Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Reverse (-)

29334269 .. 29337823

Gene Structure 3555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGGTGTGGATTTGAGGCAGGTAGTGGCAGGGATACTGACAGTGACTATGTTTGTGATGCTTGGACATATGATCAAAAGAGACCATTTTGATTATGTTGAAGAGAAATTTCCTGGAGACGGAAGAGGTGCCTTGGAGAATGCCAAGATTTCAAAGGAGGGCCTCTTTTCCCTTGCTAAGAAGGGTGGGATTACCGATGATGACCAAGAGCTAAAACCATGTTGGTCTAAGCCAGCTTTGGATGATGTGGAGCAGACTGAGGGGTTTGTCCTTTTCTCATTAACAAACGGCCCCGAATACCATGTTTCACAGATTGCTGATGCAGTTGTAGTGGCAAGGTATCTAGGGGCAACTCTTGTAGTTCCTGACATTAGAGGGAGCAAACCAGGGGACGAAAGGAACTTTGAAGAGATTTATGATGTTGAGAAGTTTATTCTTAGCCTGGACGGTGTTGTTAGAGTAGCAAAAGAACGACCTGGTAAACTATCATCAAGGAATCTTGCTGCTGTGAAGGTCCCTAATCGGGTTACAGAAGATTACATTGTAGAACATGTGGAACCAATTTACAGATCCAAGGGAAACATAAGGCTGGCAACTTACTTTCCATCAGTAAACATGAAGAAGACAGAAAAAAAGAGTGCTAGTGATTCGGTTGCATGTTTAGGTATGTTTGGAACTTTAGAGTTGCAACCAGAAATCAGTGAAGTAGTTGATTCAACAGTTGAGCGCCTGAGAACTTTGAGTCGCAAGACAAATGGCCAATTTGTAGCTGTGGACTTGAGGGTTGAGATGTTGGAGCAGAATGGTTGCCAAGGAGATGAAAGTGGAACAAAAAGTTGTTACAATCCCCAAGAAATTGCTTTATTTCTGAGGAAAATTGGATTTGGCAAGGATACTACCATTTATGTGACTGAATCAAAATGGGACAGCAGCCTTGATAATCTGAAAGATATCTTTCCTAAAACTTATATAAAGGATGGCATTGTCCCTGCAGACAAAAAATCAAAGTTCCTGGATTCAGAGGGTTCTGAATATGAAAAGATCATTGACTACTATGTATGTTCTCAGAGTGATGTATTTGTACCAGCCATCTCTGGCTTGTTTTATGCAAATGTAGCCGGTAAGAGAATTGCTTCCAGCAAAACTGAAATTCTTGTACCAGCCGACATTTCCGGCTCTTCTGCATCTGCCGCCAATTTCATCACGCATTATGTATCGAAGAAGAACCATATGGCCTATTCTTGCTTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

418

Amino Acids

46.2

Weight (kDa)

5.6

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	103 - 376	2.2e-31	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	128
AciI	CCGC	1 cut(s)	1191
AclWI	GGATC	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	2 cut(s)	107, 1149
AfaI	GTAC	2 cut(s)	1083, 1158
AfiI	CCNNNNNNNGG	2 cut(s)	119, 523
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	101, 153, 407, 717
AjnI	CCWGG	5 cut(s)	112, 385, 441, 475, 1011
AluBI	AGCT	3 cut(s)	211, 236, 770
AluI	AGCT	3 cut(s)	211, 236, 770
Alw26I	GTCTC	2 cut(s)	75, 111
AlwI	GGATC	1 cut(s)	564
AoxI	GGCC	4 cut(s)	160, 289, 757, 1233
ApeKI	GCWGC	2 cut(s)	503, 930
ApoI	RAATTY	2 cut(s)	107, 1149
Asp700I	GAANNNNTTC	1 cut(s)	1132
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	3 cut(s)	160, 290, 514
AvaII	GGWCC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	759
BanI	GGYRCC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	629
BbvI	GCAGC	2 cut(s)	490, 942
BccI	CCATC	3 cut(s)	613, 971, 1097
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	5 cut(s)	114, 387, 443, 477, 1013
BciVI	GTATCC	2 cut(s)	27, 886
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	75, 111
BfaI	CTAG	3 cut(s)	344, 642, 1252
BfmI	CTRYAG	1 cut(s)	990
BfoI	RGCGCY	1 cut(s)	730
BfuAI	ACCTGC	1 cut(s)	10
BfuI	GTATCC	2 cut(s)	27, 886
BisI	GCNGC	3 cut(s)	504, 931, 1191
BlsI	GCNGC	3 cut(s)	505, 932, 1192
Bme1390I	CCNGG	5 cut(s)	114, 387, 443, 477, 1013
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	3 cut(s)	160, 290, 514
BmiI	GGNNCC	4 cut(s)	130, 292, 516, 558
BmrFI	CCNGG	5 cut(s)	114, 387, 443, 477, 1013
BmsI	GCATC	3 cut(s)	48, 310, 1193
BpiI	GAAGAC	1 cut(s)	629
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	799
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	4 cut(s)	132, 386, 573, 811
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 523
Bse118I	RCCGGY	1 cut(s)	1118
BseBI	CCWGG	5 cut(s)	114, 387, 443, 477, 1013
BseDI	CCNNGG	4 cut(s)	132, 386, 573, 811
BseGI	GGATG	2 cut(s)	247, 982
BseLI	CCNNNNNNNGG	2 cut(s)	119, 523
BseMII	CTCAG	4 cut(s)	249, 722, 860, 1079
BseXI	GCAGC	2 cut(s)	490, 942
BshFI	GGCC	4 cut(s)	162, 291, 759, 1235
BshNI	GGYRCC	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	1119, 1173
BslFI	GGGAC	4 cut(s)	404, 500, 938, 971
BslI	CCNNNNNNNGG	2 cut(s)	119, 523
BsmAI	GTCTC	2 cut(s)	75, 111
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	4 cut(s)	404, 500, 938, 971
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	4 cut(s)	162, 291, 759, 1235
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	72, 569, 1041
BspACI	CCGC	1 cut(s)	1191
BspANI	GGCC	4 cut(s)	162, 291, 759, 1235
BspCNI	CTCAG	4 cut(s)	250, 723, 861, 1078
BspLI	GGNNCC	4 cut(s)	130, 292, 516, 558
BspMAI	CTGCAG	1 cut(s)	994
BspMI	ACCTGC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	564
BspQI	GCTCTTC	1 cut(s)	1183
BspT107I	GGYRCC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	1118
BssAI	RCCGGY	1 cut(s)	1118
BssECI	CCNNGG	4 cut(s)	132, 386, 573, 811
BssMI	GATC	3 cut(s)	72, 569, 1041
BssT1I	CCWWGG	3 cut(s)	132, 573, 811
Bst2UI	CCWGG	5 cut(s)	114, 387, 443, 477, 1013
Bst4CI	ACNGT	3 cut(s)	43, 449, 721
Bst6I	CTCTTC	4 cut(s)	96, 118, 402, 1183
BstC8I	GCNNGC	2 cut(s)	234, 591
BstDEI	CTNAG	7 cut(s)	177, 228, 258, 437, 731, 869, 1065
BstF5I	GGATG	2 cut(s)	247, 982
BstH2I	RGCGCY	1 cut(s)	730
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	3 cut(s)	75, 572, 1044
BstMAI	GTCTC	2 cut(s)	75, 111
BstMBI	GATC	3 cut(s)	72, 569, 1041
BstMWI	GCNNNNNNNGC	2 cut(s)	1115, 1190
BstNI	CCWGG	5 cut(s)	114, 387, 443, 477, 1013
BstNSI	RCATGY	2 cut(s)	554, 660
BstSCI	CCNGG	5 cut(s)	112, 385, 441, 475, 1011
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	2 cut(s)	490, 942
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuI	GTATCC	2 cut(s)	27, 886
BsuRI	GGCC	4 cut(s)	162, 291, 759, 1235
BtsCI	GGATG	2 cut(s)	247, 982
BtsIMutI	CAGTG	2 cut(s)	48, 706
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	234, 591
CfoI	GCGC	1 cut(s)	729
Cfr10I	RCCGGY	1 cut(s)	1118
Cfr13I	GGNCC	3 cut(s)	160, 290, 514
CsiI	ACCWGGT	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	1082, 1157
CviAII	CATG	5 cut(s)	219, 302, 551, 616, 657
CviQI	GTAC	2 cut(s)	1082, 1157
DdeI	CTNAG	7 cut(s)	177, 228, 258, 437, 731, 869, 1065
DpnI	GATC	3 cut(s)	74, 571, 1043
DpnII	GATC	3 cut(s)	72, 569, 1041
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	4 cut(s)	96, 118, 402, 1183
EarI	CTCTTC	4 cut(s)	96, 118, 402, 1183
Eco130I	CCWWGG	3 cut(s)	132, 573, 811
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	952
Eco47I	GGWCC	1 cut(s)	514
EcoO109I	RGGNCCY	2 cut(s)	160, 514
EcoRII	CCWGG	5 cut(s)	112, 385, 441, 475, 1011
EcoRV	GATATC	1 cut(s)	952
EcoT14I	CCWWGG	3 cut(s)	132, 573, 811
ErhI	CCWWGG	3 cut(s)	132, 573, 811
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	5 cut(s)	222, 305, 554, 619, 660
FaqI	GGGAC	4 cut(s)	404, 500, 938, 971
FatI	CATG	5 cut(s)	218, 301, 550, 615, 656
FauNDI	CATATG	2 cut(s)	69, 1230
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	504, 931, 1191
FokI	GGATG	2 cut(s)	254, 989
Fsp4HI	GCNGC	3 cut(s)	504, 931, 1191
FspBI	CTAG	3 cut(s)	344, 642, 1252
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	3 cut(s)	504, 931, 1191
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	730
HaeIII	GGCC	4 cut(s)	162, 291, 759, 1235
HapII	CCGG	2 cut(s)	1119, 1173
HhaI	GCGC	1 cut(s)	729
Hin1II	CATG	5 cut(s)	222, 305, 554, 619, 660
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HinfI	GANTC	6 cut(s)	496, 647, 713, 742, 914, 1016
HpaII	CCGG	2 cut(s)	1119, 1173
Hpy166II	GTNNAC	3 cut(s)	482, 613, 775
Hpy188I	TCNGA	5 cut(s)	870, 945, 1021, 1030, 1068
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	3 cut(s)	482, 613, 775
HpyAV	CCTTC	2 cut(s)	175, 505
HpyCH4III	ACNGT	3 cut(s)	43, 449, 721
HpyCH4V	TGCA	6 cut(s)	323, 656, 688, 992, 1109, 1184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1115, 1190
HpyF3I	CTNAG	7 cut(s)	177, 228, 258, 437, 731, 869, 1065
Hsp92II	CATG	5 cut(s)	222, 305, 554, 619, 660
HspAI	GCGC	1 cut(s)	727
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	72, 569, 1041
LguI	GCTCTTC	1 cut(s)	1183
LmnI	GCTCC	3 cut(s)	250, 378, 796
Lsp1109I	GCAGC	2 cut(s)	490, 942
LweI	GCATC	3 cut(s)	48, 310, 1193
MabI	ACCWGGT	1 cut(s)	475
MaeI	CTAG	3 cut(s)	344, 642, 1252
MaeIII	GTNAC	4 cut(s)	43, 526, 839, 907
MalI	GATC	3 cut(s)	74, 571, 1043
MboI	GATC	3 cut(s)	72, 569, 1041
MboII	GAAGA	9 cut(s)	113, 135, 419, 545, 631, 634, 1170, 1231, 1234
MflI	RGATCY	1 cut(s)	569
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	8 cut(s)	107, 561, 761, 855, 876, 1128, 1149, 1195
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	1 cut(s)	751
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	9 cut(s)	9, 119, 151, 173, 253, 368, 774, 864, 1015
Mox20I	TGGCCA	1 cut(s)	759
MroXI	GAANNNNTTC	1 cut(s)	1132
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	905
Msp20I	TGGCCA	1 cut(s)	759
MspI	CCGG	2 cut(s)	1119, 1173
MspR9I	CCNGG	5 cut(s)	114, 387, 443, 477, 1013
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	5 cut(s)	114, 387, 443, 477, 1013
MwoI	GCNNNNNNNGC	2 cut(s)	1115, 1190
NdeI	CATATG	2 cut(s)	69, 1230
NdeII	GATC	3 cut(s)	72, 569, 1041
NlaIII	CATG	5 cut(s)	222, 305, 554, 619, 660
NlaIV	GGNNCC	4 cut(s)	130, 292, 516, 558
NmuCI	GTSAC	2 cut(s)	43, 907
NspI	RCATGY	2 cut(s)	554, 660
PciI	ACATGT	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	1183
PctI	GAATGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	1132
PfeI	GAWTC	5 cut(s)	496, 647, 713, 914, 1016
PfoI	TCCNGGA	2 cut(s)	112, 1011
PkrI	GCNGC	3 cut(s)	505, 932, 1192
PleI	GAGTC	1 cut(s)	750
PpsI	GAGTC	1 cut(s)	750
PpuMI	RGGWCCY	1 cut(s)	514
PscI	ACATGT	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	5 cut(s)	112, 385, 441, 475, 1011
PspGI	CCWGG	5 cut(s)	112, 385, 441, 475, 1011
PspN4I	GGNNCC	4 cut(s)	130, 292, 516, 558
PspPI	GGNCC	3 cut(s)	160, 290, 514
PspPPI	RGGWCCY	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	994
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	2 cut(s)	1083, 1158
RsaNI	GTAC	2 cut(s)	1082, 1157
RseI	CAYNNNNRTG	1 cut(s)	905
SapI	GCTCTTC	1 cut(s)	1183
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	504, 931, 1191
Sau3AI	GATC	3 cut(s)	72, 569, 1041
Sau96I	GGNCC	3 cut(s)	160, 290, 514
SchI	GAGTC	1 cut(s)	751
ScrFI	CCNGG	5 cut(s)	114, 387, 443, 477, 1013
SetI	ASST	9 cut(s)	24, 130, 213, 238, 341, 478, 516, 667, 772
SexAI	ACCWGGT	1 cut(s)	475
SfaNI	GCATC	3 cut(s)	48, 310, 1193
SfcI	CTRYAG	1 cut(s)	990
SinI	GGWCC	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	905
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
Sse9I	AATT	8 cut(s)	107, 561, 761, 855, 876, 1128, 1149, 1195
SsiI	CCGC	1 cut(s)	1191
SspMI	CTAG	3 cut(s)	344, 642, 1252
StyD4I	CCNGG	5 cut(s)	112, 385, 441, 475, 1011
StyI	CCWWGG	3 cut(s)	132, 573, 811
TaaI	ACNGT	3 cut(s)	43, 449, 721
TaqI	TCGA	1 cut(s)	1217
TasI	AATT	8 cut(s)	107, 561, 761, 855, 876, 1128, 1149, 1195
TauI	GCSGC	1 cut(s)	1193
TfiI	GAWTC	5 cut(s)	496, 647, 713, 914, 1016
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	2 cut(s)	48, 706
TseFI	GTSAC	2 cut(s)	43, 907
TseI	GCWGC	2 cut(s)	503, 930
Tsp45I	GTSAC	2 cut(s)	43, 907
TspDTI	ATGAA	4 cut(s)	632, 834, 1050, 1189
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	48, 706
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	2 cut(s)	107, 1149
XceI	RCATGY	2 cut(s)	554, 660
XmnI	GAANNNNTTC	1 cut(s)	1132
XspI	CTAG	3 cut(s)	344, 642, 1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.