Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Forward (+)

13140800 .. 13144227

Gene Structure 3428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1145700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGTGTGGATTTGAGGCAGGTAGTGGCAGGAATACTGACACTGGCAATGTTTGTGATGCTTGGGAACATGATTAAGAGAGACCATTTTGATTCTGTTGAAGAGAAATTTCCTGGAGGAGGAGGAAGAGATACCTTAGAAACTTCCAAGTATTCAAAGGAGGGCCTCGTTAGCTTTGCTAAGAAGAATGGCGGGCCTTGGAAAGATGATGGCGAGGAGCTAAAACAGTGTTGGTCTAAGCCATCTGATGATGTAGAGCAGACGGAGGGGTACGTCCTGTTCTCATTAACAAATGGCCCTGAATACCATGTTTCACAGGTCGCAGATGCCGTTGTTGTGGCAAGGTATCTTGGGGCAACTCTTGTACTTCCTGATATTAGAGGGACCAACCCAGGAGATGAGAGGAACTTTGATGAGATTTATGATGCCGAGAAGTTTATAAGTAGCCTGGATGGTGTGGTCAGAGTAGTAAAAGAACGACCCGGTAAATTATCCACAAGGAATCTTGCCGCTGTTAAGGTTCCCAATCGGGTTACAGAAGATTACATTGTTGAACATGTGGAACCAATTTATAGATCGAAGGGCAACATAAGGCTGGCTACTTACTTTCCTTCGGTTAATATGAAGAAGACAGAAGGAAAGAGTTCTAGCGATTCAGTTGCATGTTTGGGGATGTTCGGAACATTAGAGTTGCAACAAGAGATTAGTGAAGTGGTTGAATCAATGGTTGAGCGTCTGAAAACTTTGAGCCGCAAGTCAGATGGCCAATTTGTAGCAGTGGACTTGAGGGTTGACATATTGGAGAAGAAAGGCTGCCAAGGAGGAGATGAAACCGGAACAAAAAGTTGCTATAACGCACAAGAGATTGCTTTATTCCTGAGGAAACTTGGATTCGCAAAGGATACCACAATCTATCTGACCGAATCAAAATGGGACAGCAGTCTTGATGCTCTTAAAGACATCTTCCCGAAAACTTATATAAAGGATGGCATTATCCCAGCAGACAAGAAGTCAAAGTACCTGGGTTCCGAGGGGTCTGAATTCGAGAAGATCATTGACTTCTACGTGTGTGCGCAAAGTGATGTATTTGTACCAGCCATTTCAGGCTTGTTCTATGCAAATGTGGCAGGTAAGAGAATTGCTTCCAGTAAAACTCAAATACTTGTCCCAGCTGACATCCCCGACGCCTCTGCATCTGCCTCCAAATTCATGACACATTATGTCTCGAAGAAGAACCATTTGGCTTATTCATGCTACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

421

Amino Acids

46.4

Weight (kDa)

5.76

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	105 - 379	5.5e-29	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
Acc16I	TGCGCA	1 cut(s)	1074
Acc36I	ACCTGC	2 cut(s)	10, 1118
AciI	CCGC	3 cut(s)	192, 510, 751
AcoI	YGGCCR	1 cut(s)	763
AcsI	RAATTY	3 cut(s)	107, 1040, 1205
AcyI	GRCGYC	1 cut(s)	1185
AfaI	GTAC	4 cut(s)	272, 366, 1019, 1092
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflIII	ACRYGT	2 cut(s)	556, 1065
AgsI	TTSAA	4 cut(s)	101, 156, 554, 719
AhdI	GACNNNNNGTC	1 cut(s)	1009
AjnI	CCWGG	4 cut(s)	112, 391, 447, 1020
AjuI	GAANNNNNNNTTGG	2 cut(s)	1223, 1255
AluBI	AGCT	3 cut(s)	174, 220, 1172
AluI	AGCT	3 cut(s)	174, 220, 1172
Alw26I	GTCTC	2 cut(s)	75, 1228
AoxI	GGCC	4 cut(s)	163, 194, 295, 763
ApeKI	GCWGC	1 cut(s)	813
ApoI	RAATTY	3 cut(s)	107, 1040, 1205
Asp700I	GAANNNNTTC	2 cut(s)	643, 1141
AspLEI	GCGC	1 cut(s)	1075
AspS9I	GGNCC	4 cut(s)	163, 194, 296, 384
AsuC2I	CCSGG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	384
AxyI	CCTNAGG	1 cut(s)	878
BalI	TGGCCA	1 cut(s)	765
BarI	GAAGNNNNNNTAC	2 cut(s)	1001, 1033
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	1 cut(s)	800
BccI	CCATC	5 cut(s)	203, 250, 446, 755, 980
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	4 cut(s)	641, 675, 1172, 1206
BciT130I	CCWGG	4 cut(s)	114, 393, 449, 1022
BciVI	GTATCC	1 cut(s)	895
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	75, 1228
BfaI	CTAG	1 cut(s)	648
BfuAI	ACCTGC	2 cut(s)	10, 1118
BfuI	GTATCC	1 cut(s)	895
BisI	GCNGC	3 cut(s)	510, 751, 814
BlsI	GCNGC	3 cut(s)	511, 752, 815
Bme1390I	CCNGG	5 cut(s)	114, 393, 449, 483, 1022
Bme18I	GGWCC	1 cut(s)	384
BmeRI	GACNNNNNGTC	1 cut(s)	1009
BmgT120I	GGNCC	4 cut(s)	163, 194, 296, 384
BmiI	GGNNCC	4 cut(s)	385, 522, 564, 1027
BmrFI	CCNGG	5 cut(s)	114, 393, 449, 483, 1022
BmsI	GCATC	5 cut(s)	48, 316, 415, 937, 1202
BoxI	GACNNNNGTC	1 cut(s)	939
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	805
BpuMI	CCSGG	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	1066
BsaHI	GRCGYC	1 cut(s)	1185
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	5 cut(s)	197, 391, 817, 1021, 1029
BsaWI	WCCGGW	1 cut(s)	833
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	48, 1146
Bse21I	CCTNAGG	1 cut(s)	878
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	4 cut(s)	114, 393, 449, 1022
BseDI	CCNNGG	5 cut(s)	197, 391, 817, 1021, 1029
BseGI	GGATG	4 cut(s)	457, 678, 991, 1176
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	869
BseNI	ACTGG	2 cut(s)	48, 1146
BseRI	GAGGAG	4 cut(s)	132, 135, 230, 837
BseXI	GCAGC	1 cut(s)	800
BseYI	CCCAGC	2 cut(s)	997, 1168
BshFI	GGCC	4 cut(s)	165, 196, 297, 765
BsiSI	CCGG	2 cut(s)	483, 834
BslFI	GGGAC	3 cut(s)	397, 947, 1151
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	75, 1228
BsmFI	GGGAC	3 cut(s)	397, 947, 1151
BsnI	GGCC	4 cut(s)	165, 196, 297, 765
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	575, 1050
BspACI	CCGC	3 cut(s)	192, 510, 751
BspANI	GGCC	4 cut(s)	165, 196, 297, 765
BspCNI	CTCAG	1 cut(s)	870
BspHI	TCATGA	1 cut(s)	1209
BspLI	GGNNCC	4 cut(s)	385, 522, 564, 1027
BspMI	ACCTGC	2 cut(s)	10, 1118
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	48, 1146
BssECI	CCNNGG	5 cut(s)	197, 391, 817, 1021, 1029
BssMI	GATC	2 cut(s)	575, 1050
BssNI	GRCGYC	1 cut(s)	1185
BssT1I	CCWWGG	2 cut(s)	197, 817
Bst2UI	CCWGG	4 cut(s)	114, 393, 449, 1022
Bst4CI	ACNGT	2 cut(s)	228, 1259
Bst6I	CTCTTC	2 cut(s)	96, 121
BstACI	GRCGYC	1 cut(s)	1185
BstBAI	YACGTR	1 cut(s)	1066
BstC8I	GCNNGC	2 cut(s)	194, 597
BstDEI	CTNAG	4 cut(s)	136, 180, 237, 878
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	4 cut(s)	457, 678, 991, 1176
BstHHI	GCGC	1 cut(s)	1075
BstKTI	GATC	2 cut(s)	578, 1053
BstMAI	GTCTC	2 cut(s)	75, 1228
BstMBI	GATC	2 cut(s)	575, 1050
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 1124
BstNI	CCWGG	4 cut(s)	114, 393, 449, 1022
BstNSI	RCATGY	2 cut(s)	560, 666
BstPAI	GACNNNNGTC	1 cut(s)	939
BstSCI	CCNGG	5 cut(s)	112, 391, 447, 481, 1020
BstV1I	GCAGC	1 cut(s)	800
BstV2I	GAAGAC	1 cut(s)	635
Bsu36I	CCTNAGG	1 cut(s)	878
BsuI	GTATCC	1 cut(s)	895
BsuRI	GGCC	4 cut(s)	165, 196, 297, 765
BtsCI	GGATG	4 cut(s)	457, 678, 991, 1176
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	3 cut(s)	41, 233, 783
BveI	ACCTGC	2 cut(s)	10, 1118
Cac8I	GCNNGC	2 cut(s)	194, 597
CciI	TCATGA	1 cut(s)	1209
CfoI	GCGC	1 cut(s)	1075
Cfr13I	GGNCC	4 cut(s)	163, 194, 296, 384
CseI	GACGC	2 cut(s)	722, 1193
Csp6I	GTAC	4 cut(s)	271, 365, 1018, 1091
CviAII	CATG	6 cut(s)	70, 308, 557, 663, 1210, 1251
CviQI	GTAC	4 cut(s)	271, 365, 1018, 1091
DdeI	CTNAG	4 cut(s)	136, 180, 237, 878
DpnI	GATC	2 cut(s)	577, 1052
DpnII	GATC	2 cut(s)	575, 1050
DriI	GACNNNNNGTC	1 cut(s)	1009
EaeI	YGGCCR	1 cut(s)	763
Eam1104I	CTCTTC	2 cut(s)	96, 121
Eam1105I	GACNNNNNGTC	1 cut(s)	1009
EarI	CTCTTC	2 cut(s)	96, 121
Eco130I	CCWWGG	2 cut(s)	197, 817
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	878
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	1040
EcoRII	CCWGG	4 cut(s)	112, 391, 447, 1020
EcoT14I	CCWWGG	2 cut(s)	197, 817
ErhI	CCWWGG	2 cut(s)	197, 817
FaeI	CATG	6 cut(s)	73, 311, 560, 666, 1213, 1254
FaqI	GGGAC	3 cut(s)	397, 947, 1151
FatI	CATG	6 cut(s)	69, 307, 556, 662, 1209, 1250
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	3 cut(s)	510, 751, 814
FokI	GGATG	4 cut(s)	464, 685, 998, 1163
Fsp4HI	GCNGC	3 cut(s)	510, 751, 814
FspBI	CTAG	1 cut(s)	648
FspI	TGCGCA	1 cut(s)	1074
GlaI	GCGC	1 cut(s)	1074
GluI	GCNGC	3 cut(s)	510, 751, 814
GsaI	CCCAGC	2 cut(s)	1001, 1172
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	4 cut(s)	165, 196, 297, 765
HapII	CCGG	2 cut(s)	483, 834
HgaI	GACGC	2 cut(s)	722, 1193
HhaI	GCGC	1 cut(s)	1075
Hin1I	GRCGYC	1 cut(s)	1185
Hin1II	CATG	6 cut(s)	73, 311, 560, 666, 1213, 1254
Hin6I	GCGC	1 cut(s)	1073
HinP1I	GCGC	1 cut(s)	1073
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HinfI	GANTC	6 cut(s)	92, 502, 653, 719, 891, 923
HpaII	CCGG	2 cut(s)	483, 834
Hpy166II	GTNNAC	2 cut(s)	781, 793
Hpy188I	TCNGA	8 cut(s)	247, 464, 680, 738, 760, 918, 1030, 1039
Hpy188III	TCNNGA	7 cut(s)	371, 877, 944, 967, 1045, 1210, 1225
Hpy8I	GTNNAC	2 cut(s)	781, 793
Hpy99I	CGWCG	1 cut(s)	1187
HpyAV	CCTTC	3 cut(s)	574, 621, 629
HpyCH4III	ACNGT	2 cut(s)	228, 1259
HpyCH4IV	ACGT	2 cut(s)	273, 1065
HpyCH4V	TGCA	4 cut(s)	662, 694, 1118, 1193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 1124
HpyF3I	CTNAG	4 cut(s)	136, 180, 237, 878
HpySE526I	ACGT	2 cut(s)	273, 1065
Hsp92I	GRCGYC	1 cut(s)	1185
Hsp92II	CATG	6 cut(s)	73, 311, 560, 666, 1213, 1254
HspAI	GCGC	1 cut(s)	1073
Kzo9I	GATC	2 cut(s)	575, 1050
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	1 cut(s)	800
LweI	GCATC	5 cut(s)	48, 316, 415, 937, 1202
MaeI	CTAG	1 cut(s)	648
MaeII	ACGT	2 cut(s)	273, 1065
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	2 cut(s)	577, 1052
MboI	GATC	2 cut(s)	575, 1050
MlsI	TGGCCA	1 cut(s)	765
MluCI	AATT	7 cut(s)	107, 488, 567, 767, 1040, 1137, 1205
MluNI	TGGCCA	1 cut(s)	765
Mox20I	TGGCCA	1 cut(s)	765
MroXI	GAANNNNTTC	2 cut(s)	643, 1141
MscI	TGGCCA	1 cut(s)	765
MseI	TTAA	6 cut(s)	75, 287, 516, 618, 954, 1261
Msp20I	TGGCCA	1 cut(s)	765
MspA1I	CMGCKG	2 cut(s)	512, 1172
MspI	CCGG	2 cut(s)	483, 834
MspR9I	CCNGG	5 cut(s)	114, 393, 449, 483, 1022
MvaI	CCWGG	4 cut(s)	114, 393, 449, 1022
MwoI	GCNNNNNNNGC	2 cut(s)	171, 1124
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	2 cut(s)	575, 1050
NlaIII	CATG	6 cut(s)	73, 311, 560, 666, 1213, 1254
NlaIV	GGNNCC	4 cut(s)	385, 522, 564, 1027
NmeAIII	GCCGAG	1 cut(s)	454
NsbI	TGCGCA	1 cut(s)	1074
NspI	RCATGY	2 cut(s)	560, 666
PagI	TCATGA	1 cut(s)	1209
PciI	ACATGT	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PdmI	GAANNNNTTC	2 cut(s)	643, 1141
PfeI	GAWTC	6 cut(s)	92, 502, 653, 719, 891, 923
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	511, 752, 815
Ppu21I	YACGTR	1 cut(s)	1066
PscI	ACATGT	1 cut(s)	556
PshAI	GACNNNNGTC	1 cut(s)	939
PsiI	TTATAA	1 cut(s)	440
Psp6I	CCWGG	4 cut(s)	112, 391, 447, 1020
PspFI	CCCAGC	2 cut(s)	997, 1168
PspGI	CCWGG	4 cut(s)	112, 391, 447, 1020
PspN4I	GGNNCC	4 cut(s)	385, 522, 564, 1027
PspPI	GGNCC	4 cut(s)	163, 194, 296, 384
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
PvuII	CAGCTG	1 cut(s)	1172
RsaI	GTAC	4 cut(s)	272, 366, 1019, 1092
RsaNI	GTAC	4 cut(s)	271, 365, 1018, 1091
SaqAI	TTAA	6 cut(s)	75, 287, 516, 618, 954, 1261
SatI	GCNGC	3 cut(s)	510, 751, 814
Sau3AI	GATC	2 cut(s)	575, 1050
Sau96I	GGNCC	4 cut(s)	163, 194, 296, 384
ScrFI	CCNGG	5 cut(s)	114, 393, 449, 483, 1022
SfaNI	GCATC	5 cut(s)	48, 316, 415, 937, 1202
SinI	GGWCC	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	784
SmoI	CTYRAG	1 cut(s)	784
Sse9I	AATT	7 cut(s)	107, 488, 567, 767, 1040, 1137, 1205
SsiI	CCGC	3 cut(s)	192, 510, 751
SspMI	CTAG	1 cut(s)	648
StyD4I	CCNGG	5 cut(s)	112, 391, 447, 481, 1020
StyI	CCWWGG	2 cut(s)	197, 817
TaaI	ACNGT	2 cut(s)	228, 1259
TaiI	ACGT	2 cut(s)	276, 1068
TaqI	TCGA	3 cut(s)	578, 1044, 1226
TaqII	GACCGA	1 cut(s)	935
TasI	AATT	7 cut(s)	107, 488, 567, 767, 1040, 1137, 1205
TatI	WGTACW	1 cut(s)	364
TauI	GCSGC	2 cut(s)	512, 753
TfiI	GAWTC	6 cut(s)	92, 502, 653, 719, 891, 923
Tru1I	TTAA	6 cut(s)	75, 287, 516, 618, 954, 1261
Tru9I	TTAA	6 cut(s)	75, 287, 516, 618, 954, 1261
TscAI	CASTG	3 cut(s)	48, 233, 783
TseI	GCWGC	1 cut(s)	813
TspDTI	ATGAA	4 cut(s)	638, 843, 1198, 1239
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	3 cut(s)	48, 233, 783
VpaK11BI	GGWCC	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	3 cut(s)	107, 1040, 1205
XceI	RCATGY	2 cut(s)	560, 666
XmnI	GAANNNNTTC	2 cut(s)	643, 1141
XspI	CTAG	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.