MD17G1147400.v1.1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013494
Physical Location & Seq
Forward (+)
13350277 .. 13353639
3363 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1147400.v1.1.491

Sequence Viewer

Length: 1404 bp
ATGGCAGAAACCAGCAGCACTAGCAGAAGCAGCAGCAGCAGCTTCGGTTACTCCTTCAATGGCTCACCAATTTCCAACATAGCCCAAGACCACCTCCTCACAATCCTGCTGCTCCTTCCTGTGGATTCAATTCTTTGCTTTGCCATGACCTGCAAAAAGTTCAGAGCTTTGGCAGCATCTGACAGTCTGTGGGAGTCCATATGCAGGAGGGACTGGGGACCCAAAACAGTGGAGGCCCTCAAAGCTTCAAACTTTGGCCATCAGCAGCTGCCATGGATGAGGCTCTACAAGCAAGTATCTAGGGTTGACTCTGTGTATTGCCATAAATTTTCTGACCCGGATGGGGAATTGGGGTTCCCCAGTCCCAGGGCTTCTCATTCCCTCAATTTTGTGTCTGGTTGCTTGGTGTTGTTTGGTGGTGGATGTGAGGGAGGACGCCATCTAGACGACACATGGGTGGCATACATTGGTAATGATTTTCGGAGAATGTTGAAGTGGCAGAAGTTAAATTCTGGCATTCCAAGTGGTAGGTTTGGGCATTCTTCTGTTGTAATTGATGATTTTCTTGTTATGTTTGGAGGAATAAACGACAATGGGGGCCGTCACAATGATACATGGGTGGGGCAAGTAGCATGCCATGAGAGTCTTGGTGTCACACTCTCATGGAAGCTGCTTGTTGTGGGATCCGACGCACCTTCCCAGCGTGGGGCTCATGCTGCATGTTGCATTGACAGCAGAAAGATGGTTATCCATGGAGGAATTGGGCTTTACGGTGTGAGATTGTGTGACACATGGGTGTTGGAACTCTCAGAAAATTTTCGGTTTGGAACTTGGTATGAAATCAGGACTCATCCATGTCCCCCAGCTCGTTCGGGACACACACTGACCTGCATCGGAGGAGCACGAACGGTTTTATTTGGTGGGAGAGGATTAGGTTACGACGTGCTTAATGATGTCTGGTTCTTGGACATTTGTGAAGGTAATCCGAAATGGGTACAGGTACACTATGAGCTACAAAATATTCCAGGAGGAGTCTCTCTTCCGCGAGTTGGTCACTCAGCCACGCTCATGTTAGGCGGCCATCTGCTGATCTGTGGGGGAGAGGATTCGTACAGACATCGTAAAAATGACTTCTGGGTTTTAGACATAAATGCAGTTCCATCCATTACAATGCAGCAGCCAACTCCACTGAACTCTATGCAGTTATTGGCAAAAATGTGGAAGAGGTTCAAGGCAAATGGTTATGAGCCCAAATGCCGGTCCTTCCATCGAGCCTGCTCAGATAACTCGGGGCGGTACTTGTTTGTATTTGGCGGAATGGTGGATGGGTTGCTTCAGCCGGCTGACCCTTCCGGGCTGAGGTTTGACGGCGAGCTCCTGCTTGTGGAGCTTGTGCTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_3 Kelch_4 Kelch_5

Protein Analysis

468

Amino Acids

51.64

Weight (kDa)

8.12

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 32 - 70 1.9e-06 F-box-like
Kelch_KLHDC2_KLHL20_DRC7 PF24681 116 - 207 1.2e-12 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 117 - 272 5.3e-24 FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1 PF24981 165 - 253 4.7e-08 Attractin/LZTR1 beta-propeller
Kelch_HCF PF13854 166 - 441 2.6e-12 Host cell factor, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 219 - 384 1.3e-26 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 250 - 441 6.7e-08 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 277 - 384 4.3e-15 FBX42, beta-propeller domain
Beta-prop_TYW4 PF13418 287 - 384 1e-08 tRNA wybutosine-synthesizing protein 4, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51550
fragaria_vesca FvH4_6g37110
malus_domestica MD09G1161500.v1.1 MD17G1147400.v1.1
prunus_persica Prupe.3G020600_v2.0.a1
pyrus_communis pycom09g08000 pycom09g08050 pycom17g14000
rosa_chinensis RchiOBHm_Chr2g0149671
rosa_laevigata RLG00000020436
rosa_multiflora Rmu_sc0014307.1_g000005
rosa_roxburghii Rroxscaffold_2G00097810
rosa_rugosa Rorug02G0414300
rosa_samantha Rh2AG474500 Rh2BG486200 Rh2CG460200 Rh2DG495500
rosa_wichuraiana Rw2G038690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 158, 896
AccII CGCG 1 cut(s) 1045
AciI CCGC 4 cut(s) 1043, 1077, 1294, 1314
AclWI GGATC 2 cut(s) 678, 691
AcoI YGGCCR 2 cut(s) 256, 1078
AcsI RAATTY 3 cut(s) 326, 508, 814
AcuI CTGAAG 1 cut(s) 1319
AcyI GRCGYC 1 cut(s) 436
AfaI GTAC 4 cut(s) 996, 1002, 1112, 1298
AgsI TTSAA 5 cut(s) 58, 129, 249, 493, 1231
AjiI CACGTC 1 cut(s) 943
AjnI CCWGG 2 cut(s) 365, 1024
AleI CACNNNNGTG 2 cut(s) 455, 794
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
AluBI AGCT 9 cut(s) 42, 167, 245, 268, 670, 866, 1012, 1375, 1390
AluI AGCT 9 cut(s) 42, 167, 245, 268, 670, 866, 1012, 1375, 1390
Alw21I GWGCWC 2 cut(s) 904, 1377
Alw26I GTCTC 1 cut(s) 1039
AlwI GGATC 2 cut(s) 678, 691
AlwNI CAGNNNCTG 2 cut(s) 179, 268
Ama87I CYCGRG 1 cut(s) 1288
AoxI GGCC 4 cut(s) 234, 256, 598, 1078
ApoI RAATTY 3 cut(s) 326, 508, 814
Asp700I GAANNNNTTC 2 cut(s) 816, 1226
AspS9I GGNCC 4 cut(s) 218, 235, 598, 1260
AsuC2I CCSGG 2 cut(s) 338, 1354
AsuHPI GGTGA 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 1288
AvaII GGWCC 2 cut(s) 218, 1260
BaeI ACNNNNGTAYC 2 cut(s) 603, 636
BalI TGGCCA 1 cut(s) 258
BamHI GGATCC 1 cut(s) 683
BanII GRGCYC 3 cut(s) 712, 1251, 1377
Bbv12I GWGCWC 2 cut(s) 904, 1377
BbvCI CCTCAGC 2 cut(s) 1358, 1397
BccI CCATC 8 cut(s) 267, 335, 447, 736, 1089, 1168, 1275, 1319
BceAI ACGGC 2 cut(s) 585, 1384
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 2 cut(s) 367, 1026
BcnI CCSGG 2 cut(s) 338, 1354
BcoDI GTCTC 1 cut(s) 1039
BfaI CTAG 3 cut(s) 21, 300, 443
BfuAI ACCTGC 2 cut(s) 158, 896
Bme1390I CCNGG 4 cut(s) 338, 367, 1026, 1354
Bme18I GGWCC 2 cut(s) 218, 1260
BmeT110I CYCGRG 1 cut(s) 1288
BmgBI CACGTC 1 cut(s) 943
BmgT120I GGNCC 4 cut(s) 218, 235, 598, 1260
BmiI GGNNCC 5 cut(s) 219, 220, 356, 599, 685
BmrFI CCNGG 4 cut(s) 338, 367, 1026, 1354
BmrI ACTGGG 2 cut(s) 223, 354
BmsI GCATC 2 cut(s) 185, 900
BmuI ACTGGG 2 cut(s) 223, 354
Bpu10I CCTNAGC 2 cut(s) 1358, 1397
BpuMI CCSGG 2 cut(s) 338, 1354
BsaBI GATNNNNATC 1 cut(s) 746
BsaHI GRCGYC 1 cut(s) 436
BsaJI CCNNGG 4 cut(s) 272, 365, 366, 751
Bse118I RCCGGY 2 cut(s) 1257, 1339
Bse1I ACTGG 2 cut(s) 218, 360
Bse8I GATNNNNATC 1 cut(s) 746
BseBI CCWGG 2 cut(s) 367, 1026
BseDI CCNNGG 4 cut(s) 272, 365, 366, 751
BseGI GGATG 6 cut(s) 282, 346, 428, 850, 1160, 1330
BseJI GATNNNNATC 1 cut(s) 746
BseMII CTCAG 5 cut(s) 822, 1071, 1293, 1349, 1388
BseNI ACTGG 2 cut(s) 218, 360
BseRI GAGGAG 3 cut(s) 86, 912, 1044
BseYI CCCAGC 2 cut(s) 699, 862
Bsh1236I CGCG 1 cut(s) 1045
BshFI GGCC 4 cut(s) 236, 258, 600, 1080
BsiHKAI GWGCWC 2 cut(s) 904, 1377
BsiHKCI CYCGRG 1 cut(s) 1288
BsiSI CCGG 4 cut(s) 338, 1258, 1340, 1353
BslFI GGGAC 5 cut(s) 224, 231, 348, 843, 888
BsmAI GTCTC 1 cut(s) 1039
BsmFI GGGAC 5 cut(s) 224, 231, 348, 843, 888
BsmI GAATGC 2 cut(s) 516, 538
BsnI GGCC 4 cut(s) 236, 258, 600, 1080
BsoBI CYCGRG 1 cut(s) 1288
Bsp1286I GDGCHC 4 cut(s) 712, 904, 1251, 1377
Bsp143I GATC 2 cut(s) 683, 1089
Bsp19I CCATGG 2 cut(s) 272, 751
BspACI CCGC 4 cut(s) 1043, 1077, 1294, 1314
BspANI GGCC 4 cut(s) 236, 258, 600, 1080
BspCNI CTCAG 5 cut(s) 821, 1070, 1292, 1350, 1389
BspFNI CGCG 1 cut(s) 1045
BspLI GGNNCC 5 cut(s) 219, 220, 356, 599, 685
BspMI ACCTGC 2 cut(s) 158, 896
BspPI GGATC 2 cut(s) 678, 691
BsrFI RCCGGY 2 cut(s) 1257, 1339
BsrI ACTGG 2 cut(s) 218, 360
BssAI RCCGGY 2 cut(s) 1257, 1339
BssECI CCNNGG 4 cut(s) 272, 365, 366, 751
BssMI GATC 2 cut(s) 683, 1089
BssNI GRCGYC 1 cut(s) 436
BssT1I CCWWGG 2 cut(s) 272, 751
Bst2UI CCWGG 2 cut(s) 367, 1026
Bst4CI ACNGT 4 cut(s) 185, 229, 773, 910
Bst6I CTCTTC 2 cut(s) 1044, 1217
BstACI GRCGYC 1 cut(s) 436
BstC8I GCNNGC 4 cut(s) 634, 1276, 1341, 1373
BstDEI CTNAG 5 cut(s) 808, 1057, 1279, 1358, 1397
BstDSI CCRYGG 2 cut(s) 272, 751
BstF5I GGATG 6 cut(s) 282, 346, 428, 850, 1160, 1330
BstFNI CGCG 1 cut(s) 1045
BstKTI GATC 2 cut(s) 686, 1092
BstMAI GTCTC 1 cut(s) 1039
BstMBI GATC 2 cut(s) 683, 1089
BstNI CCWGG 2 cut(s) 367, 1026
BstNSI RCATGY 2 cut(s) 636, 723
BstSCI CCNGG 4 cut(s) 336, 365, 1024, 1352
BstUI CGCG 1 cut(s) 1045
BstX2I RGATCY 1 cut(s) 683
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 1 cut(s) 683
BsuRI GGCC 4 cut(s) 236, 258, 600, 1080
BtgI CCRYGG 2 cut(s) 272, 751
BtrI CACGTC 1 cut(s) 943
BtsCI GGATG 6 cut(s) 282, 346, 428, 850, 1160, 1330
BtsIMutI CAGTG 3 cut(s) 234, 881, 1187
BveI ACCTGC 2 cut(s) 158, 896
Cac8I GCNNGC 4 cut(s) 634, 1276, 1341, 1373
CaiI CAGNNNCTG 2 cut(s) 179, 268
Cfr10I RCCGGY 2 cut(s) 1257, 1339
Cfr13I GGNCC 4 cut(s) 218, 235, 598, 1260
CseI GACGC 2 cut(s) 444, 698
Csp6I GTAC 4 cut(s) 995, 1001, 1111, 1297
CviQI GTAC 4 cut(s) 995, 1001, 1111, 1297
DdeI CTNAG 5 cut(s) 808, 1057, 1279, 1358, 1397
DpnI GATC 2 cut(s) 685, 1091
DpnII GATC 2 cut(s) 683, 1089
EaeI YGGCCR 2 cut(s) 256, 1078
Eam1104I CTCTTC 2 cut(s) 1044, 1217
EarI CTCTTC 2 cut(s) 1044, 1217
EciI GGCGGA 1 cut(s) 1329
Ecl136II GAGCTC 1 cut(s) 1375
Eco130I CCWWGG 2 cut(s) 272, 751
Eco24I GRGCYC 3 cut(s) 712, 1251, 1377
Eco47I GGWCC 2 cut(s) 218, 1260
Eco53kI GAGCTC 1 cut(s) 1375
Eco57I CTGAAG 1 cut(s) 1319
Eco88I CYCGRG 1 cut(s) 1288
EcoICRI GAGCTC 1 cut(s) 1375
EcoO109I RGGNCCY 2 cut(s) 218, 235
EcoRII CCWGG 2 cut(s) 365, 1024
EcoT14I CCWWGG 2 cut(s) 272, 751
EcoT38I GRGCYC 3 cut(s) 712, 1251, 1377
ErhI CCWWGG 2 cut(s) 272, 751
FaqI GGGAC 5 cut(s) 224, 231, 348, 843, 888
FauNDI CATATG 1 cut(s) 200
FokI GGATG 6 cut(s) 289, 353, 435, 837, 1147, 1337
FriOI GRGCYC 3 cut(s) 712, 1251, 1377
FspBI CTAG 3 cut(s) 21, 300, 443
GsaI CCCAGC 2 cut(s) 703, 866
HaeIII GGCC 4 cut(s) 236, 258, 600, 1080
HapII CCGG 4 cut(s) 338, 1258, 1340, 1353
HgaI GACGC 2 cut(s) 444, 698
Hin1I GRCGYC 1 cut(s) 436
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 7 cut(s) 125, 194, 308, 643, 847, 1032, 1106
HpaII CCGG 4 cut(s) 338, 1258, 1340, 1353
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 2 cut(s) 307, 1003
Hpy188I TCNGA 9 cut(s) 164, 181, 334, 483, 688, 811, 896, 987, 1282
Hpy188III TCNNGA 3 cut(s) 443, 844, 873
Hpy8I GTNNAC 2 cut(s) 307, 1003
Hpy99I CGWCG 2 cut(s) 692, 944
HpyAV CCTTC 6 cut(s) 64, 125, 705, 971, 1273, 1359
HpyCH4III ACNGT 4 cut(s) 185, 229, 773, 910
HpyCH4IV ACGT 1 cut(s) 942
HpyCH4V TGCA 8 cut(s) 153, 204, 719, 726, 891, 1154, 1174, 1201
HpyF3I CTNAG 5 cut(s) 808, 1057, 1279, 1358, 1397
HpySE526I ACGT 1 cut(s) 942
Hsp92I GRCGYC 1 cut(s) 436
KflI GGGWCCC 1 cut(s) 218
KroI GCCGGC 1 cut(s) 1339
KroNI GCCGGC 1 cut(s) 1341
Kzo9I GATC 2 cut(s) 683, 1089
LmnI GCTCC 4 cut(s) 117, 899, 1380, 1387
LweI GCATC 2 cut(s) 185, 900
MaeI CTAG 3 cut(s) 21, 300, 443
MaeII ACGT 1 cut(s) 942
MaeIII GTNAC 6 cut(s) 47, 602, 652, 785, 935, 1052
MalI GATC 2 cut(s) 685, 1091
MboI GATC 2 cut(s) 683, 1089
MboII GAAGA 3 cut(s) 534, 1031, 1234
MflI RGATCY 1 cut(s) 683
MhlI GDGCHC 4 cut(s) 712, 904, 1251, 1377
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 9 cut(s) 69, 129, 326, 347, 385, 508, 552, 759, 814
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 5 cut(s) 203, 302, 652, 841, 1041
MmeI TCCRAC 3 cut(s) 99, 711, 780
Mox20I TGGCCA 1 cut(s) 258
MroNI GCCGGC 1 cut(s) 1339
MroXI GAANNNNTTC 2 cut(s) 816, 1226
MscI TGGCCA 1 cut(s) 258
MseI TTAA 2 cut(s) 506, 948
MslI CAYNNNNRTG 5 cut(s) 455, 661, 794, 1067, 1169
Msp20I TGGCCA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 4 cut(s) 338, 1258, 1340, 1353
MspR9I CCNGG 4 cut(s) 338, 367, 1026, 1354
Mva1269I GAATGC 2 cut(s) 516, 538
MvaI CCWGG 2 cut(s) 367, 1026
MvnI CGCG 1 cut(s) 1045
NaeI GCCGGC 1 cut(s) 1341
NciI CCSGG 2 cut(s) 338, 1354
NcoI CCATGG 2 cut(s) 272, 751
NdeI CATATG 1 cut(s) 200
NdeII GATC 2 cut(s) 683, 1089
NgoMIV GCCGGC 1 cut(s) 1339
NlaIV GGNNCC 5 cut(s) 219, 220, 356, 599, 685
NmuCI GTSAC 4 cut(s) 602, 652, 785, 1052
NspI RCATGY 2 cut(s) 636, 723
OliI CACNNNNGTG 2 cut(s) 455, 794
PaeI GCATGC 1 cut(s) 636
PasI CCCWGGG 1 cut(s) 366
PctI GAATGC 2 cut(s) 516, 538
PdiI GCCGGC 1 cut(s) 1341
PdmI GAANNNNTTC 2 cut(s) 816, 1226
PfeI GAWTC 2 cut(s) 125, 1106
PfoI TCCNGGA 1 cut(s) 1024
PleI GAGTC 5 cut(s) 202, 302, 651, 841, 1040
PpsI GAGTC 5 cut(s) 202, 302, 651, 841, 1040
PpuMI RGGWCCY 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 1377
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 365, 1024
PspFI CCCAGC 2 cut(s) 699, 862
PspGI CCWGG 2 cut(s) 365, 1024
PspN4I GGNNCC 5 cut(s) 219, 220, 356, 599, 685
PspPI GGNCC 4 cut(s) 218, 235, 598, 1260
PspPPI RGGWCCY 1 cut(s) 218
PstNI CAGNNNCTG 2 cut(s) 179, 268
PsuI RGATCY 1 cut(s) 683
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 4 cut(s) 996, 1002, 1112, 1298
RsaNI GTAC 4 cut(s) 995, 1001, 1111, 1297
RseI CAYNNNNRTG 5 cut(s) 455, 661, 794, 1067, 1169
SacI GAGCTC 1 cut(s) 1377
SaqAI TTAA 2 cut(s) 506, 948
Sau3AI GATC 2 cut(s) 683, 1089
Sau96I GGNCC 4 cut(s) 218, 235, 598, 1260
SchI GAGTC 5 cut(s) 203, 302, 652, 841, 1041
ScrFI CCNGG 4 cut(s) 338, 367, 1026, 1354
SduI GDGCHC 4 cut(s) 712, 904, 1251, 1377
SfaNI GCATC 2 cut(s) 185, 900
SinI GGWCC 2 cut(s) 218, 1260
SmiMI CAYNNNNRTG 5 cut(s) 455, 661, 794, 1067, 1169
SphI GCATGC 1 cut(s) 636
Sse9I AATT 9 cut(s) 69, 129, 326, 347, 385, 508, 552, 759, 814
SsiI CCGC 4 cut(s) 1043, 1077, 1294, 1314
SspI AATATT 1 cut(s) 1021
SspMI CTAG 3 cut(s) 21, 300, 443
SstI GAGCTC 1 cut(s) 1377
StyD4I CCNGG 4 cut(s) 336, 365, 1024, 1352
StyI CCWWGG 2 cut(s) 272, 751
TaaI ACNGT 4 cut(s) 185, 229, 773, 910
TaiI ACGT 1 cut(s) 945
TaqI TCGA 1 cut(s) 1270
TasI AATT 9 cut(s) 69, 129, 326, 347, 385, 508, 552, 759, 814
TauI GCSGC 1 cut(s) 1080
TfiI GAWTC 2 cut(s) 125, 1106
Tru1I TTAA 2 cut(s) 506, 948
Tru9I TTAA 2 cut(s) 506, 948
TscAI CASTG 3 cut(s) 234, 888, 1194
TseFI GTSAC 4 cut(s) 602, 652, 785, 1052
Tsp45I GTSAC 4 cut(s) 602, 652, 785, 1052
TspDTI ATGAA 1 cut(s) 852
TspRI CASTG 3 cut(s) 234, 888, 1194
VpaK11BI GGWCC 2 cut(s) 218, 1260
XapI RAATTY 3 cut(s) 326, 508, 814
XbaI TCTAGA 1 cut(s) 442
XceI RCATGY 2 cut(s) 636, 723
XcmI CCANNNNNNNNNTGG 2 cut(s) 644, 758
XmnI GAANNNNTTC 2 cut(s) 816, 1226
XspI CTAG 3 cut(s) 21, 300, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.