Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Reverse (-)

53621710 .. 53623123

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTGCTACTTTGCTCCTTGTGGTCGTATTGGTACTGCAACCCCGGTTTATTCTCTGCTGGGAGTTTCTCCTCTTAGAGCGCGAGCCCCAAAGTTTACCCCTGTGGTTTGGGAGTCTCCGCCTCCGGGTTGGATCAAGGCGAACACGGATGGGTCTTTTTCAGATCCTGCTAGAGCTGGCTTTGGCGGGAGTACTGGCAAATGGGGGCTTAAAGTGCAAAATGAGGTATTAGGTTACTGGATTACTTGGGGTGGGGAGATTACTGATTCAAGAACAGGTGGTCGTCACACATCGACTCAAATGGAGAATGGTCATTTTCCTCATGAAGGCTACGGCAAAGCGAGCTATTTTGGCACTCTTCAGTACGCAGACAACGATAAAAACTTCAAAGATGTTCCTGTTGTTCATATGCCACAAAGCCTAGAGGCTACAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

145

Amino Acids

15.8

Weight (kDa)

7.8

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin	PF03080	79 - 131	4.4e-10	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	2 cut(s)	119, 186
AclWI	GGATC	2 cut(s)	140, 158
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	3 cut(s)	34, 193, 365
AfiI	CCNNNNNNNGG	2 cut(s)	125, 326
AgsI	TTSAA	2 cut(s)	270, 388
AluBI	AGCT	2 cut(s)	176, 345
AluI	AGCT	2 cut(s)	176, 345
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	140, 158
AlwNI	CAGNNNCTG	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	82
AsuC2I	CCSGG	2 cut(s)	44, 126
BanII	GRGCYC	1 cut(s)	88
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	349
BcnI	CCSGG	2 cut(s)	44, 126
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	171, 422
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	44, 126
BmrFI	CCNGG	2 cut(s)	44, 126
BpuMI	CCSGG	2 cut(s)	44, 126
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 326
Bse1I	ACTGG	2 cut(s)	199, 242
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	125, 326
BseNI	ACTGG	2 cut(s)	199, 242
BseRI	GAGGAG	1 cut(s)	60
BseYI	CCCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	44, 125
BslI	CCNNNNNNNGG	2 cut(s)	125, 326
BsmAI	GTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	132, 163
BspACI	CCGC	2 cut(s)	119, 186
BspFNI	CGCG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	322
BspPI	GGATC	2 cut(s)	140, 158
BsrI	ACTGG	2 cut(s)	199, 242
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	132, 163
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	3 cut(s)	84, 178, 343
BstDEI	CTNAG	1 cut(s)	74
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	135, 166
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	132, 163
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 342, 351
BstSCI	CCNGG	2 cut(s)	42, 124
BstUI	CGCG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	3 cut(s)	84, 178, 343
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	33, 192, 364
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	8 cut(s)	86, 176, 180, 208, 330, 345, 420, 428
CviKI_1	RGCY	8 cut(s)	86, 176, 180, 208, 330, 345, 420, 428
CviQI	GTAC	3 cut(s)	33, 192, 364
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	2 cut(s)	134, 165
DpnII	GATC	2 cut(s)	132, 163
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	1 cut(s)	326
FaiI	YATR	3 cut(s)	324, 408, 410
FatI	CATG	1 cut(s)	322
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	1 cut(s)	408
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	171, 422
GlaI	GCGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	62
HapII	CCGG	2 cut(s)	44, 125
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	3 cut(s)	113, 266, 295
HpaII	CCGG	2 cut(s)	44, 125
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	270, 323
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	38, 217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 342, 351
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	132, 163
LmnI	GCTCC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	171, 422
MaeIII	GTNAC	2 cut(s)	233, 284
MalI	GATC	2 cut(s)	134, 165
MboI	GATC	2 cut(s)	132, 163
MboII	GAAGA	1 cut(s)	350
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	88
MlyI	GAGTC	2 cut(s)	122, 289
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	5 cut(s)	81, 132, 217, 330, 418
MseI	TTAA	1 cut(s)	210
MspI	CCGG	2 cut(s)	44, 125
MspR9I	CCNGG	2 cut(s)	44, 126
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	214, 342, 351
NciI	CCSGG	2 cut(s)	44, 126
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	2 cut(s)	132, 163
NlaIII	CATG	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	284
PagI	TCATGA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	266
PleI	GAGTC	2 cut(s)	121, 289
PpsI	GAGTC	2 cut(s)	121, 289
PspFI	CCCAGC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	34, 193, 365
RsaNI	GTAC	3 cut(s)	33, 192, 364
SaqAI	TTAA	1 cut(s)	210
Sau3AI	GATC	2 cut(s)	132, 163
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	122, 289
ScrFI	CCNGG	2 cut(s)	44, 126
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	5 cut(s)	178, 228, 235, 280, 347
SsiI	CCGC	2 cut(s)	119, 186
SspMI	CTAG	2 cut(s)	171, 422
StyD4I	CCNGG	2 cut(s)	42, 124
TaqI	TCGA	1 cut(s)	293
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	339, 395
TspGWI	ACGGA	1 cut(s)	161
XagI	CCTNNNNNAGG	1 cut(s)	324
XspI	CTAG	2 cut(s)	171, 422
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.