTTCAAGGCTTCAAATTCTAATCAGCAGTTGCCTTGGATGAGAATTTACAAGCAAGTTTCTGGGGTTGACTCTGTGTATTGCCATAGATTGTGTGCTGATCCAGATGCTGAATTGGTGTTTCCAACTCCCAGGGCCTCTCATTCCCTCAATTTTGTGTCTGATTGCTTGGTCTTGTTTGGTGGTGGCTGTGAGGGAGGACGCCATCTAGATGACACATGGGTGGCATACATGGGCAATGATTTTCAGAGATTGCTGAAGTGGCAGAGGATCAGTTCAGGCAGTCCGAGTGGAAGATTTGGGCATACATGTGCTGTAATTGATGATTGTCTTGTTCTATTTGGAGGTATAAATGACAATGGAAGCCGTCAAAACGATACATGGGTGGGGCAAGTAGCATTCCATGAGACCCTTGGTATCACATTGTCTTGGAGGCTGCTTGTGGTGGGGGACAATGCACCTCCCCAGCGAGGAGCTCATGCAGCATGCTGCATTGAAGGTAGAAAGATGGTTATCCATGGAGGAATTGGGCGGTTTGGTGTGAGACTGAGTGACACATGGGTATTGGAACTTTCAGAAAACTTTCGAACTGGTACTTGGTGTGAAATCGTTACTCAGCCATCTCCTGCAGCTCGCTCAGGTCACACGTTAACTTGCATTGGGGGTACCAGAACTGTTTTATTTGGAGGGAGAGGATTGGGATATGATGTGCTTCATGATCTTTGGCTCTTGGATATTTGTGAGGGTCAACCACAATGGCTACAAGTACTATATGAATTACAAAATATTCCTGGAGGAGTTTCCCTCCCACGGGTTGGTCACTCAGCTACACTCATCTTAGGAGGTCGTTTGCTGATATGTGGAGGGGAAGATTCATATAGACACCGGAAGAATGACTTCTGGGTTTTAGACATTACTGCAGTTCCCTCCATTACTGTGCAGCCAACTATGTTGAACTCTATGCAGTTATTTGCAAAAATGTGGAAAAGATTCAAGACAAAGGGTCATATACCCAACTGTCGCTCATTTCATCGTGCCTGTGCAGATCAATCTGGCCGTTGCCTGTTTATGTTTGGCGGAATGGTGGATGGATTACTTCAACCTGCTGACCCAGCTGGACTGAGGTTTGATGGGGAGCTCCTTCTTGTGGAGCTTGTGCTTCAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

512

Amino Acids

56.61

Weight (kDa)

8.36

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 76 - 114 8.2e-06 F-box-like
Beta-prop_FBX42 PF13415 160 - 316 1.5e-23 FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 161 - 316 1.7e-24 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 209 - 300 4.2e-08 Attractin/LZTR1 beta-propeller
Kelch_HCF PF13854 209 - 485 7.1e-13 Host cell factor, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 263 - 428 4.3e-25 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 316 - 484 3.3e-07 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 317 - 428 8.9e-14 FBX42, beta-propeller domain
Beta-prop_TYW4 PF13418 331 - 428 3.8e-08 tRNA wybutosine-synthesizing protein 4, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013494)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1477
Acc65I GGTACC 1 cut(s) 1031
AccB1I GGYRCC 1 cut(s) 1031
AccB7I CCANNNNNTGG 1 cut(s) 1181
AciI CCGC 2 cut(s) 898, 1443
AclWI GGATC 2 cut(s) 461, 644
AcoI YGGCCR 1 cut(s) 1420
AcsI RAATTY 4 cut(s) 7, 290, 382, 411
AcuI CTGAAG 2 cut(s) 644, 1511
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 4 cut(s) 172, 961, 1033, 1134
AfiI CCNNNNNNNGG 6 cut(s) 113, 836, 1176, 1177, 1181, 1513
AflIII ACRYGT 2 cut(s) 674, 1011
AgsI TTSAA 7 cut(s) 41, 373, 381, 863, 1321, 1360, 1466
AhdI GACNNNNNGTC 1 cut(s) 1368
AjnI CCWGG 2 cut(s) 497, 1156
AjuI GAANNNNNNNTTGG 2 cut(s) 946, 978
AleI CACNNNNGTG 1 cut(s) 587
Alw21I GWGCWC 3 cut(s) 121, 844, 1506
Alw26I GTCTC 2 cut(s) 767, 904
AlwI GGATC 2 cut(s) 461, 644
AlwNI CAGNNNCTG 3 cut(s) 183, 311, 476
AoxI GGCC 4 cut(s) 350, 366, 501, 1420
ApaI GGGCCC 1 cut(s) 354
ApoI RAATTY 4 cut(s) 7, 290, 382, 411
Asp700I GAANNNNTTC 3 cut(s) 948, 1262, 1355
Asp718I GGTACC 1 cut(s) 1031
AspS9I GGNCC 3 cut(s) 350, 351, 501
AsuHPI GGTGA 1 cut(s) 18
AsuII TTCGAA 1 cut(s) 952
BaeGI GKGCMC 1 cut(s) 354
BaeI ACNNNNGTAYC 2 cut(s) 735, 768
BanI GGYRCC 1 cut(s) 1031
BanII GRGCYC 5 cut(s) 121, 301, 354, 844, 1506
Bbv12I GWGCWC 3 cut(s) 121, 844, 1506
BccI CCATC 5 cut(s) 579, 868, 994, 1448, 1490
BceAI ACGGC 2 cut(s) 717, 1407
BciT130I CCWGG 2 cut(s) 499, 1158
BcoDI GTCTC 2 cut(s) 767, 904
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 2 cut(s) 993, 1284
BfuAI ACCTGC 1 cut(s) 1477
BglI GCCNNNNNGGC 1 cut(s) 374
BmcAI AGTACT 1 cut(s) 1134
Bme1390I CCNGG 2 cut(s) 499, 1158
BmeRI GACNNNNNGTC 1 cut(s) 1368
BmgT120I GGNCC 3 cut(s) 350, 351, 501
BmiI GGNNCC 3 cut(s) 351, 352, 1033
BmrFI CCNGG 2 cut(s) 499, 1158
BmrI ACTGGG 2 cut(s) 102, 355
BmsI GCATC 1 cut(s) 463
BmuI ACTGGG 2 cut(s) 102, 355
BplI GAGNNNNNCTC 2 cut(s) 1155, 1187
BpmI CTGGAG 1 cut(s) 1179
Bpu10I CCTNAGC 1 cut(s) 1003
Bpu14I TTCGAA 1 cut(s) 952
BsaBI GATNNNNATC 1 cut(s) 878
BsaHI GRCGYC 1 cut(s) 568
BsaI GGTCTC 1 cut(s) 767
BsaJI CCNNGG 8 cut(s) 32, 156, 401, 497, 498, 778, 883, 1175
BsaWI WCCGGW 1 cut(s) 1251
Bsc4I CCNNNNNNNGG 6 cut(s) 113, 836, 1176, 1177, 1181, 1513
Bse1I ACTGG 4 cut(s) 108, 168, 350, 961
Bse3DI GCAATG 2 cut(s) 193, 610
Bse8I GATNNNNATC 1 cut(s) 878
BseBI CCWGG 2 cut(s) 499, 1158
BseDI CCNNGG 8 cut(s) 32, 156, 401, 497, 498, 778, 883, 1175
BseGI GGATG 2 cut(s) 411, 1459
BseJI GATNNNNATC 1 cut(s) 878
BseLI CCNNNNNNNGG 6 cut(s) 113, 836, 1176, 1177, 1181, 1513
BseMI GCAATG 2 cut(s) 193, 610
BseMII CTCAG 6 cut(s) 280, 905, 995, 1017, 1203, 1478
BseNI ACTGG 4 cut(s) 108, 168, 350, 961
BseRI GAGGAG 3 cut(s) 236, 852, 1176
BseSI GKGCMC 1 cut(s) 354
BseYI CCCAGC 2 cut(s) 831, 1477
BsgI GTGCAG 2 cut(s) 1325, 1428
BshFI GGCC 4 cut(s) 352, 368, 503, 1422
BshNI GGYRCC 1 cut(s) 1031
BsiHKAI GWGCWC 3 cut(s) 121, 844, 1506
BsiSI CCGG 1 cut(s) 1252
BslFI GGGAC 2 cut(s) 356, 830
BslI CCNNNNNNNGG 6 cut(s) 113, 836, 1176, 1177, 1181, 1513
BsmAI GTCTC 2 cut(s) 767, 904
BsmFI GGGAC 2 cut(s) 356, 830
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 4 cut(s) 352, 368, 503, 1422
Bso31I GGTCTC 1 cut(s) 767
Bsp119I TTCGAA 1 cut(s) 952
Bsp120I GGGCCC 1 cut(s) 350
Bsp1286I GDGCHC 5 cut(s) 121, 301, 354, 844, 1506
Bsp143I GATC 5 cut(s) 356, 466, 636, 1084, 1411
Bsp19I CCATGG 3 cut(s) 32, 156, 883
BspACI CCGC 2 cut(s) 898, 1443
BspANI GGCC 4 cut(s) 352, 368, 503, 1422
BspCNI CTCAG 6 cut(s) 279, 906, 994, 1016, 1202, 1479
BspHI TCATGA 1 cut(s) 1081
BspLI GGNNCC 3 cut(s) 351, 352, 1033
BspMAI CTGCAG 2 cut(s) 997, 1288
BspMI ACCTGC 1 cut(s) 1477
BspPI GGATC 2 cut(s) 461, 644
BspT104I TTCGAA 1 cut(s) 952
BspT107I GGYRCC 1 cut(s) 1031
BspTNI GGTCTC 1 cut(s) 767
BsrDI GCAATG 2 cut(s) 193, 610
BsrI ACTGG 4 cut(s) 108, 168, 350, 961
BssECI CCNNGG 8 cut(s) 32, 156, 401, 497, 498, 778, 883, 1175
BssMI GATC 5 cut(s) 356, 466, 636, 1084, 1411
BssNI GRCGYC 1 cut(s) 568
BssT1I CCWWGG 5 cut(s) 32, 156, 401, 778, 883
Bst2UI CCWGG 2 cut(s) 499, 1158
Bst4CI ACNGT 5 cut(s) 15, 125, 1042, 1303, 1385
Bst6I CTCTTC 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 568
BstAPI GCANNNNNTGC 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 952
BstC8I GCNNGC 2 cut(s) 853, 1000
BstDEI CTNAG 7 cut(s) 266, 914, 981, 1003, 1189, 1204, 1487
BstDSI CCRYGG 4 cut(s) 32, 156, 883, 1175
BstF5I GGATG 2 cut(s) 411, 1459
BstKTI GATC 5 cut(s) 359, 469, 639, 1087, 1414
BstMAI GTCTC 2 cut(s) 767, 904
BstMBI GATC 5 cut(s) 356, 466, 636, 1084, 1411
BstMWI GCNNNNNNNGC 8 cut(s) 183, 189, 192, 305, 374, 628, 848, 1478
BstNI CCWGG 2 cut(s) 499, 1158
BstNSI RCATGY 3 cut(s) 285, 678, 855
BstSCI CCNGG 2 cut(s) 497, 1156
BstSFI CTRYAG 2 cut(s) 993, 1284
BstSLI GKGCMC 1 cut(s) 354
BsuRI GGCC 4 cut(s) 352, 368, 503, 1422
BtgI CCRYGG 4 cut(s) 32, 156, 883, 1175
BtsCI GGATG 2 cut(s) 411, 1459
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 1477
Cac8I GCNNGC 2 cut(s) 853, 1000
CaiI CAGNNNCTG 3 cut(s) 183, 311, 476
CciI TCATGA 1 cut(s) 1081
Cfr13I GGNCC 3 cut(s) 350, 351, 501
CseI GACGC 1 cut(s) 576
Csp6I GTAC 4 cut(s) 171, 960, 1032, 1133
CviQI GTAC 4 cut(s) 171, 960, 1032, 1133
DdeI CTNAG 7 cut(s) 266, 914, 981, 1003, 1189, 1204, 1487
DpnI GATC 5 cut(s) 358, 468, 638, 1086, 1413
DpnII GATC 5 cut(s) 356, 466, 636, 1084, 1411
DriI GACNNNNNGTC 1 cut(s) 1368
EaeI YGGCCR 1 cut(s) 1420
Eam1104I CTCTTC 1 cut(s) 233
Eam1105I GACNNNNNGTC 1 cut(s) 1368
EarI CTCTTC 1 cut(s) 233
EciI GGCGGA 1 cut(s) 1458
Ecl136II GAGCTC 3 cut(s) 119, 842, 1504
Eco130I CCWWGG 5 cut(s) 32, 156, 401, 778, 883
Eco147I AGGCCT 1 cut(s) 368
Eco24I GRGCYC 5 cut(s) 121, 301, 354, 844, 1506
Eco31I GGTCTC 1 cut(s) 767
Eco53kI GAGCTC 3 cut(s) 119, 842, 1504
Eco57I CTGAAG 2 cut(s) 644, 1511
EcoICRI GAGCTC 3 cut(s) 119, 842, 1504
EcoO109I RGGNCCY 2 cut(s) 350, 501
EcoRII CCWGG 2 cut(s) 497, 1156
EcoT14I CCWWGG 5 cut(s) 32, 156, 401, 778, 883
EcoT38I GRGCYC 5 cut(s) 121, 301, 354, 844, 1506
ErhI CCWWGG 5 cut(s) 32, 156, 401, 778, 883
FalI AAGNNNNNCTT 2 cut(s) 1247, 1279
FaqI GGGAC 2 cut(s) 356, 830
FokI GGATG 2 cut(s) 418, 1466
FriOI GRGCYC 5 cut(s) 121, 301, 354, 844, 1506
FspBI CTAG 1 cut(s) 575
GsaI CCCAGC 2 cut(s) 835, 1481
GsuI CTGGAG 1 cut(s) 1179
HaeIII GGCC 4 cut(s) 352, 368, 503, 1422
HapII CCGG 1 cut(s) 1252
HgaI GACGC 1 cut(s) 576
Hin1I GRCGYC 1 cut(s) 568
HincII GTYRAC 4 cut(s) 256, 436, 1017, 1115
HindII GTYRAC 4 cut(s) 256, 436, 1017, 1115
HinfI GANTC 5 cut(s) 37, 257, 437, 1238, 1356
HpaI GTTAAC 1 cut(s) 1017
HpaII CCGG 1 cut(s) 1252
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 4 cut(s) 256, 436, 1017, 1115
Hpy188I TCNGA 6 cut(s) 296, 313, 529, 615, 654, 943
Hpy188III TCNNGA 4 cut(s) 470, 575, 1082, 1360
Hpy8I GTNNAC 4 cut(s) 256, 436, 1017, 1115
HpyAV CCTTC 3 cut(s) 379, 857, 1517
HpyCH4III ACNGT 5 cut(s) 15, 125, 1042, 1303, 1385
HpyCH4IV ACGT 1 cut(s) 1013
HpyF10VI GCNNNNNNNGC 8 cut(s) 183, 189, 192, 305, 374, 628, 848, 1478
HpyF3I CTNAG 7 cut(s) 266, 914, 981, 1003, 1189, 1204, 1487
HpySE526I ACGT 1 cut(s) 1013
Hsp92I GRCGYC 1 cut(s) 568
KpnI GGTACC 1 cut(s) 1035
KspAI GTTAAC 1 cut(s) 1017
Kzo9I GATC 5 cut(s) 356, 466, 636, 1084, 1411
LmnI GCTCC 6 cut(s) 116, 249, 839, 1501, 1509, 1516
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 1013
MaeIII GTNAC 4 cut(s) 917, 976, 1007, 1184
MalI GATC 5 cut(s) 358, 468, 638, 1086, 1413
MboI GATC 5 cut(s) 356, 466, 636, 1084, 1411
MboII GAAGA 6 cut(s) 12, 15, 220, 672, 1247, 1267
MhlI GDGCHC 5 cut(s) 121, 301, 354, 844, 1506
MluCI AATT 9 cut(s) 7, 290, 382, 411, 479, 517, 684, 891, 1142
MlyI GAGTC 2 cut(s) 251, 431
MmeI TCCRAC 1 cut(s) 515
MroXI GAANNNNTTC 3 cut(s) 948, 1262, 1355
MseI TTAA 1 cut(s) 1016
MslI CAYNNNNRTG 5 cut(s) 31, 576, 587, 675, 1301
MspA1I CMGCKG 2 cut(s) 183, 1481
MspI CCGG 1 cut(s) 1252
MspR9I CCNGG 2 cut(s) 499, 1158
Mva1269I GAATGC 1 cut(s) 764
MvaI CCWGG 2 cut(s) 499, 1158
MwoI GCNNNNNNNGC 8 cut(s) 183, 189, 192, 305, 374, 628, 848, 1478
NcoI CCATGG 3 cut(s) 32, 156, 883
NdeII GATC 5 cut(s) 356, 466, 636, 1084, 1411
NlaIV GGNNCC 3 cut(s) 351, 352, 1033
NmuCI GTSAC 3 cut(s) 917, 1007, 1184
NspI RCATGY 3 cut(s) 285, 678, 855
NspV TTCGAA 1 cut(s) 952
OliI CACNNNNGTG 1 cut(s) 587
PaeI GCATGC 1 cut(s) 855
PagI TCATGA 1 cut(s) 1081
PasI CCCWGGG 1 cut(s) 498
PceI AGGCCT 1 cut(s) 368
PciI ACATGT 1 cut(s) 674
PctI GAATGC 1 cut(s) 764
PdmI GAANNNNTTC 3 cut(s) 948, 1262, 1355
PfeI GAWTC 3 cut(s) 37, 1238, 1356
PflMI CCANNNNNTGG 1 cut(s) 1181
PfoI TCCNGGA 1 cut(s) 1156
PleI GAGTC 2 cut(s) 251, 431
PpsI GAGTC 2 cut(s) 251, 431
PscI ACATGT 1 cut(s) 674
Psp124BI GAGCTC 3 cut(s) 121, 844, 1506
Psp6I CCWGG 2 cut(s) 497, 1156
PspFI CCCAGC 2 cut(s) 831, 1477
PspGI CCWGG 2 cut(s) 497, 1156
PspN4I GGNNCC 3 cut(s) 351, 352, 1033
PspOMI GGGCCC 1 cut(s) 350
PspPI GGNCC 3 cut(s) 350, 351, 501
PstI CTGCAG 2 cut(s) 997, 1288
PstNI CAGNNNCTG 3 cut(s) 183, 311, 476
PvuII CAGCTG 2 cut(s) 183, 1481
RsaI GTAC 4 cut(s) 172, 961, 1033, 1134
RsaNI GTAC 4 cut(s) 171, 960, 1032, 1133
RseI CAYNNNNRTG 5 cut(s) 31, 576, 587, 675, 1301
SacI GAGCTC 3 cut(s) 121, 844, 1506
SaqAI TTAA 1 cut(s) 1016
Sau3AI GATC 5 cut(s) 356, 466, 636, 1084, 1411
Sau96I GGNCC 3 cut(s) 350, 351, 501
ScaI AGTACT 1 cut(s) 1134
SchI GAGTC 2 cut(s) 251, 431
ScrFI CCNGG 2 cut(s) 499, 1158
SduI GDGCHC 5 cut(s) 121, 301, 354, 844, 1506
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 2 cut(s) 993, 1284
SfuI TTCGAA 1 cut(s) 952
SmiMI CAYNNNNRTG 5 cut(s) 31, 576, 587, 675, 1301
SphI GCATGC 1 cut(s) 855
Sse9I AATT 9 cut(s) 7, 290, 382, 411, 479, 517, 684, 891, 1142
SseBI AGGCCT 1 cut(s) 368
SsiI CCGC 2 cut(s) 898, 1443
SspI AATATT 1 cut(s) 1153
SspMI CTAG 1 cut(s) 575
SstI GAGCTC 3 cut(s) 121, 844, 1506
StuI AGGCCT 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 497, 1156
StyI CCWWGG 5 cut(s) 32, 156, 401, 778, 883
TaaI ACNGT 5 cut(s) 15, 125, 1042, 1303, 1385
TaiI ACGT 1 cut(s) 1016
TaqI TCGA 1 cut(s) 952
TasI AATT 9 cut(s) 7, 290, 382, 411, 479, 517, 684, 891, 1142
TatI WGTACW 1 cut(s) 1132
TfiI GAWTC 3 cut(s) 37, 1238, 1356
Tru1I TTAA 1 cut(s) 1016
Tru9I TTAA 1 cut(s) 1016
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 3 cut(s) 917, 1007, 1184
Tsp45I GTSAC 3 cut(s) 917, 1007, 1184
TspDTI ATGAA 5 cut(s) 92, 1070, 1155, 1230, 1385
TspRI CASTG 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 1181
XapI RAATTY 4 cut(s) 7, 290, 382, 411
XbaI TCTAGA 1 cut(s) 574
XceI RCATGY 3 cut(s) 285, 678, 855
XcmI CCANNNNNNNNNTGG 2 cut(s) 776, 890
XmnI GAANNNNTTC 3 cut(s) 948, 1262, 1355
XspI CTAG 1 cut(s) 575
ZrmI AGTACT 1 cut(s) 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.