pycom09g08050

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013494
Physical Location & Seq
Forward (+)
6171797 .. 6172132
336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08050.2

Sequence Viewer

Length: 246 bp
ATGGTGTCTGTACTCTATGAGCTACAAAATGTTCCAGGAGGAGTTTCTCTTCCACGGGTTGGTCACTCATCCACACTCATGTTAGGCGCCCATCTGCTGATCTGTGGGGGAGAAGATTCGTACAGACACCGGAAAAATGATTTCTGGATTTTAGACTTAAATGCAGCTCCATCCATTACAGTGCAGCAGCCAACTACGCTGAACTCTATGCAGGTATTGGCAAAAAGGTGGAAGAGCTCGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_3 Kelch_4 Kelch_5

Protein Analysis

82

Amino Acids

8.97

Weight (kDa)

9.03

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51550
fragaria_vesca FvH4_6g37110
malus_domestica MD09G1161500.v1.1 MD17G1147400.v1.1
prunus_persica Prupe.3G020600_v2.0.a1
pyrus_communis pycom09g08000 pycom09g08050 pycom17g14000
rosa_chinensis RchiOBHm_Chr2g0149671
rosa_laevigata RLG00000020436
rosa_multiflora Rmu_sc0014307.1_g000005
rosa_roxburghii Rroxscaffold_2G00097810
rosa_rugosa Rorug02G0414300
rosa_samantha Rh2AG474500 Rh2BG486200 Rh2CG460200 Rh2DG495500
rosa_wichuraiana Rw2G038690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 59
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 12, 122
AfiI CCNNNNNNNGG 1 cut(s) 59
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 3 cut(s) 22, 167, 237
AluI AGCT 3 cut(s) 22, 167, 237
Alw21I GWGCWC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 164, 184, 187
AspLEI GCGC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 3 cut(s) 176, 196, 199
BccI CCATC 2 cut(s) 99, 178
BciT130I CCWGG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 3 cut(s) 165, 185, 188
BlsI GCNGC 3 cut(s) 166, 186, 189
Bme1390I CCNGG 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 68, 170
BseLI CCNNNNNNNGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 3 cut(s) 176, 196, 199
BsgI GTGCAG 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 54, 227
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 68, 170
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 176, 196, 199
BtgI CCRYGG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 68, 170
BtsIMutI CAGTG 2 cut(s) 186, 241
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 239
CfoI GCGC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 11, 121
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 22, 167, 190, 237
CviKI_1 RGCY 4 cut(s) 22, 167, 190, 237
CviQI GTAC 2 cut(s) 11, 121
DinI GGCGCC 1 cut(s) 88
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 54, 227
EarI CTCTTC 2 cut(s) 54, 227
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 239
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 18, 80, 209
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 165, 185, 188
FokI GGATG 2 cut(s) 55, 157
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 3 cut(s) 165, 185, 188
GlaI GCGC 1 cut(s) 88
GluI GCNGC 3 cut(s) 165, 185, 188
HaeII RGCGCY 1 cut(s) 90
HapII CCGG 1 cut(s) 130
HhaI GCGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 164, 184, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 87
KasI GGCGCC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 99
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 21, 48, 130, 143, 197
Lsp1109I GCAGC 3 cut(s) 176, 196, 199
MaeIII GTNAC 1 cut(s) 62
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 3 cut(s) 41, 125, 244
MhlI GDGCHC 1 cut(s) 239
Mly113I GGCGCC 1 cut(s) 87
MnlI CCTC 1 cut(s) 32
MseI TTAA 1 cut(s) 158
MslI CAYNNNNRTG 2 cut(s) 77, 179
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 196
NarI GGCGCC 1 cut(s) 87
NdeII GATC 1 cut(s) 99
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 62
PciSI GCTCTTC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 59
PfoI TCCNGGA 1 cut(s) 34
PkrI GCNGC 3 cut(s) 166, 186, 189
PluTI GGCGCC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 88
RsaI GTAC 2 cut(s) 12, 122
RsaNI GTAC 2 cut(s) 11, 121
RseI CAYNNNNRTG 2 cut(s) 77, 179
SacI GAGCTC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 3 cut(s) 165, 185, 188
Sau3AI GATC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 239
SetI ASST 5 cut(s) 24, 169, 216, 230, 239
SfoI GGCGCC 1 cut(s) 88
SgeI CNNG 8 cut(s) 47, 48, 66, 68, 91, 142, 157, 224
SmiMI CAYNNNNRTG 2 cut(s) 77, 179
SspDI GGCGCC 1 cut(s) 86
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 181
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 3 cut(s) 164, 184, 187
Tsp45I GTSAC 1 cut(s) 62
TspRI CASTG 1 cut(s) 186
Van91I CCANNNNNTGG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.