Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Forward (+)

11407299 .. 11409994

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13860.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGTGTGGATTTGAGGCAGGTAGTGGCAGGAATACTGACACTGGCAATGTTTGTGATGCTTGGGAACATGATTAAGAGAGACCATTTTGATTCTGTTGAAGAGAAGTTTCCTGGAGGAGGAGGAAGAGATACCTTAGAAACTTCCAAGTATTCAAAGGAGGGCCTCGTTAGCTTTGCTAAAAAGAATGGCGGGCCTTGGAAAGATGATGGCGAGGAGCTAAAACAGTGTTGGTCTAAGCCATCTGCAGATGATGTAGAGCAGACGGAGGGGTACGTCCTGTTCTCATTAACAAATGGCCCTGAATACCATGTTTCACAGGTCGCAGATGCCGTTGTTGTGGCAAGGTATCTTGGGGCAACTCTTGTACTTCCTGATATTAGAGGGACCAACCCAGGGGATGAGAGGAACTTTGATGAGATTTATGATGCCGAGAAGTTTATAAGTAGCCTGGATGGTGTGGTCAGAGTAGTAAAAGAACGACCCGGTAAATTATCCACAAGGAATCTTGCCGCTGTTAAGGTTCCCAATCGGGTTACAGAAGATTACATTGTTGAACATGTGGAACCAATTTATAGATCGAAGGGCAACATAAGGCTGGCTACTTACTTTCCTTCAGTTAATATGAAGAAGACGGAGGGAAAGAGTTCTAGCGATTCAGTTGCATGTTTGGGGATGTTCGGAACATTAGAGTTGCAACAAGAGATTAGTGAAGTGGTTGAATCAATGGTTGAGCGTCTGAAAACTTTGAGCCGCAAGTCAGATGGCCAATTTGTAGCAGTGGACTTGAGGGTTGACATATTGGAGAAGAAAGGCTGCCAAGGAGGAGATGAAACCGGAACAAAAAGTTGCTATAACGCACAAGAGATTGCTTTATTCCTGAGGAAACTTGGATTCGCAAAGGATACCACAATCTATCTGACCGAATCAAAATGGGACAGCAGTCTTGATGCTCTTAAAGACATCTTCCCGAAAACTTATATAAAGGATGGCATTATCCCAGCAGACAAGAAGTCAAAGTACCTGGATTCCGAGGGGTCTGAATTCGAGAAGATCATTGACTTCTACGTGTGCGCGCAAAGTGATGTATTTGTACCAGCCATTTCAGGCTTGTTCTATGCAAATGTGGCAGGTAAGAGAATTGCTTCCAGTAAAACTCAAATACTTGTCCCAGCTGACATCCCCGACGCCTCTGCATCTGCCTCCAAATTCATCACACATTATGTCTCGAAGAAGAACCATTTGGCGTATTCATGCTACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

422

Amino Acids

46.51

Weight (kDa)

5.63

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
Acc36I	ACCTGC	2 cut(s)	10, 1121
AccII	CGCG	1 cut(s)	1076
AciI	CCGC	3 cut(s)	192, 513, 754
AcoI	YGGCCR	1 cut(s)	766
AcsI	RAATTY	2 cut(s)	1043, 1208
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	1188
AfaI	GTAC	4 cut(s)	275, 369, 1022, 1095
AfiI	CCNNNNNNNGG	2 cut(s)	119, 396
AflIII	ACRYGT	2 cut(s)	559, 1068
AgsI	TTSAA	4 cut(s)	101, 156, 557, 722
AhdI	GACNNNNNGTC	1 cut(s)	1012
AjnI	CCWGG	4 cut(s)	112, 394, 450, 1023
AjuI	GAANNNNNNNTTGG	2 cut(s)	1226, 1258
AluBI	AGCT	3 cut(s)	174, 220, 1175
AluI	AGCT	3 cut(s)	174, 220, 1175
Alw26I	GTCTC	2 cut(s)	75, 1231
AoxI	GGCC	4 cut(s)	163, 194, 298, 766
ApeKI	GCWGC	1 cut(s)	816
ApoI	RAATTY	2 cut(s)	1043, 1208
Asp700I	GAANNNNTTC	2 cut(s)	646, 1144
AspLEI	GCGC	2 cut(s)	1076, 1078
AspS9I	GGNCC	4 cut(s)	163, 194, 299, 387
AsuC2I	CCSGG	1 cut(s)	486
AvaII	GGWCC	1 cut(s)	387
AxyI	CCTNAGG	1 cut(s)	881
BalI	TGGCCA	1 cut(s)	768
BarI	GAAGNNNNNNTAC	2 cut(s)	1004, 1036
BbsI	GAAGAC	1 cut(s)	638
BbvI	GCAGC	1 cut(s)	803
BccI	CCATC	5 cut(s)	203, 250, 449, 758, 983
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	4 cut(s)	644, 678, 1175, 1209
BciT130I	CCWGG	4 cut(s)	114, 396, 452, 1025
BciVI	GTATCC	1 cut(s)	898
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	2 cut(s)	75, 1231
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	2 cut(s)	10, 1121
BfuI	GTATCC	1 cut(s)	898
BisI	GCNGC	3 cut(s)	513, 754, 817
BlsI	GCNGC	3 cut(s)	514, 755, 818
Bme1390I	CCNGG	5 cut(s)	114, 396, 452, 486, 1025
Bme18I	GGWCC	1 cut(s)	387
BmeRI	GACNNNNNGTC	1 cut(s)	1012
BmgT120I	GGNCC	4 cut(s)	163, 194, 299, 387
BmiI	GGNNCC	3 cut(s)	388, 525, 567
BmrFI	CCNGG	5 cut(s)	114, 396, 452, 486, 1025
BmsI	GCATC	5 cut(s)	48, 319, 418, 940, 1205
BoxI	GACNNNNGTC	1 cut(s)	942
BpiI	GAAGAC	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	808
BpuMI	CCSGG	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	1069
BsaHI	GRCGYC	1 cut(s)	1188
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	5 cut(s)	197, 394, 395, 820, 1032
BsaWI	WCCGGW	1 cut(s)	836
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 396
Bse1I	ACTGG	2 cut(s)	48, 1149
Bse21I	CCTNAGG	1 cut(s)	881
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	4 cut(s)	114, 396, 452, 1025
BseDI	CCNNGG	5 cut(s)	197, 394, 395, 820, 1032
BseGI	GGATG	5 cut(s)	406, 460, 681, 994, 1179
BseLI	CCNNNNNNNGG	2 cut(s)	119, 396
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	872
BseNI	ACTGG	2 cut(s)	48, 1149
BsePI	GCGCGC	1 cut(s)	1074
BseRI	GAGGAG	4 cut(s)	132, 135, 230, 840
BseXI	GCAGC	1 cut(s)	803
BseYI	CCCAGC	2 cut(s)	1000, 1171
Bsh1236I	CGCG	1 cut(s)	1076
BshFI	GGCC	4 cut(s)	165, 196, 300, 768
BsiSI	CCGG	2 cut(s)	486, 837
BslFI	GGGAC	3 cut(s)	400, 950, 1154
BslI	CCNNNNNNNGG	2 cut(s)	119, 396
BsmAI	GTCTC	2 cut(s)	75, 1231
BsmFI	GGGAC	3 cut(s)	400, 950, 1154
BsnI	GGCC	4 cut(s)	165, 196, 300, 768
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	578, 1053
BspACI	CCGC	3 cut(s)	192, 513, 754
BspANI	GGCC	4 cut(s)	165, 196, 300, 768
BspCNI	CTCAG	1 cut(s)	873
BspFNI	CGCG	1 cut(s)	1076
BspLI	GGNNCC	3 cut(s)	388, 525, 567
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	2 cut(s)	10, 1121
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	48, 1149
BssECI	CCNNGG	5 cut(s)	197, 394, 395, 820, 1032
BssHII	GCGCGC	1 cut(s)	1074
BssMI	GATC	2 cut(s)	578, 1053
BssNI	GRCGYC	1 cut(s)	1188
BssT1I	CCWWGG	2 cut(s)	197, 820
Bst2UI	CCWGG	4 cut(s)	114, 396, 452, 1025
Bst4CI	ACNGT	2 cut(s)	228, 1262
Bst6I	CTCTTC	2 cut(s)	96, 121
BstACI	GRCGYC	1 cut(s)	1188
BstBAI	YACGTR	1 cut(s)	1069
BstC8I	GCNNGC	3 cut(s)	194, 600, 1076
BstDEI	CTNAG	3 cut(s)	136, 237, 881
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	5 cut(s)	406, 460, 681, 994, 1179
BstFNI	CGCG	1 cut(s)	1076
BstHHI	GCGC	2 cut(s)	1076, 1078
BstKTI	GATC	2 cut(s)	581, 1056
BstMAI	GTCTC	2 cut(s)	75, 1231
BstMBI	GATC	2 cut(s)	578, 1053
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 1127
BstNI	CCWGG	4 cut(s)	114, 396, 452, 1025
BstNSI	RCATGY	2 cut(s)	563, 669
BstPAI	GACNNNNGTC	1 cut(s)	942
BstSCI	CCNGG	5 cut(s)	112, 394, 450, 484, 1023
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	1076
BstV1I	GCAGC	1 cut(s)	803
BstV2I	GAAGAC	1 cut(s)	638
Bsu36I	CCTNAGG	1 cut(s)	881
BsuI	GTATCC	1 cut(s)	898
BsuRI	GGCC	4 cut(s)	165, 196, 300, 768
BtsCI	GGATG	5 cut(s)	406, 460, 681, 994, 1179
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	3 cut(s)	41, 233, 786
BveI	ACCTGC	2 cut(s)	10, 1121
Cac8I	GCNNGC	3 cut(s)	194, 600, 1076
CfoI	GCGC	2 cut(s)	1076, 1078
Cfr13I	GGNCC	4 cut(s)	163, 194, 299, 387
CseI	GACGC	2 cut(s)	725, 1196
Csp6I	GTAC	4 cut(s)	274, 368, 1021, 1094
CviAII	CATG	5 cut(s)	70, 311, 560, 666, 1254
CviQI	GTAC	4 cut(s)	274, 368, 1021, 1094
DdeI	CTNAG	3 cut(s)	136, 237, 881
DpnI	GATC	2 cut(s)	580, 1055
DpnII	GATC	2 cut(s)	578, 1053
DriI	GACNNNNNGTC	1 cut(s)	1012
EaeI	YGGCCR	1 cut(s)	766
Eam1104I	CTCTTC	2 cut(s)	96, 121
Eam1105I	GACNNNNNGTC	1 cut(s)	1012
EarI	CTCTTC	2 cut(s)	96, 121
Eco130I	CCWWGG	2 cut(s)	197, 820
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	600
Eco81I	CCTNAGG	1 cut(s)	881
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	1043
EcoRII	CCWGG	4 cut(s)	112, 394, 450, 1023
EcoT14I	CCWWGG	2 cut(s)	197, 820
ErhI	CCWWGG	2 cut(s)	197, 820
FaeI	CATG	5 cut(s)	73, 314, 563, 669, 1257
FaqI	GGGAC	3 cut(s)	400, 950, 1154
FatI	CATG	5 cut(s)	69, 310, 559, 665, 1253
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	3 cut(s)	513, 754, 817
FokI	GGATG	5 cut(s)	413, 467, 688, 1001, 1166
Fsp4HI	GCNGC	3 cut(s)	513, 754, 817
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	2 cut(s)	1075, 1077
GluI	GCNGC	3 cut(s)	513, 754, 817
GsaI	CCCAGC	2 cut(s)	1004, 1175
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	4 cut(s)	165, 196, 300, 768
HapII	CCGG	2 cut(s)	486, 837
HgaI	GACGC	2 cut(s)	725, 1196
HhaI	GCGC	2 cut(s)	1076, 1078
Hin1I	GRCGYC	1 cut(s)	1188
Hin1II	CATG	5 cut(s)	73, 314, 563, 669, 1257
Hin6I	GCGC	2 cut(s)	1074, 1076
HinP1I	GCGC	2 cut(s)	1074, 1076
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	7 cut(s)	92, 505, 656, 722, 894, 926, 1028
HpaII	CCGG	2 cut(s)	486, 837
Hpy166II	GTNNAC	2 cut(s)	784, 796
Hpy188I	TCNGA	7 cut(s)	467, 683, 741, 763, 921, 1033, 1042
Hpy188III	TCNNGA	6 cut(s)	374, 880, 947, 970, 1048, 1228
Hpy8I	GTNNAC	2 cut(s)	784, 796
Hpy99I	CGWCG	1 cut(s)	1190
HpyAV	CCTTC	2 cut(s)	577, 624
HpyCH4III	ACNGT	2 cut(s)	228, 1262
HpyCH4IV	ACGT	2 cut(s)	276, 1068
HpyCH4V	TGCA	5 cut(s)	248, 665, 697, 1121, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 1127
HpyF3I	CTNAG	3 cut(s)	136, 237, 881
HpySE526I	ACGT	2 cut(s)	276, 1068
Hsp92I	GRCGYC	1 cut(s)	1188
Hsp92II	CATG	5 cut(s)	73, 314, 563, 669, 1257
HspAI	GCGC	2 cut(s)	1074, 1076
Kzo9I	GATC	2 cut(s)	578, 1053
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	1 cut(s)	803
LweI	GCATC	5 cut(s)	48, 319, 418, 940, 1205
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	2 cut(s)	276, 1068
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	2 cut(s)	580, 1055
MboI	GATC	2 cut(s)	578, 1053
MlsI	TGGCCA	1 cut(s)	768
MluCI	AATT	6 cut(s)	491, 570, 770, 1043, 1140, 1208
MluNI	TGGCCA	1 cut(s)	768
Mox20I	TGGCCA	1 cut(s)	768
MroXI	GAANNNNTTC	2 cut(s)	646, 1144
MscI	TGGCCA	1 cut(s)	768
MseI	TTAA	6 cut(s)	75, 290, 519, 621, 957, 1264
Msp20I	TGGCCA	1 cut(s)	768
MspA1I	CMGCKG	2 cut(s)	515, 1175
MspI	CCGG	2 cut(s)	486, 837
MspR9I	CCNGG	5 cut(s)	114, 396, 452, 486, 1025
MvaI	CCWGG	4 cut(s)	114, 396, 452, 1025
MvnI	CGCG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	2 cut(s)	171, 1127
NciI	CCSGG	1 cut(s)	486
NdeII	GATC	2 cut(s)	578, 1053
NlaIII	CATG	5 cut(s)	73, 314, 563, 669, 1257
NlaIV	GGNNCC	3 cut(s)	388, 525, 567
NmeAIII	GCCGAG	1 cut(s)	457
NspI	RCATGY	2 cut(s)	563, 669
PasI	CCCWGGG	1 cut(s)	395
PauI	GCGCGC	1 cut(s)	1074
PciI	ACATGT	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdmI	GAANNNNTTC	2 cut(s)	646, 1144
PfeI	GAWTC	7 cut(s)	92, 505, 656, 722, 894, 926, 1028
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	514, 755, 818
Ppu21I	YACGTR	1 cut(s)	1069
PscI	ACATGT	1 cut(s)	559
PshAI	GACNNNNGTC	1 cut(s)	942
PsiI	TTATAA	1 cut(s)	443
Psp6I	CCWGG	4 cut(s)	112, 394, 450, 1023
PspFI	CCCAGC	2 cut(s)	1000, 1171
PspGI	CCWGG	4 cut(s)	112, 394, 450, 1023
PspN4I	GGNNCC	3 cut(s)	388, 525, 567
PspPI	GGNCC	4 cut(s)	163, 194, 299, 387
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PstI	CTGCAG	1 cut(s)	250
PteI	GCGCGC	1 cut(s)	1074
PvuII	CAGCTG	1 cut(s)	1175
RsaI	GTAC	4 cut(s)	275, 369, 1022, 1095
RsaNI	GTAC	4 cut(s)	274, 368, 1021, 1094
SaqAI	TTAA	6 cut(s)	75, 290, 519, 621, 957, 1264
SatI	GCNGC	3 cut(s)	513, 754, 817
Sau3AI	GATC	2 cut(s)	578, 1053
Sau96I	GGNCC	4 cut(s)	163, 194, 299, 387
ScrFI	CCNGG	5 cut(s)	114, 396, 452, 486, 1025
SfaNI	GCATC	5 cut(s)	48, 319, 418, 940, 1205
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	6 cut(s)	491, 570, 770, 1043, 1140, 1208
SsiI	CCGC	3 cut(s)	192, 513, 754
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	5 cut(s)	112, 394, 450, 484, 1023
StyI	CCWWGG	2 cut(s)	197, 820
TaaI	ACNGT	2 cut(s)	228, 1262
TaiI	ACGT	2 cut(s)	279, 1071
TaqI	TCGA	3 cut(s)	581, 1047, 1229
TaqII	GACCGA	1 cut(s)	938
TasI	AATT	6 cut(s)	491, 570, 770, 1043, 1140, 1208
TatI	WGTACW	1 cut(s)	367
TauI	GCSGC	2 cut(s)	515, 756
TfiI	GAWTC	7 cut(s)	92, 505, 656, 722, 894, 926, 1028
Tru1I	TTAA	6 cut(s)	75, 290, 519, 621, 957, 1264
Tru9I	TTAA	6 cut(s)	75, 290, 519, 621, 957, 1264
TscAI	CASTG	3 cut(s)	48, 233, 786
TseI	GCWGC	1 cut(s)	816
TspDTI	ATGAA	4 cut(s)	641, 846, 1201, 1242
TspGWI	ACGGA	2 cut(s)	281, 650
TspRI	CASTG	3 cut(s)	48, 233, 786
VpaK11BI	GGWCC	1 cut(s)	387
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	2 cut(s)	1043, 1208
XceI	RCATGY	2 cut(s)	563, 669
XmnI	GAANNNNTTC	2 cut(s)	646, 1144
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.