Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Reverse (-)

65220021 .. 65222723

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGGTGTGGATTTGAGGCAGGTAGTGGCAGGGATACTGACAGTGACAATGTTTGTGATGCTTGGGCATATGATCAAAAGAGACCATTTTGATTATGTTGAAGAGAAATTTCCTGGAGAAGGAAGAGATGCCTTAGAGAATGCCAAGATTTCAAAGGAGGGTCTTTTTTCCCTTGCTAAGAAGGGTGGGAATTTTAATGATGATGGCGAAGAGCTAAAACCATGTTGGTCTAAGCCAGCTTTGGATGATGTAGAGCAGACAGAGGGGTTTGTCCTTTTCTCGTTAACAAATGGTCCTGAATACCATGTTTCACAGATTGCTGATGCAGTTGTGGTGGCAAGGTATCTTGGGGCAACTCTTGTAGTTCCTGACATTAGAGGGAGCAAACCAGGGGATGAAAGGAGCTTTGAAGAGATTTATGATGTTGAGAAGTTTATTCTTAGCCTGGACGGTGTTGTTAGAGTAGCAAAAGAACGACCTGGTAAACTATCATCAAGGAATCTTGCTGCTGTGAAGGTCCCTAATCGGGTTACAGAAGATTACATTGTAGAACATGTGGAACCAATTTACAGATCCAAGGGCAACATAAGGCTGGCGACTTACTTTCCCTCGGTAAATATGAAGAAGACAGAAAAAAAGAGTGCTAGTGATTCGGTTGCATGTTTAGGAATGTTTGGAACTTTAGAGTTGCAACCAGAAATTAGTGAAGTAGTTGATTCAATGGTTGAGCGCCTGAGAACTTTGAGTCGCAAGACAAATGGCCAATTTATAGCAGTGGACTTGAGGGTTGAGATGTTGGAGCAGAATGGTTGCCAAGGAGATGAAAGTGGAACAAAAAGTTGTTACAATCCGCAAGAGATCGCTTTATTTCTGAGGAAAATTGGATTTGGTAAGGATACTACCATTTATGTGACTGAATCAAAATGGGACAGCAGCCTTGATAATCTGAAAGATATCTTTCCTAAAACTTACGTAAAGGATGGCATTATCCCTGCAGACAAAAAATCAAAGTTCCTGGGTTCAGAGGGTTCTGAATTTGAAAAGATCATCGACTACTATGTATGTTCTCAGAGTGATGTATTTGTACCAGCCATCTCTGGCTTGTTCTATGCAAATGTAGCCGGCAAGAGAATTGCTTCCAGCAAAACTGAAATACTTGTGCCAGCTGACATTTCCAGCTCTTCTGCATCTGCCACTAATTTCATCACACATTATGTGTCAAAGAAGAACCATTTGGCCTATTCATGCTTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

419

Amino Acids

46.36

Weight (kDa)

5.61

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	104 - 377	8.1e-32	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	10
AciI	CCGC	1 cut(s)	851
AclWI	GGATC	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	3 cut(s)	107, 190, 1034
AfaI	GTAC	1 cut(s)	1086
AfiI	CCNNNNNNNGG	2 cut(s)	119, 526
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	5 cut(s)	101, 153, 410, 720, 1040
AjnI	CCWGG	5 cut(s)	112, 388, 444, 478, 1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	1217, 1249
AluBI	AGCT	5 cut(s)	214, 239, 405, 1166, 1179
AluI	AGCT	5 cut(s)	214, 239, 405, 1166, 1179
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	567
AoxI	GGCC	2 cut(s)	760, 1236
ApeKI	GCWGC	2 cut(s)	506, 933
ApoI	RAATTY	3 cut(s)	107, 190, 1034
Asp700I	GAANNNNTTC	1 cut(s)	1135
AspLEI	GCGC	1 cut(s)	732
AspS9I	GGNCC	2 cut(s)	293, 517
AvaII	GGWCC	2 cut(s)	293, 517
BalI	TGGCCA	1 cut(s)	762
BbsI	GAAGAC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	493, 945
BccI	CCATC	3 cut(s)	197, 974, 1100
BciT130I	CCWGG	5 cut(s)	114, 390, 446, 480, 1016
BciVI	GTATCC	2 cut(s)	27, 889
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	645, 1255
BfmI	CTRYAG	1 cut(s)	993
BfoI	RGCGCY	1 cut(s)	733
BfuAI	ACCTGC	1 cut(s)	10
BfuI	GTATCC	2 cut(s)	27, 889
BisI	GCNGC	2 cut(s)	507, 934
BlsI	GCNGC	2 cut(s)	508, 935
Bme1390I	CCNGG	5 cut(s)	114, 390, 446, 480, 1016
Bme18I	GGWCC	2 cut(s)	293, 517
BmgT120I	GGNCC	2 cut(s)	293, 517
BmiI	GGNNCC	2 cut(s)	519, 561
BmrFI	CCNGG	5 cut(s)	114, 390, 446, 480, 1016
BmsI	GCATC	4 cut(s)	48, 118, 313, 1196
BpiI	GAAGAC	1 cut(s)	632
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	802
BsaAI	YACGTR	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	5 cut(s)	389, 576, 609, 814, 1015
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 526
Bse118I	RCCGGY	1 cut(s)	1121
BseBI	CCWGG	5 cut(s)	114, 390, 446, 480, 1016
BseDI	CCNNGG	5 cut(s)	389, 576, 609, 814, 1015
BseGI	GGATG	3 cut(s)	250, 400, 985
BseLI	CCNNNNNNNGG	2 cut(s)	119, 526
BseMII	CTCAG	3 cut(s)	725, 863, 1082
BseXI	GCAGC	2 cut(s)	493, 945
BshFI	GGCC	2 cut(s)	762, 1238
BsiSI	CCGG	1 cut(s)	1122
BslFI	GGGAC	2 cut(s)	503, 941
BslI	CCNNNNNNNGG	2 cut(s)	119, 526
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	503, 941
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	762, 1238
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	72, 572, 858, 1044
BspACI	CCGC	1 cut(s)	851
BspANI	GGCC	2 cut(s)	762, 1238
BspCNI	CTCAG	3 cut(s)	726, 864, 1081
BspLI	GGNNCC	2 cut(s)	519, 561
BspMAI	CTGCAG	1 cut(s)	997
BspMI	ACCTGC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	567
BspQI	GCTCTTC	2 cut(s)	204, 1186
BspTNI	GGTCTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	1121
BssAI	RCCGGY	1 cut(s)	1121
BssECI	CCNNGG	5 cut(s)	389, 576, 609, 814, 1015
BssMI	GATC	4 cut(s)	72, 572, 858, 1044
BssT1I	CCWWGG	2 cut(s)	576, 814
Bst2UI	CCWGG	5 cut(s)	114, 390, 446, 480, 1016
Bst4CI	ACNGT	2 cut(s)	43, 452
Bst6I	CTCTTC	5 cut(s)	96, 118, 204, 405, 1186
BstBAI	YACGTR	1 cut(s)	973
BstC8I	GCNNGC	4 cut(s)	237, 594, 1123, 1164
BstDEI	CTNAG	7 cut(s)	133, 177, 231, 440, 734, 872, 1068
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	250, 400, 985
BstH2I	RGCGCY	1 cut(s)	733
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	4 cut(s)	75, 575, 861, 1047
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	4 cut(s)	72, 572, 858, 1044
BstMWI	GCNNNNNNNGC	1 cut(s)	1118
BstNI	CCWGG	5 cut(s)	114, 390, 446, 480, 1016
BstNSI	RCATGY	2 cut(s)	557, 663
BstSCI	CCNGG	5 cut(s)	112, 388, 444, 478, 1014
BstSFI	CTRYAG	1 cut(s)	993
BstSNI	TACGTA	1 cut(s)	973
BstV1I	GCAGC	2 cut(s)	493, 945
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BsuI	GTATCC	2 cut(s)	27, 889
BsuRI	GGCC	2 cut(s)	762, 1238
BtsCI	GGATG	3 cut(s)	250, 400, 985
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	2 cut(s)	48, 780
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	4 cut(s)	237, 594, 1123, 1164
CfoI	GCGC	1 cut(s)	732
Cfr10I	RCCGGY	1 cut(s)	1121
Cfr13I	GGNCC	2 cut(s)	293, 517
CsiI	ACCWGGT	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	1085
CviAII	CATG	5 cut(s)	222, 305, 554, 660, 1245
CviQI	GTAC	1 cut(s)	1085
DdeI	CTNAG	7 cut(s)	133, 177, 231, 440, 734, 872, 1068
DpnI	GATC	4 cut(s)	74, 574, 860, 1046
DpnII	GATC	4 cut(s)	72, 572, 858, 1044
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	5 cut(s)	96, 118, 204, 405, 1186
EarI	CTCTTC	5 cut(s)	96, 118, 204, 405, 1186
Eco105I	TACGTA	1 cut(s)	973
Eco130I	CCWWGG	2 cut(s)	576, 814
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	2 cut(s)	293, 517
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	5 cut(s)	112, 388, 444, 478, 1014
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	2 cut(s)	576, 814
ErhI	CCWWGG	2 cut(s)	576, 814
FaeI	CATG	5 cut(s)	225, 308, 557, 663, 1248
FaqI	GGGAC	2 cut(s)	503, 941
FatI	CATG	5 cut(s)	221, 304, 553, 659, 1244
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	507, 934
FokI	GGATG	3 cut(s)	257, 407, 992
Fsp4HI	GCNGC	2 cut(s)	507, 934
FspBI	CTAG	2 cut(s)	645, 1255
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	2 cut(s)	507, 934
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	733
HaeIII	GGCC	2 cut(s)	762, 1238
HapII	CCGG	1 cut(s)	1122
HhaI	GCGC	1 cut(s)	732
Hin1II	CATG	5 cut(s)	225, 308, 557, 663, 1248
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	5 cut(s)	499, 650, 716, 745, 917
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	1122
Hpy166II	GTNNAC	3 cut(s)	285, 485, 778
Hpy188I	TCNGA	5 cut(s)	873, 948, 1024, 1033, 1071
Hpy188III	TCNNGA	2 cut(s)	296, 368
Hpy8I	GTNNAC	3 cut(s)	285, 485, 778
HpyAV	CCTTC	3 cut(s)	113, 175, 508
HpyCH4III	ACNGT	2 cut(s)	43, 452
HpyCH4IV	ACGT	1 cut(s)	972
HpyCH4V	TGCA	6 cut(s)	326, 659, 691, 995, 1112, 1187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1118
HpyF3I	CTNAG	7 cut(s)	133, 177, 231, 440, 734, 872, 1068
HpySE526I	ACGT	1 cut(s)	972
Hsp92II	CATG	5 cut(s)	225, 308, 557, 663, 1248
HspAI	GCGC	1 cut(s)	730
KroI	GCCGGC	1 cut(s)	1121
KroNI	GCCGGC	1 cut(s)	1123
Ksp22I	TGATCA	1 cut(s)	72
KspAI	GTTAAC	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	72, 572, 858, 1044
LguI	GCTCTTC	2 cut(s)	204, 1186
LmnI	GCTCC	3 cut(s)	381, 402, 799
Lsp1109I	GCAGC	2 cut(s)	493, 945
LweI	GCATC	4 cut(s)	48, 118, 313, 1196
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	2 cut(s)	645, 1255
MaeII	ACGT	1 cut(s)	972
MaeIII	GTNAC	4 cut(s)	43, 529, 842, 910
MalI	GATC	4 cut(s)	74, 574, 860, 1046
MboI	GATC	4 cut(s)	72, 572, 858, 1044
MboII	GAAGA	9 cut(s)	113, 135, 221, 422, 548, 634, 637, 1173, 1237
MflI	RGATCY	1 cut(s)	572
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	9 cut(s)	107, 190, 564, 699, 764, 879, 1034, 1131, 1198
MluNI	TGGCCA	1 cut(s)	762
MlyI	GAGTC	1 cut(s)	754
MmeI	TCCRAC	1 cut(s)	777
MnlI	CCTC	8 cut(s)	9, 151, 256, 371, 619, 777, 867, 1018
Mox20I	TGGCCA	1 cut(s)	762
MroNI	GCCGGC	1 cut(s)	1121
MroXI	GAANNNNTTC	1 cut(s)	1135
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	2 cut(s)	195, 284
MslI	CAYNNNNRTG	1 cut(s)	908
Msp20I	TGGCCA	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	1166
MspI	CCGG	1 cut(s)	1122
MspR9I	CCNGG	5 cut(s)	114, 390, 446, 480, 1016
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	5 cut(s)	114, 390, 446, 480, 1016
MwoI	GCNNNNNNNGC	1 cut(s)	1118
NaeI	GCCGGC	1 cut(s)	1123
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	4 cut(s)	72, 572, 858, 1044
NgoMIV	GCCGGC	1 cut(s)	1121
NlaIII	CATG	5 cut(s)	225, 308, 557, 663, 1248
NlaIV	GGNNCC	2 cut(s)	519, 561
NmuCI	GTSAC	2 cut(s)	43, 910
NspI	RCATGY	2 cut(s)	557, 663
PciI	ACATGT	1 cut(s)	553
PciSI	GCTCTTC	2 cut(s)	204, 1186
PctI	GAATGC	1 cut(s)	145
PdiI	GCCGGC	1 cut(s)	1123
PdmI	GAANNNNTTC	1 cut(s)	1135
PfeI	GAWTC	4 cut(s)	499, 650, 716, 917
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	508, 935
PleI	GAGTC	1 cut(s)	753
PpsI	GAGTC	1 cut(s)	753
Ppu21I	YACGTR	1 cut(s)	973
PpuMI	RGGWCCY	1 cut(s)	517
PscI	ACATGT	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	5 cut(s)	112, 388, 444, 478, 1014
PspGI	CCWGG	5 cut(s)	112, 388, 444, 478, 1014
PspN4I	GGNNCC	2 cut(s)	519, 561
PspPI	GGNCC	2 cut(s)	293, 517
PspPPI	RGGWCCY	1 cut(s)	517
PstI	CTGCAG	1 cut(s)	997
PsuI	RGATCY	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	1166
RsaI	GTAC	1 cut(s)	1086
RsaNI	GTAC	1 cut(s)	1085
RseI	CAYNNNNRTG	1 cut(s)	908
SapI	GCTCTTC	2 cut(s)	204, 1186
SaqAI	TTAA	2 cut(s)	195, 284
SatI	GCNGC	2 cut(s)	507, 934
Sau3AI	GATC	4 cut(s)	72, 572, 858, 1044
Sau96I	GGNCC	2 cut(s)	293, 517
SchI	GAGTC	1 cut(s)	754
ScrFI	CCNGG	5 cut(s)	114, 390, 446, 480, 1016
SexAI	ACCWGGT	1 cut(s)	478
SfaNI	GCATC	4 cut(s)	48, 118, 313, 1196
SfcI	CTRYAG	1 cut(s)	993
SinI	GGWCC	2 cut(s)	293, 517
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
SnaBI	TACGTA	1 cut(s)	973
Sse9I	AATT	9 cut(s)	107, 190, 564, 699, 764, 879, 1034, 1131, 1198
SsiI	CCGC	1 cut(s)	851
SspMI	CTAG	2 cut(s)	645, 1255
StyD4I	CCNGG	5 cut(s)	112, 388, 444, 478, 1014
StyI	CCWWGG	2 cut(s)	576, 814
TaaI	ACNGT	2 cut(s)	43, 452
TaiI	ACGT	1 cut(s)	975
TaqI	TCGA	1 cut(s)	1050
TasI	AATT	9 cut(s)	107, 190, 564, 699, 764, 879, 1034, 1131, 1198
TfiI	GAWTC	4 cut(s)	499, 650, 716, 917
Tru1I	TTAA	2 cut(s)	195, 284
Tru9I	TTAA	2 cut(s)	195, 284
TscAI	CASTG	2 cut(s)	48, 780
TseFI	GTSAC	2 cut(s)	43, 910
TseI	GCWGC	2 cut(s)	506, 933
Tsp45I	GTSAC	2 cut(s)	43, 910
TspDTI	ATGAA	5 cut(s)	411, 635, 837, 1192, 1233
TspRI	CASTG	2 cut(s)	48, 780
VpaK11BI	GGWCC	2 cut(s)	293, 517
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	3 cut(s)	107, 190, 1034
XceI	RCATGY	2 cut(s)	557, 663
XmnI	GAANNNNTTC	1 cut(s)	1135
XspI	CTAG	2 cut(s)	645, 1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.