Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Reverse (-)

7432193 .. 7434743

Gene Structure 2551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGGTGTTGATTTGAGGCAAGTAGTTGCTGGTATTCTCACCATTACCATGTTTGTGATGCTTGGACAGATGCTTCATAGAGATTACTTTGATTCTCTTCAGGAGAAAGCTCAGGGAGATGCACAAGATATTGAATTTGAAGGATCTAAAGTCTCTGTGAAAGATGGTCTTGTCGGAACCGTTGAAGGCAGTAAAGGACTTTGGATGGAAGATAACACTGATCTTACTCCTTGTTGGCCAACATTACTATCTGATGACGCTGTATCATCGAAAGGGTATGTTACATTCTCACTTACCAATGGTCCTGAGTACCATATCTCTCAGATCACTGATGCTGTAATGGTGGCTAAGCATCTTGGAGCAACTCTAGTACTTCCTGATATAAGAGGAAGCAAACCTGGTGATGAAAGGAATTTTGAAGATATCTATGATGCGGATAAGCTGATTAAAAGCTTGGAAAATGTCGTTAAAGTTGTGAAAAAATTGCCTGAAGAAGTTTCTCTAAGGAACATGGCCATTGTGAAGGTCCCTACCAGAGTTACAGAAGATTACATTAAAGAGCACATTGATCCCATCTTTAAATCTAAAGGAAACATTCGAGTTGCATCATACTTCCCTTCTGTAAACTTGAGAAAATCCTCACAAGATGGCGAAACTGATCCTGTAGCCTGTTTAGCAATGTTTGGGTCTTTGGAGTTGCAACCTGAAGTGAATGCAGTGGCTGAATCAATGGTTGAGCGGTTGAGGACTCATAGCCGTAAATCCGGTGGCCGTTTCATAGCAGTAGACCTTAGAATCGACATACTTGAGAAGAAAAATTGCCATACAACTGGTGTAGTAGGGTCCAAGACATGTTACAACGCTCAAGAGATTGCTTTATTCTTGAGAAAGCTTGGATTTGCCAGCGACACAACTATCTATCTGACTCAGCCAAGATGGGACAGTAGCCTCAATATCCTTAAGGATATCTTCCCAAAAACATTCACTAAGGAGGCAATAATGCCGGCAAGTAAGAGATCAAAGTACCTTGAATCAGTGAGTTCCGAGTACGAAAATGTTATCGACTTCTACATAAGCTCAAGAAGCGATGTCTTTGTTCCAGCCATCTCCGGTCTGTTTTATGCAAACACCGTTGGCAAAAGGATAGCTTTAGGTAAGCCTCAAGTGTTAGTTCCAGCAGAAATCTCAGAGACATCTGGCCTTGCTACAGATTTCATCTCTCCATACATCTCAAAGAAGAACCATTTGGCTTATTCATGCTTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

422

Amino Acids

46.8

Weight (kDa)

5.9

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	107 - 381	3.1e-30	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	739
AccI	GTMKAC	1 cut(s)	786
AciI	CCGC	2 cut(s)	434, 739
AclWI	GGATC	3 cut(s)	151, 563, 653
AcoI	YGGCCR	3 cut(s)	236, 513, 769
AcsI	RAATTY	2 cut(s)	134, 412
AcuI	CTGAAG	3 cut(s)	83, 510, 726
AfaI	GTAC	4 cut(s)	311, 372, 1025, 1049
AflII	CTTAAG	1 cut(s)	959
AflIII	ACRYGT	1 cut(s)	851
AgsI	TTSAA	5 cut(s)	134, 140, 185, 419, 1031
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	1229, 1261
AluBI	AGCT	6 cut(s)	110, 442, 453, 892, 1077, 1148
AluI	AGCT	6 cut(s)	110, 442, 453, 892, 1077, 1148
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	2 cut(s)	157, 1184
AlwI	GGATC	3 cut(s)	151, 563, 653
AlwNI	CAGNNNCTG	1 cut(s)	722
AoxI	GGCC	4 cut(s)	236, 513, 769, 1198
ApoI	RAATTY	2 cut(s)	134, 412
AspS9I	GGNCC	3 cut(s)	302, 526, 843
AsuHPI	GGTGA	2 cut(s)	31, 413
AvaII	GGWCC	3 cut(s)	302, 526, 843
BalI	TGGCCA	2 cut(s)	238, 515
Bbv12I	GWGCWC	1 cut(s)	564
BccI	CCATC	6 cut(s)	158, 199, 581, 641, 930, 1112
BceAI	ACGGC	2 cut(s)	741, 756
BciT130I	CCWGG	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	157, 1184
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	2 cut(s)	663, 1206
BfrI	CTTAAG	1 cut(s)	959
BlpI	GCTNAGC	1 cut(s)	348
BmcAI	AGTACT	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	3 cut(s)	302, 526, 843
BmgT120I	GGNCC	3 cut(s)	302, 526, 843
BmiI	GGNNCC	3 cut(s)	178, 528, 844
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	7 cut(s)	48, 60, 109, 322, 361, 421, 614
Bpu10I	CCTNAGC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	6 cut(s)	649, 827, 849, 904, 1063, 1146
BsaWI	WCCGGW	2 cut(s)	764, 1109
Bse118I	RCCGGY	1 cut(s)	1003
Bse1I	ACTGG	1 cut(s)	835
Bse3DI	GCAATG	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	399
BseGI	GGATG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	5 cut(s)	125, 297, 335, 941, 1200
BseNI	ACTGG	1 cut(s)	835
BshFI	GGCC	4 cut(s)	238, 515, 771, 1200
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	3 cut(s)	765, 1004, 1110
BslFI	GGGAC	2 cut(s)	512, 953
BsmAI	GTCTC	2 cut(s)	157, 1184
BsmFI	GGGAC	2 cut(s)	512, 953
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	4 cut(s)	238, 515, 771, 1200
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	6 cut(s)	143, 220, 324, 568, 658, 1016
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	2 cut(s)	434, 739
BspANI	GGCC	4 cut(s)	238, 515, 771, 1200
BspCNI	CTCAG	5 cut(s)	124, 298, 334, 940, 1199
BspLI	GGNNCC	3 cut(s)	178, 528, 844
BspPI	GGATC	3 cut(s)	151, 563, 653
BspTI	CTTAAG	1 cut(s)	959
BsrBI	CCGCTC	1 cut(s)	739
BsrDI	GCAATG	1 cut(s)	684
BsrFI	RCCGGY	1 cut(s)	1003
BsrI	ACTGG	1 cut(s)	835
BssAI	RCCGGY	1 cut(s)	1003
BssMI	GATC	6 cut(s)	143, 220, 324, 568, 658, 1016
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	181, 944, 1132
Bst6I	CTCTTC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	959
BstC8I	GCNNGC	2 cut(s)	904, 1005
BstDEI	CTNAG	9 cut(s)	111, 306, 321, 348, 503, 791, 927, 987, 1186
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	6 cut(s)	146, 223, 327, 571, 661, 1019
BstMAI	GTCTC	2 cut(s)	157, 1184
BstMBI	GATC	6 cut(s)	143, 220, 324, 568, 658, 1016
BstMWI	GCNNNNNNNGC	2 cut(s)	674, 1083
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	855
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	2 cut(s)	663, 1206
BstX2I	RGATCY	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	4 cut(s)	238, 515, 771, 1200
BtgZI	GCGATG	1 cut(s)	1101
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	4 cut(s)	216, 327, 723, 1041
Cac8I	GCNNGC	2 cut(s)	904, 1005
CaiI	CAGNNNCTG	1 cut(s)	722
Cfr10I	RCCGGY	1 cut(s)	1003
Cfr13I	GGNCC	3 cut(s)	302, 526, 843
CseI	GACGC	1 cut(s)	266
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	4 cut(s)	310, 371, 1024, 1048
CviAII	CATG	4 cut(s)	49, 511, 852, 1257
CviQI	GTAC	4 cut(s)	310, 371, 1024, 1048
DdeI	CTNAG	9 cut(s)	111, 306, 321, 348, 503, 791, 927, 987, 1186
DpnI	GATC	6 cut(s)	145, 222, 326, 570, 660, 1018
DpnII	GATC	6 cut(s)	143, 220, 324, 568, 658, 1016
DraI	TTTAAA	1 cut(s)	580
EaeI	YGGCCR	3 cut(s)	236, 513, 769
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco32I	GATATC	2 cut(s)	424, 967
Eco47I	GGWCC	3 cut(s)	302, 526, 843
Eco57I	CTGAAG	3 cut(s)	83, 510, 726
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	397
EcoRV	GATATC	2 cut(s)	424, 967
FaeI	CATG	4 cut(s)	52, 514, 855, 1260
FalI	AAGNNNNNCTT	6 cut(s)	153, 185, 953, 985, 1132, 1164
FaqI	GGGAC	2 cut(s)	512, 953
FatI	CATG	4 cut(s)	48, 510, 851, 1256
FblI	GTMKAC	1 cut(s)	786
FokI	GGATG	1 cut(s)	217
FspBI	CTAG	1 cut(s)	368
HaeIII	GGCC	4 cut(s)	238, 515, 771, 1200
HapII	CCGG	3 cut(s)	765, 1004, 1110
HgaI	GACGC	1 cut(s)	266
Hin1II	CATG	4 cut(s)	52, 514, 855, 1260
HindIII	AAGCTT	2 cut(s)	451, 890
HinfI	GANTC	6 cut(s)	92, 725, 748, 795, 925, 1031
HpaII	CCGG	3 cut(s)	765, 1004, 1110
HphI	GGTGA	2 cut(s)	31, 413
Hpy166II	GTNNAC	2 cut(s)	625, 787
Hpy188I	TCNGA	6 cut(s)	176, 253, 324, 924, 1045, 1189
Hpy188III	TCNNGA	6 cut(s)	101, 305, 377, 866, 883, 1080
Hpy8I	GTNNAC	2 cut(s)	625, 787
HpyAV	CCTTC	4 cut(s)	134, 179, 517, 627
HpyCH4III	ACNGT	3 cut(s)	181, 944, 1132
HpyCH4V	TGCA	5 cut(s)	122, 605, 700, 716, 1124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	674, 1083
HpyF3I	CTNAG	9 cut(s)	111, 306, 321, 348, 503, 791, 927, 987, 1186
Hsp92II	CATG	4 cut(s)	52, 514, 855, 1260
KroI	GCCGGC	1 cut(s)	1003
KroNI	GCCGGC	1 cut(s)	1005
Kzo9I	GATC	6 cut(s)	143, 220, 324, 568, 658, 1016
LmnI	GCTCC	1 cut(s)	359
LweI	GCATC	7 cut(s)	48, 60, 109, 322, 361, 421, 614
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	3 cut(s)	280, 538, 854
MalI	GATC	6 cut(s)	145, 222, 326, 570, 660, 1018
MbiI	CCGCTC	1 cut(s)	739
MboI	GATC	6 cut(s)	143, 220, 324, 568, 658, 1016
MboII	GAAGA	8 cut(s)	89, 221, 431, 503, 557, 823, 961, 1249
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	564
MlsI	TGGCCA	2 cut(s)	238, 515
MluCI	AATT	4 cut(s)	134, 412, 482, 817
MluNI	TGGCCA	2 cut(s)	238, 515
MlyI	GAGTC	2 cut(s)	742, 919
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	7 cut(s)	9, 380, 649, 738, 959, 985, 1170
Mox20I	TGGCCA	2 cut(s)	238, 515
MroNI	GCCGGC	1 cut(s)	1003
MscI	TGGCCA	2 cut(s)	238, 515
MseI	TTAA	5 cut(s)	447, 468, 555, 579, 960
MslI	CAYNNNNRTG	2 cut(s)	47, 53
Msp20I	TGGCCA	2 cut(s)	238, 515
MspCI	CTTAAG	1 cut(s)	959
MspI	CCGG	3 cut(s)	765, 1004, 1110
MspR9I	CCNGG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	674, 1083
NaeI	GCCGGC	1 cut(s)	1005
NdeII	GATC	6 cut(s)	143, 220, 324, 568, 658, 1016
NgoMIV	GCCGGC	1 cut(s)	1003
NlaIII	CATG	4 cut(s)	52, 514, 855, 1260
NlaIV	GGNNCC	3 cut(s)	178, 528, 844
NspI	RCATGY	1 cut(s)	855
PciI	ACATGT	1 cut(s)	851
PctI	GAATGC	1 cut(s)	718
PdiI	GCCGGC	1 cut(s)	1005
PfeI	GAWTC	4 cut(s)	92, 725, 795, 1031
PleI	GAGTC	2 cut(s)	742, 919
PpsI	GAGTC	2 cut(s)	742, 919
PpuMI	RGGWCCY	1 cut(s)	526
PscI	ACATGT	1 cut(s)	851
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	3 cut(s)	178, 528, 844
PspPI	GGNCC	3 cut(s)	302, 526, 843
PspPPI	RGGWCCY	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	4 cut(s)	311, 372, 1025, 1049
RsaNI	GTAC	4 cut(s)	310, 371, 1024, 1048
RseI	CAYNNNNRTG	2 cut(s)	47, 53
SaqAI	TTAA	5 cut(s)	447, 468, 555, 579, 960
Sau3AI	GATC	6 cut(s)	143, 220, 324, 568, 658, 1016
Sau96I	GGNCC	3 cut(s)	302, 526, 843
ScaI	AGTACT	1 cut(s)	372
SchI	GAGTC	2 cut(s)	742, 919
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	564
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	7 cut(s)	48, 60, 109, 322, 361, 421, 614
SfcI	CTRYAG	2 cut(s)	663, 1206
SinI	GGWCC	3 cut(s)	302, 526, 843
SmiMI	CAYNNNNRTG	2 cut(s)	47, 53
SmlI	CTYRAG	7 cut(s)	628, 806, 864, 883, 959, 1078, 1161
SmoI	CTYRAG	7 cut(s)	628, 806, 864, 883, 959, 1078, 1161
Sse9I	AATT	4 cut(s)	134, 412, 482, 817
SsiI	CCGC	2 cut(s)	434, 739
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	3 cut(s)	181, 944, 1132
TaqI	TCGA	4 cut(s)	269, 598, 798, 1062
TasI	AATT	4 cut(s)	134, 412, 482, 817
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	4 cut(s)	92, 725, 795, 1031
Tru1I	TTAA	5 cut(s)	447, 468, 555, 579, 960
Tru9I	TTAA	5 cut(s)	447, 468, 555, 579, 960
TscAI	CASTG	4 cut(s)	223, 334, 723, 1041
TspDTI	ATGAA	5 cut(s)	65, 420, 766, 1204, 1245
TspRI	CASTG	4 cut(s)	223, 334, 723, 1041
Vha464I	CTTAAG	1 cut(s)	959
VpaK11BI	GGWCC	3 cut(s)	302, 526, 843
XapI	RAATTY	2 cut(s)	134, 412
XceI	RCATGY	1 cut(s)	855
XmiI	GTMKAC	1 cut(s)	786
XspI	CTAG	1 cut(s)	368
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.