Rh2CG460200

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
62315787 .. 62319743
3957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG460200.1

Sequence Viewer

Length: 1461 bp
ATGAACAATCTCCACAACAGATCAAAGAAACCCAGTTTTGGAGCTCACTTCCAGAACAATCATAGCCAAGAAAAACAACCCACCATGGCAGAAACCAGTACCAGCAGCAGTTGCAATGGCTCTCCATTGACCCAAATAGCCCAAGACCACCTCTTCACAATCTTGCTACTCCTCCCTGTTGATTCTATTCTCAGCTTTGCCATGACTTGCAAGAAGTTTAGAGCTCTCACAGCTTCTGATACTCTGTGGGAGTACATATGCCAGAGGGACTGGGGCACCAAAGCAGTTGAGGCCATCAAGGCTTCAAATTCTAATCAGCAGTTTCCTTGGATGAGGATTTACAAGCAAGTTTCTGGGTTTGACTCTGTGTATTGCCATAGAGTGTGTGCTGATCCAGATGCTGAGTTGGTGTCTCCAACTCCCAGGGCCTCTCATTCCCTCAATTTTGTGTCTGATTGCTTGGTTTTGTTTGGTGGTGGCTGTGAGGGAGGACGCCATCTAGATGACACATGGGTGGCATACATGGGTAATGATTTTCAGAGATTGCTGAAGTGGCAGAGGATCAGTTCGGGCAGTCCAAGTGGAAGATTTGGGCATACATGTGCTGTAATTGATGATTTTCTTGTTCTATTTGGAGGTATAAATGACAATGGAAACCGTCAAAACGATACATGGGTGGGGCAAGTAGCATGCCATGATAGCCTTGGTATCACATTGTCCTGGAGGCTGCTTGTGGTGGGGGACAATGCACCTCCCCAGCGAGGAGCTCATGCGGCATGCTGCATTGAAGGTAGAAAGATGGTTATCCATGGAGGAATTGGGCGGTTTGGTGTGAGACTGAGTGACACATGGGTATTGGAACTCTCAGAAAACTTTCGAACTGGTACTTGGTATGAAATCGTTACTCAGCCATCTCCCCCAGCTCGCTCAGGTCACACGTTGACTTGCATTGGGGGAACCCGAACTGTTTTATTTGGAGGAAGAGGATTGGGATATGATGTGCTTCATGATCTTTGGCTCTTGGATATTTGTGAGGGTCATCCACAATGGTTACAAGTACTATACGAGTTACAAAATATTCCTGGAGGAGTTTCCCTTCCACGGGTTGGTCACTCGGCTACACTCATCTTAGGAGGTCGTTTGCTGATATGTGGAGGGGAAGACTCGTATAGACACCGGAAGAATGACTTCTGGGTTTTAGACATTACTGCAGTTCCCTCCATTACGGTGCAGCCAACTATGTTGAACTCTATGCATTTATTTGCAAAAATGTGGAAAAGATTGAAGACAAAGGGTCATATACCCAACTGCCGGTCATTTCATCGTGCCTGTGCAGATCAATCTAGGCGTTGCGTGTTTATGTTTGGCGGAATGGTGGATGGTTTACTTCAACCTGCTGACCCAGCTGGGCTGAGGTTTGATGGAGAGCTCCTCCTTGTGGAGCTTGTGCTTCAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

486

Amino Acids

53.93

Weight (kDa)

7.88

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 133 - 290 6.8e-24 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 137 - 291 3.6e-23 FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1 PF24981 184 - 275 4.4e-08 Attractin/LZTR1 beta-propeller
Kelch_HCF PF13854 184 - 460 2.2e-12 Host cell factor, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 238 - 403 1.2e-25 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 291 - 403 1.2e-14 FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1 PF24981 291 - 459 4.4e-08 Attractin/LZTR1 beta-propeller
Beta-prop_TYW4 PF13418 306 - 457 1.7e-08 tRNA wybutosine-synthesizing protein 4, beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 359 - 459 1.9e-12 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013494)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1402
AccB1I GGYRCC 1 cut(s) 275
AccB7I CCANNNNNTGG 1 cut(s) 1106
AciI CCGC 3 cut(s) 773, 823, 1368
AclWI GGATC 2 cut(s) 386, 569
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 569, 1436
AcyI GRCGYC 1 cut(s) 493
AfaI GTAC 4 cut(s) 100, 254, 886, 1059
AfiI CCNNNNNNNGG 7 cut(s) 38, 761, 1101, 1102, 1106, 1311, 1438
AflIII ACRYGT 2 cut(s) 599, 936
AgsI TTSAA 5 cut(s) 306, 788, 1246, 1285, 1391
AhdI GACNNNNNGTC 1 cut(s) 1293
AjnI CCWGG 3 cut(s) 422, 719, 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 871, 903
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 9 cut(s) 44, 195, 224, 233, 767, 923, 1406, 1429, 1444
AluI AGCT 9 cut(s) 44, 195, 224, 233, 767, 923, 1406, 1429, 1444
Alw21I GWGCWC 4 cut(s) 46, 226, 769, 1431
Alw26I GTCTC 2 cut(s) 417, 829
AlwI GGATC 2 cut(s) 386, 569
AlwNI CAGNNNCTG 2 cut(s) 236, 401
AoxI GGCC 2 cut(s) 291, 426
ApeKI GCWGC 4 cut(s) 105, 727, 780, 1231
ApoI RAATTY 1 cut(s) 307
Asp700I GAANNNNTTC 2 cut(s) 873, 1187
AspS9I GGNCC 1 cut(s) 426
AsuII TTCGAA 1 cut(s) 877
BaeGI GKGCMC 1 cut(s) 278
BaeI ACNNNNGTAYC 2 cut(s) 660, 693
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 4 cut(s) 46, 226, 769, 1431
BbsI GAAGAC 2 cut(s) 1167, 1292
Bbv12I GWGCWC 4 cut(s) 46, 226, 769, 1431
BbvCI CCTCAGC 1 cut(s) 1412
BbvI GCAGC 4 cut(s) 117, 714, 767, 1243
BccI CCATC 6 cut(s) 302, 504, 793, 919, 1373, 1415
BciT130I CCWGG 3 cut(s) 424, 721, 1083
BcoDI GTCTC 2 cut(s) 417, 829
BfaI CTAG 2 cut(s) 500, 1344
BfmI CTRYAG 1 cut(s) 1209
BfuAI ACCTGC 1 cut(s) 1402
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 5 cut(s) 106, 728, 774, 781, 1232
BlsI GCNGC 5 cut(s) 107, 729, 775, 782, 1233
BmcAI AGTACT 1 cut(s) 1059
Bme1390I CCNGG 3 cut(s) 424, 721, 1083
BmeRI GACNNNNNGTC 1 cut(s) 1293
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 2 cut(s) 277, 958
BmrFI CCNGG 3 cut(s) 424, 721, 1083
BmrI ACTGGG 2 cut(s) 27, 280
BmsI GCATC 1 cut(s) 388
BmuI ACTGGG 2 cut(s) 27, 280
BpiI GAAGAC 2 cut(s) 1167, 1292
BplI GAGNNNNNCTC 2 cut(s) 1416, 1448
BpmI CTGGAG 2 cut(s) 742, 1104
Bpu10I CCTNAGC 2 cut(s) 928, 1412
Bpu14I TTCGAA 1 cut(s) 877
BsaBI GATNNNNATC 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 493
BsaJI CCNNGG 7 cut(s) 84, 326, 422, 423, 703, 808, 1100
BsaWI WCCGGW 1 cut(s) 1176
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 761, 1101, 1102, 1106, 1311, 1438
Bse118I RCCGGY 1 cut(s) 1311
Bse1I ACTGG 4 cut(s) 33, 96, 275, 886
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 803
BseBI CCWGG 3 cut(s) 424, 721, 1083
BseDI CCNNGG 7 cut(s) 84, 326, 422, 423, 703, 808, 1100
BseGI GGATG 3 cut(s) 336, 1039, 1384
BseJI GATNNNNATC 1 cut(s) 803
BseLI CCNNNNNNNGG 7 cut(s) 38, 761, 1101, 1102, 1106, 1311, 1438
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 7 cut(s) 205, 393, 830, 879, 920, 942, 1403
BseNI ACTGG 4 cut(s) 33, 96, 275, 886
BseRI GAGGAG 4 cut(s) 161, 777, 1101, 1421
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 4 cut(s) 117, 714, 767, 1243
BseYI CCCAGC 4 cut(s) 756, 919, 1402, 1406
BsgI GTGCAG 2 cut(s) 1250, 1353
BshFI GGCC 2 cut(s) 293, 428
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 4 cut(s) 46, 226, 769, 1431
BsiSI CCGG 2 cut(s) 1177, 1312
BslFI GGGAC 2 cut(s) 281, 755
BslI CCNNNNNNNGG 7 cut(s) 38, 761, 1101, 1102, 1106, 1311, 1438
BsmAI GTCTC 2 cut(s) 417, 829
BsmFI GGGAC 2 cut(s) 281, 755
BsnI GGCC 2 cut(s) 293, 428
Bsp119I TTCGAA 1 cut(s) 877
Bsp1286I GDGCHC 5 cut(s) 46, 226, 278, 769, 1431
Bsp143I GATC 5 cut(s) 20, 391, 561, 1009, 1336
Bsp19I CCATGG 2 cut(s) 84, 808
BspACI CCGC 3 cut(s) 773, 823, 1368
BspANI GGCC 2 cut(s) 293, 428
BspCNI CTCAG 7 cut(s) 204, 394, 831, 878, 919, 941, 1404
BspHI TCATGA 1 cut(s) 1006
BspLI GGNNCC 2 cut(s) 277, 958
BspMAI CTGCAG 1 cut(s) 1213
BspMI ACCTGC 1 cut(s) 1402
BspPI GGATC 2 cut(s) 386, 569
BspT104I TTCGAA 1 cut(s) 877
BspT107I GGYRCC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 1311
BsrI ACTGG 4 cut(s) 33, 96, 275, 886
BssAI RCCGGY 1 cut(s) 1311
BssECI CCNNGG 7 cut(s) 84, 326, 422, 423, 703, 808, 1100
BssMI GATC 5 cut(s) 20, 391, 561, 1009, 1336
BssNI GRCGYC 1 cut(s) 493
BssT1I CCWWGG 4 cut(s) 84, 326, 703, 808
Bst2UI CCWGG 3 cut(s) 424, 721, 1083
Bst4CI ACNGT 3 cut(s) 659, 967, 1228
Bst6I CTCTTC 2 cut(s) 158, 976
BstACI GRCGYC 1 cut(s) 493
BstAPI GCANNNNNTGC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 3 cut(s) 691, 778, 925
BstDEI CTNAG 8 cut(s) 191, 402, 839, 865, 906, 928, 1129, 1412
BstDSI CCRYGG 3 cut(s) 84, 808, 1100
BstF5I GGATG 3 cut(s) 336, 1039, 1384
BstKTI GATC 5 cut(s) 23, 394, 564, 1012, 1339
BstMAI GTCTC 2 cut(s) 417, 829
BstMBI GATC 5 cut(s) 20, 391, 561, 1009, 1336
BstMWI GCNNNNNNNGC 8 cut(s) 111, 230, 290, 299, 553, 699, 773, 1403
BstNI CCWGG 3 cut(s) 424, 721, 1083
BstNSI RCATGY 3 cut(s) 603, 693, 780
BstSCI CCNGG 3 cut(s) 422, 719, 1081
BstSFI CTRYAG 1 cut(s) 1209
BstSLI GKGCMC 1 cut(s) 278
BstV1I GCAGC 4 cut(s) 117, 714, 767, 1243
BstV2I GAAGAC 2 cut(s) 1167, 1292
BsuRI GGCC 2 cut(s) 293, 428
BtgI CCRYGG 3 cut(s) 84, 808, 1100
BtsCI GGATG 3 cut(s) 336, 1039, 1384
BveI ACCTGC 1 cut(s) 1402
Cac8I GCNNGC 3 cut(s) 691, 778, 925
CaiI CAGNNNCTG 2 cut(s) 236, 401
CciI TCATGA 1 cut(s) 1006
Cfr10I RCCGGY 1 cut(s) 1311
Cfr13I GGNCC 1 cut(s) 426
CseI GACGC 1 cut(s) 501
Csp6I GTAC 4 cut(s) 99, 253, 885, 1058
CviQI GTAC 4 cut(s) 99, 253, 885, 1058
DdeI CTNAG 8 cut(s) 191, 402, 839, 865, 906, 928, 1129, 1412
DpnI GATC 5 cut(s) 22, 393, 563, 1011, 1338
DpnII GATC 5 cut(s) 20, 391, 561, 1009, 1336
DriI GACNNNNNGTC 1 cut(s) 1293
Eam1104I CTCTTC 2 cut(s) 158, 976
Eam1105I GACNNNNNGTC 1 cut(s) 1293
EarI CTCTTC 2 cut(s) 158, 976
EciI GGCGGA 1 cut(s) 1383
Ecl136II GAGCTC 4 cut(s) 44, 224, 767, 1429
Eco130I CCWWGG 4 cut(s) 84, 326, 703, 808
Eco24I GRGCYC 4 cut(s) 46, 226, 769, 1431
Eco53kI GAGCTC 4 cut(s) 44, 224, 767, 1429
Eco57I CTGAAG 2 cut(s) 569, 1436
EcoICRI GAGCTC 4 cut(s) 44, 224, 767, 1429
EcoO109I RGGNCCY 1 cut(s) 426
EcoRII CCWGG 3 cut(s) 422, 719, 1081
EcoT14I CCWWGG 4 cut(s) 84, 326, 703, 808
EcoT22I ATGCAT 1 cut(s) 1257
EcoT38I GRGCYC 4 cut(s) 46, 226, 769, 1431
ErhI CCWWGG 4 cut(s) 84, 326, 703, 808
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FaqI GGGAC 2 cut(s) 281, 755
FauNDI CATATG 1 cut(s) 257
Fnu4HI GCNGC 5 cut(s) 106, 728, 774, 781, 1232
FokI GGATG 3 cut(s) 343, 1026, 1391
FriOI GRGCYC 4 cut(s) 46, 226, 769, 1431
Fsp4HI GCNGC 5 cut(s) 106, 728, 774, 781, 1232
FspBI CTAG 2 cut(s) 500, 1344
GluI GCNGC 5 cut(s) 106, 728, 774, 781, 1232
GsaI CCCAGC 4 cut(s) 760, 923, 1406, 1410
GsuI CTGGAG 2 cut(s) 742, 1104
HaeIII GGCC 2 cut(s) 293, 428
HapII CCGG 2 cut(s) 1177, 1312
HgaI GACGC 1 cut(s) 501
Hin1I GRCGYC 1 cut(s) 493
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HinfI GANTC 3 cut(s) 182, 362, 1163
HpaII CCGG 2 cut(s) 1177, 1312
Hpy166II GTNNAC 2 cut(s) 942, 1385
Hpy188I TCNGA 4 cut(s) 238, 454, 540, 868
Hpy188III TCNNGA 4 cut(s) 52, 395, 500, 1007
Hpy8I GTNNAC 2 cut(s) 942, 1385
HpyAV CCTTC 2 cut(s) 782, 1106
HpyCH4III ACNGT 3 cut(s) 659, 967, 1228
HpyCH4IV ACGT 1 cut(s) 938
HpyF10VI GCNNNNNNNGC 8 cut(s) 111, 230, 290, 299, 553, 699, 773, 1403
HpyF3I CTNAG 8 cut(s) 191, 402, 839, 865, 906, 928, 1129, 1412
HpySE526I ACGT 1 cut(s) 938
Hsp92I GRCGYC 1 cut(s) 493
Kzo9I GATC 5 cut(s) 20, 391, 561, 1009, 1336
LmnI GCTCC 4 cut(s) 41, 764, 1434, 1441
Lsp1109I GCAGC 4 cut(s) 117, 714, 767, 1243
LweI GCATC 1 cut(s) 388
MaeI CTAG 2 cut(s) 500, 1344
MaeII ACGT 1 cut(s) 938
MaeIII GTNAC 6 cut(s) 842, 901, 932, 1050, 1068, 1109
MalI GATC 5 cut(s) 22, 393, 563, 1011, 1338
MboI GATC 5 cut(s) 20, 391, 561, 1009, 1336
MboII GAAGA 6 cut(s) 145, 597, 993, 1172, 1192, 1297
MhlI GDGCHC 5 cut(s) 46, 226, 278, 769, 1431
MluCI AATT 4 cut(s) 307, 442, 609, 816
MlyI GAGTC 2 cut(s) 356, 1157
MmeI TCCRAC 1 cut(s) 440
Mph1103I ATGCAT 1 cut(s) 1257
MroXI GAANNNNTTC 2 cut(s) 873, 1187
MslI CAYNNNNRTG 4 cut(s) 501, 512, 600, 1226
MspA1I CMGCKG 1 cut(s) 1406
MspI CCGG 2 cut(s) 1177, 1312
MspR9I CCNGG 3 cut(s) 424, 721, 1083
MvaI CCWGG 3 cut(s) 424, 721, 1083
MwoI GCNNNNNNNGC 8 cut(s) 111, 230, 290, 299, 553, 699, 773, 1403
NcoI CCATGG 2 cut(s) 84, 808
NdeI CATATG 1 cut(s) 257
NdeII GATC 5 cut(s) 20, 391, 561, 1009, 1336
NlaIV GGNNCC 2 cut(s) 277, 958
NmeAIII GCCGAG 1 cut(s) 1094
NmuCI GTSAC 3 cut(s) 842, 932, 1109
NsiI ATGCAT 1 cut(s) 1257
NspI RCATGY 3 cut(s) 603, 693, 780
NspV TTCGAA 1 cut(s) 877
OliI CACNNNNGTG 1 cut(s) 512
PaeI GCATGC 2 cut(s) 693, 780
PagI TCATGA 1 cut(s) 1006
PasI CCCWGGG 1 cut(s) 423
PciI ACATGT 1 cut(s) 599
PdmI GAANNNNTTC 2 cut(s) 873, 1187
PfeI GAWTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 1106
PfoI TCCNGGA 2 cut(s) 719, 1081
PkrI GCNGC 5 cut(s) 107, 729, 775, 782, 1233
PleI GAGTC 2 cut(s) 356, 1157
PpsI GAGTC 2 cut(s) 356, 1157
PscI ACATGT 1 cut(s) 599
Psp124BI GAGCTC 4 cut(s) 46, 226, 769, 1431
Psp6I CCWGG 3 cut(s) 422, 719, 1081
PspFI CCCAGC 4 cut(s) 756, 919, 1402, 1406
PspGI CCWGG 3 cut(s) 422, 719, 1081
PspN4I GGNNCC 2 cut(s) 277, 958
PspPI GGNCC 1 cut(s) 426
PstI CTGCAG 1 cut(s) 1213
PstNI CAGNNNCTG 2 cut(s) 236, 401
PvuII CAGCTG 1 cut(s) 1406
RsaI GTAC 4 cut(s) 100, 254, 886, 1059
RsaNI GTAC 4 cut(s) 99, 253, 885, 1058
RseI CAYNNNNRTG 4 cut(s) 501, 512, 600, 1226
SacI GAGCTC 4 cut(s) 46, 226, 769, 1431
SatI GCNGC 5 cut(s) 106, 728, 774, 781, 1232
Sau3AI GATC 5 cut(s) 20, 391, 561, 1009, 1336
Sau96I GGNCC 1 cut(s) 426
ScaI AGTACT 1 cut(s) 1059
SchI GAGTC 2 cut(s) 356, 1157
ScrFI CCNGG 3 cut(s) 424, 721, 1083
SduI GDGCHC 5 cut(s) 46, 226, 278, 769, 1431
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 1209
SfuI TTCGAA 1 cut(s) 877
SmiMI CAYNNNNRTG 4 cut(s) 501, 512, 600, 1226
SphI GCATGC 2 cut(s) 693, 780
Sse9I AATT 4 cut(s) 307, 442, 609, 816
SsiI CCGC 3 cut(s) 773, 823, 1368
SspI AATATT 1 cut(s) 1078
SspMI CTAG 2 cut(s) 500, 1344
SstI GAGCTC 4 cut(s) 46, 226, 769, 1431
StyD4I CCNGG 3 cut(s) 422, 719, 1081
StyI CCWWGG 4 cut(s) 84, 326, 703, 808
TaaI ACNGT 3 cut(s) 659, 967, 1228
TaiI ACGT 1 cut(s) 941
TaqI TCGA 1 cut(s) 877
TasI AATT 4 cut(s) 307, 442, 609, 816
TatI WGTACW 2 cut(s) 252, 1057
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 1 cut(s) 182
TseFI GTSAC 3 cut(s) 842, 932, 1109
TseI GCWGC 4 cut(s) 105, 727, 780, 1231
Tsp45I GTSAC 3 cut(s) 842, 932, 1109
TspDTI ATGAA 4 cut(s) 17, 909, 995, 1310
Van91I CCANNNNNTGG 1 cut(s) 1106
XapI RAATTY 1 cut(s) 307
XbaI TCTAGA 1 cut(s) 499
XceI RCATGY 3 cut(s) 603, 693, 780
XcmI CCANNNNNNNNNTGG 2 cut(s) 701, 815
XmnI GAANNNNTTC 2 cut(s) 873, 1187
XspI CTAG 2 cut(s) 500, 1344
ZrmI AGTACT 1 cut(s) 1059
Zsp2I ATGCAT 1 cut(s) 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.