Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Forward (+)

1314675 .. 1318464

Gene Structure 3790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTGTGGATTTGAGGCAGGTAGTGGCAGGTATTTTGACACTGGCAATGTTTGTGATGCTTGGGAACATGATTAAGAGAGACCATTTTGATTCTGTTGAAGAGAAATTTCCGGGCAGCGAAAGGGATACCTTGGAAAATGCCAAGATTTCAAAGGAGGGCCTCAGCAAGAAGAATAGCGGGCCTTGGAAAGATGATGGTCAGGAGCTAAAACCATGTTGGTCTAAGCCATCTGATGATGTAGAGCAGACGGAGGGGTATGTCCTTTTCTCGTTAACAAATGGCCCTGAATACCATGTTTCACAGATTGCGGATGCCGTTGTCGTGGCAAGGTATCTAGGGGCAACTCTTGTACTTCCTGACATTAGAGGGACCAAACCAGGGGATGAGAGGAACTTTGAAGAGATTTACGATGTTGAGAAGTTTATAAGTAGCTTGGATGGCGTGGTTAGAGTAGCAAAAGAACGACCTGGTAAATTGTCAACAAAGAATCTTGCTGCTGTTAAGGTCCCTAATCGGGTTACAGAAGATTACATTGTAGAACACGTGGAACCGATTTATAGATCGAAGGGCAACATAAGGCTGGCAACTTACTTTCCTTCAGTTAATATGAAGAGGATAGAAAGAAAGAGTTCTAGTGATTCAGTTGCATGTTTGGCAATGTTTGGAACTCTAGAGTTGCAACCAGAGATTAACGAAGTGGTCGACTCAATGGTTGAGCGACTGAGAACTTTGAGTCGCAAGTCAAATGGCCAATTTGTAGCAGTGGATTTGAGGGTTGAGATATTGGAGCAGAATGGTTGCCAAGGAGGAGACGAATCCGGAACAAAAAGTTGCTATAATGCACAAGAGGTTGCTTTATTTCTGAGGAAAGTTGGATTTGGAAAGGGTACCACAATCTATTTGACTGAATCAAAATGGGACAGCAGCCTTGATGCTCTGAAAGACATCTTCCCAAAAACTTATATAAAGGATGGCATTATCCCTGCTGACAAGAAGTCAAAGTTCCTGGATTCAGAGGGTTCTGAATTTGAGAAGATCATTGACTTCTACGTATGTTCGCAGAGTGATGTTTTCGTACCAGCCATCTCTGGCTTGTTCTATGCAAATGTGGCGGGTAAGAGAATTGCTTCCAGTAAAACTCAAATACTTGTCCCAACCGACATCTCCGATTCCTCTGCATCTGCCTCCAATTTCATTACACATTATGTCTCAAAGAAGAACCATTTGGCGTATTCATGCCTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

417

Amino Acids

46.14

Weight (kDa)

5.76

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	428
Acc36I	ACCTGC	2 cut(s)	10, 20
Acc65I	GGTACC	1 cut(s)	890
AccB1I	GGYRCC	1 cut(s)	890
AccI	GTMKAC	1 cut(s)	705
AccIII	TCCGGA	1 cut(s)	821
AciI	CCGC	3 cut(s)	180, 311, 1115
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	2 cut(s)	107, 1028
AcuI	CTGAAG	1 cut(s)	585
AcvI	CACGTG	1 cut(s)	547
AfaI	GTAC	3 cut(s)	354, 892, 1080
AfiI	CCNNNNNNNGG	2 cut(s)	381, 517
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	3 cut(s)	101, 153, 401
AhdI	GACNNNNNGTC	1 cut(s)	997
AjnI	CCWGG	3 cut(s)	379, 469, 1008
AjuI	GAANNNNNNNTTGG	2 cut(s)	1211, 1243
AluBI	AGCT	2 cut(s)	208, 435
AluI	AGCT	2 cut(s)	208, 435
Alw26I	GTCTC	3 cut(s)	75, 807, 1216
Aor13HI	TCCGGA	1 cut(s)	821
AoxI	GGCC	4 cut(s)	160, 182, 283, 751
ApeKI	GCWGC	3 cut(s)	117, 497, 927
ApoI	RAATTY	2 cut(s)	107, 1028
Asp700I	GAANNNNTTC	2 cut(s)	631, 1129
Asp718I	GGTACC	1 cut(s)	890
AspS9I	GGNCC	5 cut(s)	160, 182, 284, 372, 508
AsuC2I	CCSGG	1 cut(s)	114
AvaII	GGWCC	2 cut(s)	372, 508
BalI	TGGCCA	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	890
BbrPI	CACGTG	1 cut(s)	547
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	129, 484, 939
BccI	CCATC	5 cut(s)	191, 238, 434, 968, 1094
BceAI	ACGGC	1 cut(s)	302
BcgI	CGANNNNNNTGC	2 cut(s)	1160, 1194
BciT130I	CCWGG	3 cut(s)	381, 471, 1010
BciVI	GTATCC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	75, 807, 1216
BfaI	CTAG	4 cut(s)	338, 636, 674, 1249
BfuAI	ACCTGC	2 cut(s)	10, 20
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	3 cut(s)	118, 498, 928
BlsI	GCNGC	3 cut(s)	119, 499, 929
Bme1390I	CCNGG	4 cut(s)	114, 381, 471, 1010
Bme18I	GGWCC	2 cut(s)	372, 508
BmeRI	GACNNNNNGTC	1 cut(s)	997
BmgT120I	GGNCC	5 cut(s)	160, 182, 284, 372, 508
BmiI	GGNNCC	4 cut(s)	373, 510, 552, 892
BmrFI	CCNGG	4 cut(s)	114, 381, 471, 1010
BmsI	GCATC	4 cut(s)	48, 304, 925, 1190
Bpu10I	CCTNAGC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	114
BsaAI	YACGTR	2 cut(s)	547, 1054
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	4 cut(s)	132, 185, 380, 805
BsaWI	WCCGGW	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 517
Bse1I	ACTGG	2 cut(s)	48, 1134
Bse3DI	GCAATG	2 cut(s)	54, 666
BseAI	TCCGGA	1 cut(s)	821
BseBI	CCWGG	3 cut(s)	381, 471, 1010
BseDI	CCNNGG	4 cut(s)	132, 185, 380, 805
BseGI	GGATG	4 cut(s)	319, 391, 445, 979
BseLI	CCNNNNNNNGG	2 cut(s)	381, 517
BseMI	GCAATG	2 cut(s)	54, 666
BseMII	CTCAG	3 cut(s)	178, 716, 857
BseNI	ACTGG	2 cut(s)	48, 1134
BseRI	GAGGAG	1 cut(s)	825
BseXI	GCAGC	3 cut(s)	129, 484, 939
BshFI	GGCC	4 cut(s)	162, 184, 285, 753
BshNI	GGYRCC	1 cut(s)	890
BsiSI	CCGG	2 cut(s)	113, 822
BslFI	GGGAC	4 cut(s)	385, 494, 935, 1139
BslI	CCNNNNNNNGG	2 cut(s)	381, 517
BsmAI	GTCTC	3 cut(s)	75, 807, 1216
BsmBI	CGTCTC	1 cut(s)	807
BsmFI	GGGAC	4 cut(s)	385, 494, 935, 1139
BsnI	GGCC	4 cut(s)	162, 184, 285, 753
Bso31I	GGTCTC	1 cut(s)	75
Bsp13I	TCCGGA	1 cut(s)	821
Bsp143I	GATC	2 cut(s)	563, 1038
BspACI	CCGC	3 cut(s)	180, 311, 1115
BspANI	GGCC	4 cut(s)	162, 184, 285, 753
BspCNI	CTCAG	3 cut(s)	177, 717, 858
BspEI	TCCGGA	1 cut(s)	821
BspLI	GGNNCC	4 cut(s)	373, 510, 552, 892
BspMI	ACCTGC	2 cut(s)	10, 20
BspT107I	GGYRCC	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	54, 666
BsrI	ACTGG	2 cut(s)	48, 1134
BssECI	CCNNGG	4 cut(s)	132, 185, 380, 805
BssMI	GATC	2 cut(s)	563, 1038
BssT1I	CCWWGG	3 cut(s)	132, 185, 805
Bst2UI	CCWGG	3 cut(s)	381, 471, 1010
Bst6I	CTCTTC	3 cut(s)	96, 396, 608
BstBAI	YACGTR	2 cut(s)	547, 1054
BstC8I	GCNNGC	2 cut(s)	182, 585
BstDEI	CTNAG	4 cut(s)	164, 225, 725, 866
BstF5I	GGATG	4 cut(s)	319, 391, 445, 979
BstKTI	GATC	2 cut(s)	566, 1041
BstMAI	GTCTC	3 cut(s)	75, 807, 1216
BstMBI	GATC	2 cut(s)	563, 1038
BstMWI	GCNNNNNNNGC	3 cut(s)	441, 656, 1112
BstNI	CCWGG	3 cut(s)	381, 471, 1010
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	4 cut(s)	112, 379, 469, 1008
BstSNI	TACGTA	1 cut(s)	1054
BstV1I	GCAGC	3 cut(s)	129, 484, 939
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	4 cut(s)	162, 184, 285, 753
BtsCI	GGATG	4 cut(s)	319, 391, 445, 979
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	2 cut(s)	41, 771
BveI	ACCTGC	2 cut(s)	10, 20
Cac8I	GCNNGC	2 cut(s)	182, 585
Cfr13I	GGNCC	5 cut(s)	160, 182, 284, 372, 508
CsiI	ACCWGGT	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	353, 891, 1079
CviAII	CATG	5 cut(s)	70, 216, 296, 651, 1239
CviQI	GTAC	3 cut(s)	353, 891, 1079
DdeI	CTNAG	4 cut(s)	164, 225, 725, 866
DpnI	GATC	2 cut(s)	565, 1040
DpnII	GATC	2 cut(s)	563, 1038
DriI	GACNNNNNGTC	1 cut(s)	997
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	3 cut(s)	96, 396, 608
Eam1105I	GACNNNNNGTC	1 cut(s)	997
EarI	CTCTTC	3 cut(s)	96, 396, 608
Eco105I	TACGTA	1 cut(s)	1054
Eco130I	CCWWGG	3 cut(s)	132, 185, 805
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	372, 508
Eco57I	CTGAAG	1 cut(s)	585
Eco72I	CACGTG	1 cut(s)	547
EcoO109I	RGGNCCY	2 cut(s)	160, 508
EcoRII	CCWGG	3 cut(s)	379, 469, 1008
EcoT14I	CCWWGG	3 cut(s)	132, 185, 805
ErhI	CCWWGG	3 cut(s)	132, 185, 805
Esp3I	CGTCTC	1 cut(s)	807
FaeI	CATG	5 cut(s)	73, 219, 299, 654, 1242
FaqI	GGGAC	4 cut(s)	385, 494, 935, 1139
FatI	CATG	5 cut(s)	69, 215, 295, 650, 1238
FauI	CCCGC	2 cut(s)	173, 1108
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	3 cut(s)	118, 498, 928
FokI	GGATG	4 cut(s)	326, 398, 452, 986
Fsp4HI	GCNGC	3 cut(s)	118, 498, 928
FspBI	CTAG	4 cut(s)	338, 636, 674, 1249
GluI	GCNGC	3 cut(s)	118, 498, 928
HaeIII	GGCC	4 cut(s)	162, 184, 285, 753
HapII	CCGG	2 cut(s)	113, 822
Hin1II	CATG	5 cut(s)	73, 219, 299, 654, 1242
HincII	GTYRAC	3 cut(s)	276, 483, 706
HindII	GTYRAC	3 cut(s)	276, 483, 706
HinfI	GANTC	9 cut(s)	92, 490, 641, 707, 736, 818, 911, 1013, 1172
HpaI	GTTAAC	1 cut(s)	276
HpaII	CCGG	2 cut(s)	113, 822
Hpy166II	GTNNAC	3 cut(s)	276, 483, 706
Hpy188I	TCNGA	6 cut(s)	235, 867, 942, 1018, 1027, 1171
Hpy188III	TCNNGA	4 cut(s)	203, 359, 674, 822
Hpy8I	GTNNAC	3 cut(s)	276, 483, 706
HpyAV	CCTTC	2 cut(s)	562, 609
HpyCH4IV	ACGT	2 cut(s)	546, 1053
HpyCH4V	TGCA	5 cut(s)	650, 682, 845, 1106, 1181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	441, 656, 1112
HpyF3I	CTNAG	4 cut(s)	164, 225, 725, 866
HpySE526I	ACGT	2 cut(s)	546, 1053
Hsp92II	CATG	5 cut(s)	73, 219, 299, 654, 1242
Kpn2I	TCCGGA	1 cut(s)	821
KpnI	GGTACC	1 cut(s)	894
KspAI	GTTAAC	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	563, 1038
LmnI	GCTCC	2 cut(s)	205, 790
Lsp1109I	GCAGC	3 cut(s)	129, 484, 939
LweI	GCATC	4 cut(s)	48, 304, 925, 1190
MabI	ACCWGGT	1 cut(s)	469
MaeI	CTAG	4 cut(s)	338, 636, 674, 1249
MaeII	ACGT	2 cut(s)	546, 1053
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	2 cut(s)	565, 1040
MboI	GATC	2 cut(s)	563, 1038
MboII	GAAGA	8 cut(s)	113, 184, 413, 539, 625, 943, 1048, 1231
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	6 cut(s)	107, 476, 755, 1028, 1125, 1192
MluNI	TGGCCA	1 cut(s)	753
MlyI	GAGTC	2 cut(s)	701, 745
MmeI	TCCRAC	1 cut(s)	856
Mox20I	TGGCCA	1 cut(s)	753
MroI	TCCGGA	1 cut(s)	821
MroXI	GAANNNNTTC	2 cut(s)	631, 1129
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	5 cut(s)	75, 275, 504, 606, 693
Msp20I	TGGCCA	1 cut(s)	753
MspI	CCGG	2 cut(s)	113, 822
MspR9I	CCNGG	4 cut(s)	114, 381, 471, 1010
MvaI	CCWGG	3 cut(s)	381, 471, 1010
MwoI	GCNNNNNNNGC	3 cut(s)	441, 656, 1112
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	2 cut(s)	563, 1038
NlaIII	CATG	5 cut(s)	73, 219, 299, 654, 1242
NlaIV	GGNNCC	4 cut(s)	373, 510, 552, 892
NspI	RCATGY	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PdmI	GAANNNNTTC	2 cut(s)	631, 1129
PfeI	GAWTC	7 cut(s)	92, 490, 641, 818, 911, 1013, 1172
PfoI	TCCNGGA	1 cut(s)	1008
PkrI	GCNGC	3 cut(s)	119, 499, 929
PleI	GAGTC	2 cut(s)	701, 744
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
PpsI	GAGTC	2 cut(s)	701, 744
Ppu21I	YACGTR	2 cut(s)	547, 1054
PpuMI	RGGWCCY	1 cut(s)	508
PsiI	TTATAA	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	3 cut(s)	379, 469, 1008
PspCI	CACGTG	1 cut(s)	547
PspGI	CCWGG	3 cut(s)	379, 469, 1008
PspN4I	GGNNCC	4 cut(s)	373, 510, 552, 892
PspPI	GGNCC	5 cut(s)	160, 182, 284, 372, 508
PspPPI	RGGWCCY	1 cut(s)	508
RsaI	GTAC	3 cut(s)	354, 892, 1080
RsaNI	GTAC	3 cut(s)	353, 891, 1079
SalI	GTCGAC	1 cut(s)	704
SaqAI	TTAA	5 cut(s)	75, 275, 504, 606, 693
SatI	GCNGC	3 cut(s)	118, 498, 928
Sau3AI	GATC	2 cut(s)	563, 1038
Sau96I	GGNCC	5 cut(s)	160, 182, 284, 372, 508
SchI	GAGTC	2 cut(s)	701, 745
ScrFI	CCNGG	4 cut(s)	114, 381, 471, 1010
SexAI	ACCWGGT	1 cut(s)	469
SfaNI	GCATC	4 cut(s)	48, 304, 925, 1190
SinI	GGWCC	2 cut(s)	372, 508
SnaBI	TACGTA	1 cut(s)	1054
Sse9I	AATT	6 cut(s)	107, 476, 755, 1028, 1125, 1192
SsiI	CCGC	3 cut(s)	180, 311, 1115
SspMI	CTAG	4 cut(s)	338, 636, 674, 1249
StyD4I	CCNGG	4 cut(s)	112, 379, 469, 1008
StyI	CCWWGG	3 cut(s)	132, 185, 805
TaiI	ACGT	2 cut(s)	549, 1056
TaqI	TCGA	2 cut(s)	566, 705
TasI	AATT	6 cut(s)	107, 476, 755, 1028, 1125, 1192
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	7 cut(s)	92, 490, 641, 818, 911, 1013, 1172
Tru1I	TTAA	5 cut(s)	75, 275, 504, 606, 693
Tru9I	TTAA	5 cut(s)	75, 275, 504, 606, 693
TscAI	CASTG	2 cut(s)	48, 771
TseI	GCWGC	3 cut(s)	117, 497, 927
TspDTI	ATGAA	3 cut(s)	626, 1186, 1227
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	48, 771
VpaK11BI	GGWCC	2 cut(s)	372, 508
XapI	RAATTY	2 cut(s)	107, 1028
XbaI	TCTAGA	1 cut(s)	673
XceI	RCATGY	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	705
XmnI	GAANNNNTTC	2 cut(s)	631, 1129
XspI	CTAG	4 cut(s)	338, 636, 674, 1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.