Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Reverse (-)

19141823 .. 19144320

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGTGTGGATTTGAGGCAAGTGGTGGCTGGAATACTCACCATTACCATGTTTGTGATGCTTGGACAAATGCTTCATAGAGATTACTTTGATGCTGTTCAGGAGAAAGTTCAAGGAGATGCACATGATATTGAATTCCATGGATCAAAAGTAGCTGTTGAAGATGGACTTGTTAGAGCCTTTGAGGCTGGGACTAAAGGGCCTTGGATGGAAGATAGTCATGAACTCAAACCTTGTTGGTCAATTTCTCAATCTGATGAAGCGGTATCGTCAAAGGGTTACGTTACATTCTCCTTAACAAATGGTCCTGAATACCATGTCTCTCAGATTACTGATGCCGTGATGGTGGCGAAGCATCTTGGAGCAACTCTTGTGCTTCCTGACATTAGAGGAAGCAAACCTGGTGATGAAATGAAATTTGAAGATATCTATGATGTGGATAAACTCATTAAAACCTTGGAAAGTGTCGTCAAAGTTGTAAGAAAATTGCCGAGCCACGTATCTCTAAGAGATATTGCCATTGTCAAAGTTCCTACCCGAGTTGCAGAAGATTACATCAAGGAACATATTGATCCCATCTTCAAATCAAAAGGGAACATAAGGGTTACAACCTATTTCCCTTCTGTGAATTTGAGGAAATCTTCGCAGGGTGCTGAAACCGACCCTGTCTCTTGTTTGGCAATGTTTGGTTCCTTGGAATTGCAACCTGCAGTGAATGAATTGGTTGAGTCGATGATTCAGCGGTTGAAGACACATAGCAAGAAATCCGGTGGCCGTTTCATAGCCATAGACTTGAGGGTTGAGATACTTGAAAAGAAAAACTGCCATGAAACAGGTGCAGTGGGATCCAAAACATGTTACAACGCACAAGAGATTGCATTGTTCTTGAGGAAGCTTGGATTTGACAGCGATACAACTATATATCTGACTCAGCCAAGATGGGAGAGCAGCCTCAATATTCTTAAGGACATTTTCCCAAAAACATATACTAAGGAGGCGATAATGCCGTCAGATAAGAAAACGAAGTACCTTGAATTAGAGAATTCTGAATATGAAAATGTTATTGACTTCTACATAAGTTCAAGGAGTGATGTATTTGTACCAGCCATTCCCGGTCTGTTTTACGCCAATACAGTTGGAAAAAGGATAGCTTTAGGCAAGCCTCAAGTTCTCGTTCCAGCCGAGATCTCAGGGACATCCGGTCTTCCCGCTAATTACATATCTCCCTATATATCAAAGAAGAACCACTTGGCGTATTCATGCTTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

423

Amino Acids

47.14

Weight (kDa)

6.44

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	108 - 382	4.4e-29	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	715
AciI	CCGC	3 cut(s)	263, 742, 1209
AclWI	GGATC	4 cut(s)	151, 566, 840, 853
AcoI	YGGCCR	1 cut(s)	772
AcsI	RAATTY	4 cut(s)	134, 416, 628, 1042
AfaI	GTAC	2 cut(s)	1028, 1101
AflII	CTTAAG	1 cut(s)	962
AflIII	ACRYGT	1 cut(s)	854
AgsI	TTSAA	9 cut(s)	113, 134, 161, 422, 583, 748, 812, 1034, 1083
AhdI	GACNNNNNGTC	1 cut(s)	1200
AjnI	CCWGG	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	2 cut(s)	1232, 1264
AluBI	AGCT	3 cut(s)	155, 895, 1151
AluI	AGCT	3 cut(s)	155, 895, 1151
Alw26I	GTCTC	2 cut(s)	325, 673
AlwI	GGATC	4 cut(s)	151, 566, 840, 853
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	2 cut(s)	200, 772
ApeKI	GCWGC	1 cut(s)	948
ApoI	RAATTY	4 cut(s)	134, 416, 628, 1042
AspS9I	GGNCC	2 cut(s)	200, 305
AsuC2I	CCSGG	1 cut(s)	1113
AsuHPI	GGTGA	2 cut(s)	31, 416
AvaI	CYCGRG	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	845
BbsI	GAAGAC	2 cut(s)	755, 1196
BbvI	GCAGC	1 cut(s)	960
BccI	CCATC	5 cut(s)	158, 202, 337, 584, 933
BceAI	ACGGC	3 cut(s)	323, 759, 991
BciT130I	CCWGG	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	1113
BcoDI	GTCTC	2 cut(s)	325, 673
BfmI	CTRYAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	962
BfuAI	ACCTGC	1 cut(s)	715
BglI	GCCNNNNNGGC	1 cut(s)	185
BglII	AGATCT	1 cut(s)	1185
BisI	GCNGC	1 cut(s)	949
BlsI	GCNGC	1 cut(s)	950
Bme1390I	CCNGG	2 cut(s)	402, 1113
Bme18I	GGWCC	1 cut(s)	305
BmeRI	GACNNNNNGTC	1 cut(s)	1200
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	2 cut(s)	200, 305
BmiI	GGNNCC	2 cut(s)	691, 847
BmrFI	CCNGG	2 cut(s)	402, 1113
BmsI	GCATC	5 cut(s)	48, 82, 109, 325, 364
BpiI	GAAGAC	2 cut(s)	755, 1196
BpuEI	CTTGAG	3 cut(s)	814, 907, 1149
BpuMI	CCSGG	1 cut(s)	1113
BsaAI	YACGTR	1 cut(s)	499
BsaJI	CCNNGG	4 cut(s)	139, 203, 456, 693
BsaWI	WCCGGW	2 cut(s)	767, 1199
Bse3DI	GCAATG	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	4 cut(s)	139, 203, 456, 693
BseGI	GGATG	2 cut(s)	213, 1196
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	3 cut(s)	338, 944, 1203
BseXI	GCAGC	1 cut(s)	960
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	858
BshFI	GGCC	2 cut(s)	202, 774
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	768, 1113, 1200
BslFI	GGGAC	2 cut(s)	205, 1207
BsmAI	GTCTC	2 cut(s)	325, 673
BsmFI	GGGAC	2 cut(s)	205, 1207
BsnI	GGCC	2 cut(s)	202, 774
BsoBI	CYCGRG	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	143, 571, 845, 1185
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	3 cut(s)	263, 742, 1209
BspANI	GGCC	2 cut(s)	202, 774
BspCNI	CTCAG	3 cut(s)	337, 943, 1202
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	691, 847
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	4 cut(s)	151, 566, 840, 853
BspTI	CTTAAG	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	687
BssECI	CCNNGG	4 cut(s)	139, 203, 456, 693
BssMI	GATC	4 cut(s)	143, 571, 845, 1185
BssT1I	CCWWGG	4 cut(s)	139, 203, 456, 693
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	1135
BstAFI	CTTAAG	1 cut(s)	962
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	1160
BstDEI	CTNAG	5 cut(s)	324, 506, 930, 990, 1189
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	213, 1196
BstKTI	GATC	4 cut(s)	146, 574, 848, 1188
BstMAI	GTCTC	2 cut(s)	325, 673
BstMBI	GATC	4 cut(s)	143, 571, 845, 1185
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	858
BstSCI	CCNGG	2 cut(s)	400, 1111
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	1 cut(s)	960
BstV2I	GAAGAC	2 cut(s)	755, 1196
BstX2I	RGATCY	2 cut(s)	845, 1185
BstYI	RGATCY	2 cut(s)	845, 1185
BsuRI	GGCC	2 cut(s)	202, 774
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	213, 1196
BtsI	GCAGTG	2 cut(s)	717, 846
BtsIMutI	CAGTG	2 cut(s)	717, 846
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	1 cut(s)	1160
CciI	TCATGA	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	200, 305
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	1027, 1100
CviAII	CATG	8 cut(s)	49, 125, 140, 221, 317, 827, 855, 1260
CviQI	GTAC	2 cut(s)	1027, 1100
DdeI	CTNAG	5 cut(s)	324, 506, 930, 990, 1189
DpnI	GATC	4 cut(s)	145, 573, 847, 1187
DpnII	GATC	4 cut(s)	143, 571, 845, 1185
DriI	GACNNNNNGTC	1 cut(s)	1200
EaeI	YGGCCR	1 cut(s)	772
Eam1105I	GACNNNNNGTC	1 cut(s)	1200
Eco130I	CCWWGG	4 cut(s)	139, 203, 456, 693
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRI	GAATTC	2 cut(s)	134, 1042
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	4 cut(s)	139, 203, 456, 693
ErhI	CCWWGG	4 cut(s)	139, 203, 456, 693
FaeI	CATG	8 cut(s)	52, 128, 143, 224, 320, 830, 858, 1263
FalI	AAGNNNNNCTT	6 cut(s)	153, 185, 1135, 1167, 1232, 1264
FaqI	GGGAC	2 cut(s)	205, 1207
FatI	CATG	8 cut(s)	48, 124, 139, 220, 316, 826, 854, 1259
FauI	CCCGC	1 cut(s)	1216
Fnu4HI	GCNGC	1 cut(s)	949
FokI	GGATG	2 cut(s)	220, 1183
Fsp4HI	GCNGC	1 cut(s)	949
GluI	GCNGC	1 cut(s)	949
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	202, 774
HapII	CCGG	3 cut(s)	768, 1113, 1200
Hin1II	CATG	8 cut(s)	52, 128, 143, 224, 320, 830, 858, 1263
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	3 cut(s)	728, 736, 928
HpaII	CCGG	3 cut(s)	768, 1113, 1200
HphI	GGTGA	2 cut(s)	31, 416
Hpy188I	TCNGA	5 cut(s)	256, 327, 927, 1012, 1048
Hpy188III	TCNNGA	5 cut(s)	101, 221, 308, 380, 886
HpyAV	CCTTC	1 cut(s)	630
HpyCH4III	ACNGT	1 cut(s)	1135
HpyCH4IV	ACGT	2 cut(s)	282, 498
HpyCH4V	TGCA	6 cut(s)	122, 545, 703, 710, 839, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	5 cut(s)	324, 506, 930, 990, 1189
HpySE526I	ACGT	2 cut(s)	282, 498
Hsp92II	CATG	8 cut(s)	52, 128, 143, 224, 320, 830, 858, 1263
Kzo9I	GATC	4 cut(s)	143, 571, 845, 1185
LmnI	GCTCC	1 cut(s)	362
Lsp1109I	GCAGC	1 cut(s)	960
LweI	GCATC	5 cut(s)	48, 82, 109, 325, 364
MabI	ACCWGGT	1 cut(s)	400
MaeII	ACGT	2 cut(s)	282, 498
MaeIII	GTNAC	4 cut(s)	278, 283, 604, 857
MalI	GATC	4 cut(s)	145, 573, 847, 1187
MboI	GATC	4 cut(s)	143, 571, 845, 1185
MboII	GAAGA	9 cut(s)	173, 224, 434, 560, 571, 633, 760, 1196, 1252
MflI	RGATCY	2 cut(s)	845, 1185
MlyI	GAGTC	2 cut(s)	737, 922
MmeI	TCCRAC	1 cut(s)	1117
MnlI	CCTC	9 cut(s)	9, 178, 383, 627, 789, 882, 962, 988, 1173
MseI	TTAA	3 cut(s)	296, 450, 963
MslI	CAYNNNNRTG	2 cut(s)	47, 53
MspA1I	CMGCKG	1 cut(s)	742
MspCI	CTTAAG	1 cut(s)	962
MspI	CCGG	3 cut(s)	768, 1113, 1200
MspR9I	CCNGG	2 cut(s)	402, 1113
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	1113
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	4 cut(s)	143, 571, 845, 1185
NlaIII	CATG	8 cut(s)	52, 128, 143, 224, 320, 830, 858, 1263
NlaIV	GGNNCC	2 cut(s)	691, 847
NmeAIII	GCCGAG	2 cut(s)	516, 1207
NspI	RCATGY	1 cut(s)	858
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	1 cut(s)	1179
PfeI	GAWTC	1 cut(s)	736
PflFI	GACNNNGTC	1 cut(s)	665
PkrI	GCNGC	1 cut(s)	950
PleI	GAGTC	2 cut(s)	736, 922
PpsI	GAGTC	2 cut(s)	736, 922
Ppu21I	YACGTR	1 cut(s)	499
PscI	ACATGT	1 cut(s)	854
Psp6I	CCWGG	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	691, 847
PspPI	GGNCC	2 cut(s)	200, 305
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	2 cut(s)	845, 1185
PsyI	GACNNNGTC	1 cut(s)	665
RsaI	GTAC	2 cut(s)	1028, 1101
RsaNI	GTAC	2 cut(s)	1027, 1100
RseI	CAYNNNNRTG	2 cut(s)	47, 53
SaqAI	TTAA	3 cut(s)	296, 450, 963
SatI	GCNGC	1 cut(s)	949
Sau3AI	GATC	4 cut(s)	143, 571, 845, 1185
Sau96I	GGNCC	2 cut(s)	200, 305
SchI	GAGTC	2 cut(s)	737, 922
ScrFI	CCNGG	2 cut(s)	402, 1113
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	5 cut(s)	48, 82, 109, 325, 364
SfcI	CTRYAG	1 cut(s)	708
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	47, 53
SmlI	CTYRAG	4 cut(s)	793, 886, 962, 1164
SmoI	CTYRAG	4 cut(s)	793, 886, 962, 1164
SsiI	CCGC	3 cut(s)	263, 742, 1209
SspI	AATATT	1 cut(s)	958
StyD4I	CCNGG	2 cut(s)	400, 1111
StyI	CCWWGG	4 cut(s)	139, 203, 456, 693
TaaI	ACNGT	1 cut(s)	1135
TaiI	ACGT	2 cut(s)	285, 501
TaqI	TCGA	1 cut(s)	731
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	3 cut(s)	296, 450, 963
Tru9I	TTAA	3 cut(s)	296, 450, 963
TscAI	CASTG	2 cut(s)	717, 846
TseI	GCWGC	1 cut(s)	948
TspRI	CASTG	2 cut(s)	717, 846
Tth111I	GACNNNGTC	1 cut(s)	665
Vha464I	CTTAAG	1 cut(s)	962
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	4 cut(s)	134, 416, 628, 1042
XceI	RCATGY	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.