Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Forward (+)

5951267 .. 5953723

Gene Structure 2457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGTGTGGATTTGAGGCAGGTAGTGGCAGGAGTACTGACACTGGCAATGTTTGTGATGCTTGGGAACATGATTAAGAGAGACCATTTTGATTCTGTTGAAGAGAAATTTCCTGGAGGAGGAGGAAGAGATACCTTGGAAACTTCCGAGTATTCAAAGGAGGGCCTCGGTAGCTTCGCTAAGAAGAATGGCGGACCTTGGAAAGATGATGGCGAGGAGCTAAAACAGTGTTGGTCTAAGCCATCTGCAGATGATGTAGAGCAGACGGAGGGGTATGTCCTGTTCTCATTAACAAATGGCCCCGAATACCATGTTTCACAGGTCGCGGATGCTGTTGTCGTGGCAAGGTATCTAGGGGCAACACTTGTACTTCCTGATATTAGAGGGACCAAACCAGGGGATGAGAGGAACCTTGATGAGATATATGATGTCGAGAAGTTTATAAGTAGCCTGGATGGTGTGGTCAAAGTAGTAAAAAAACGACCTGGTAAATTATCCACAAGGAATCTTGCCGCTGTTAAGGTTCCCAATCGGGTTACAGAAGATTACATTGTTGAACACGTGGAACCAATTTATAGATCAAAGGGCAACATAAGGTTGGCTACTTACTTTCCTTCAGTTAATATGAAGAAGACAGAAGGAAAGAGTTCTAGCGATTCAGTTGCATGTTTGGGAATGTTTGGAACATTAGAGTTGCAACAAGAGATCAGTGAAGTGGTCGAATCAATGGTTGAGCGTCTGAAAACTTTGAGCCGCAAGTCAGATGGCCAATTTGTAGCGGTGGACTTGAGGGTTGACATATTGGAGAAGAACGGTTGCCAAGGAGGAGATGAAAGCGGAACAAAAAGTTGCTATAATGCGCAAGAGATTGCTTTATTCTTGAGGAAACTTGGATTCGCAAAGGATACCACAATCTATTTGACCGAATCAAAATGGGACAGCAGTCTTGATGCTCTGAAAGACATCTTCCCGAAAACGTATATCAAGGATGGCATTATCCCAGCGGACAAGAAATCAAAGTACCTGGATTCTGAGGGGTCTGAATTCGAGAAGATCATTGACTTCTACGTGTGCGCGCAGAGTGATGTATTTGTACCAGCCATTTCAGGTTTGTTCTATGCAAATGTGGCAGGTAAGAGAATCGCGTCCAGTAAAACTCAAATACTTGTCCCAGCTGACATCCCCGGTGCCTCTGCATCTCCCTCCAAATTTATCACACATTATGTCTCGAAGAAGAACCATTTGGCTTATGCGTGCTACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

422

Amino Acids

46.36

Weight (kDa)

5.76

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
Acc16I	TGCGCA	1 cut(s)	861
Acc36I	ACCTGC	2 cut(s)	10, 1121
AccB1I	GGYRCC	1 cut(s)	1187
AccII	CGCG	3 cut(s)	326, 1076, 1145
AciI	CCGC	7 cut(s)	192, 326, 513, 754, 779, 837, 1004
AcoI	YGGCCR	1 cut(s)	766
AcsI	RAATTY	3 cut(s)	107, 1043, 1208
AcuI	CTGAAG	1 cut(s)	600
AcvI	CACGTG	1 cut(s)	562
AfaI	GTAC	4 cut(s)	36, 369, 1022, 1095
AfiI	CCNNNNNNNGG	2 cut(s)	119, 396
AflIII	ACRYGT	2 cut(s)	559, 1068
AgsI	TTSAA	3 cut(s)	101, 156, 557
AjnI	CCWGG	5 cut(s)	112, 394, 450, 484, 1023
AjuI	GAANNNNNNNTTGG	2 cut(s)	1226, 1258
AluBI	AGCT	3 cut(s)	174, 220, 1175
AluI	AGCT	3 cut(s)	174, 220, 1175
Alw26I	GTCTC	2 cut(s)	75, 1231
AoxI	GGCC	3 cut(s)	163, 298, 766
ApoI	RAATTY	3 cut(s)	107, 1043, 1208
Asp700I	GAANNNNTTC	1 cut(s)	646
AspLEI	GCGC	3 cut(s)	862, 1076, 1078
AspS9I	GGNCC	4 cut(s)	163, 194, 299, 387
AsuC2I	CCSGG	1 cut(s)	1185
AvaII	GGWCC	2 cut(s)	194, 387
BalI	TGGCCA	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	1187
BbrPI	CACGTG	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	638
BccI	CCATC	5 cut(s)	203, 250, 449, 758, 983
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	5 cut(s)	114, 396, 452, 486, 1025
BciVI	GTATCC	1 cut(s)	898
BcnI	CCSGG	1 cut(s)	1185
BcoDI	GTCTC	2 cut(s)	75, 1231
BfaI	CTAG	2 cut(s)	353, 651
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	2 cut(s)	10, 1121
BfuI	GTATCC	1 cut(s)	898
BisI	GCNGC	2 cut(s)	513, 754
BlsI	GCNGC	2 cut(s)	514, 755
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	6 cut(s)	114, 396, 452, 486, 1025, 1185
Bme18I	GGWCC	2 cut(s)	194, 387
BmgT120I	GGNCC	4 cut(s)	163, 194, 299, 387
BmiI	GGNNCC	6 cut(s)	301, 388, 410, 525, 567, 1189
BmrFI	CCNGG	6 cut(s)	114, 396, 452, 486, 1025, 1185
BmsI	GCATC	4 cut(s)	48, 319, 940, 1205
BoxI	GACNNNNGTC	1 cut(s)	942
BpiI	GAAGAC	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	808, 901
BpuMI	CCSGG	1 cut(s)	1185
BsaAI	YACGTR	2 cut(s)	562, 1069
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	6 cut(s)	135, 166, 197, 395, 820, 1183
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 396
Bse1I	ACTGG	2 cut(s)	48, 1149
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	5 cut(s)	114, 396, 452, 486, 1025
BseDI	CCNNGG	6 cut(s)	135, 166, 197, 395, 820, 1183
BseGI	GGATG	5 cut(s)	334, 406, 460, 994, 1179
BseLI	CCNNNNNNNGG	2 cut(s)	119, 396
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	1023
BseNI	ACTGG	2 cut(s)	48, 1149
BsePI	GCGCGC	1 cut(s)	1074
BseRI	GAGGAG	4 cut(s)	132, 135, 230, 840
BseYI	CCCAGC	2 cut(s)	1000, 1171
Bsh1236I	CGCG	3 cut(s)	326, 1076, 1145
BshFI	GGCC	3 cut(s)	165, 300, 768
BshNI	GGYRCC	1 cut(s)	1187
BsiSI	CCGG	1 cut(s)	1185
BslFI	GGGAC	3 cut(s)	400, 950, 1154
BslI	CCNNNNNNNGG	2 cut(s)	119, 396
BsmAI	GTCTC	2 cut(s)	75, 1231
BsmFI	GGGAC	3 cut(s)	400, 950, 1154
BsnI	GGCC	3 cut(s)	165, 300, 768
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	578, 705, 1053
BspACI	CCGC	7 cut(s)	192, 326, 513, 754, 779, 837, 1004
BspANI	GGCC	3 cut(s)	165, 300, 768
BspCNI	CTCAG	1 cut(s)	1024
BspFNI	CGCG	3 cut(s)	326, 1076, 1145
BspLI	GGNNCC	6 cut(s)	301, 388, 410, 525, 567, 1189
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	2 cut(s)	10, 1121
BspT107I	GGYRCC	1 cut(s)	1187
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	48, 1149
BssECI	CCNNGG	6 cut(s)	135, 166, 197, 395, 820, 1183
BssHII	GCGCGC	1 cut(s)	1074
BssMI	GATC	3 cut(s)	578, 705, 1053
BssT1I	CCWWGG	3 cut(s)	135, 197, 820
Bst2UI	CCWGG	5 cut(s)	114, 396, 452, 486, 1025
Bst4CI	ACNGT	2 cut(s)	228, 815
Bst6I	CTCTTC	2 cut(s)	96, 121
BstBAI	YACGTR	2 cut(s)	562, 1069
BstC8I	GCNNGC	2 cut(s)	1076, 1255
BstDEI	CTNAG	3 cut(s)	180, 237, 1032
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	5 cut(s)	334, 406, 460, 994, 1179
BstFNI	CGCG	3 cut(s)	326, 1076, 1145
BstHHI	GCGC	3 cut(s)	862, 1076, 1078
BstKTI	GATC	3 cut(s)	581, 708, 1056
BstMAI	GTCTC	2 cut(s)	75, 1231
BstMBI	GATC	3 cut(s)	578, 705, 1053
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 1127
BstNI	CCWGG	5 cut(s)	114, 396, 452, 486, 1025
BstNSI	RCATGY	1 cut(s)	669
BstPAI	GACNNNNGTC	1 cut(s)	942
BstSCI	CCNGG	6 cut(s)	112, 394, 450, 484, 1023, 1183
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	3 cut(s)	326, 1076, 1145
BstV2I	GAAGAC	1 cut(s)	638
BsuI	GTATCC	1 cut(s)	898
BsuRI	GGCC	3 cut(s)	165, 300, 768
BtsCI	GGATG	5 cut(s)	334, 406, 460, 994, 1179
BtsIMutI	CAGTG	3 cut(s)	41, 233, 715
BveI	ACCTGC	2 cut(s)	10, 1121
Cac8I	GCNNGC	2 cut(s)	1076, 1255
CfoI	GCGC	3 cut(s)	862, 1076, 1078
Cfr13I	GGNCC	4 cut(s)	163, 194, 299, 387
CseI	GACGC	2 cut(s)	725, 1134
CsiI	ACCWGGT	1 cut(s)	484
Csp6I	GTAC	4 cut(s)	35, 368, 1021, 1094
CviAII	CATG	3 cut(s)	70, 311, 666
CviQI	GTAC	4 cut(s)	35, 368, 1021, 1094
DdeI	CTNAG	3 cut(s)	180, 237, 1032
DpnI	GATC	3 cut(s)	580, 707, 1055
DpnII	GATC	3 cut(s)	578, 705, 1053
EaeI	YGGCCR	1 cut(s)	766
Eam1104I	CTCTTC	2 cut(s)	96, 121
EarI	CTCTTC	2 cut(s)	96, 121
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	3 cut(s)	135, 197, 820
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	194, 387
Eco57I	CTGAAG	1 cut(s)	600
Eco72I	CACGTG	1 cut(s)	562
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	1043
EcoRII	CCWGG	5 cut(s)	112, 394, 450, 484, 1023
EcoT14I	CCWWGG	3 cut(s)	135, 197, 820
ErhI	CCWWGG	3 cut(s)	135, 197, 820
FaeI	CATG	3 cut(s)	73, 314, 669
FaqI	GGGAC	3 cut(s)	400, 950, 1154
FatI	CATG	3 cut(s)	69, 310, 665
Fnu4HI	GCNGC	2 cut(s)	513, 754
FokI	GGATG	5 cut(s)	341, 413, 467, 1001, 1166
Fsp4HI	GCNGC	2 cut(s)	513, 754
FspBI	CTAG	2 cut(s)	353, 651
FspI	TGCGCA	1 cut(s)	861
GlaI	GCGC	3 cut(s)	861, 1075, 1077
GluI	GCNGC	2 cut(s)	513, 754
GsaI	CCCAGC	2 cut(s)	1004, 1175
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	165, 300, 768
HapII	CCGG	1 cut(s)	1185
HgaI	GACGC	2 cut(s)	725, 1134
HhaI	GCGC	3 cut(s)	862, 1076, 1078
Hin1II	CATG	3 cut(s)	73, 314, 669
Hin6I	GCGC	3 cut(s)	860, 1074, 1076
HinP1I	GCGC	3 cut(s)	860, 1074, 1076
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	8 cut(s)	92, 505, 656, 722, 894, 926, 1028, 1140
HpaII	CCGG	1 cut(s)	1185
Hpy166II	GTNNAC	2 cut(s)	784, 796
Hpy188I	TCNGA	6 cut(s)	148, 741, 763, 957, 1033, 1042
Hpy188III	TCNNGA	7 cut(s)	374, 433, 880, 947, 970, 1048, 1228
Hpy8I	GTNNAC	2 cut(s)	784, 796
HpyAV	CCTTC	2 cut(s)	624, 632
HpyCH4III	ACNGT	2 cut(s)	228, 815
HpyCH4IV	ACGT	3 cut(s)	561, 977, 1068
HpyCH4V	TGCA	5 cut(s)	248, 665, 697, 1121, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 1127
HpyF3I	CTNAG	3 cut(s)	180, 237, 1032
HpySE526I	ACGT	3 cut(s)	561, 977, 1068
Hsp92II	CATG	3 cut(s)	73, 314, 669
HspAI	GCGC	3 cut(s)	860, 1074, 1076
Kzo9I	GATC	3 cut(s)	578, 705, 1053
LmnI	GCTCC	1 cut(s)	217
LweI	GCATC	4 cut(s)	48, 319, 940, 1205
MabI	ACCWGGT	1 cut(s)	484
MaeI	CTAG	2 cut(s)	353, 651
MaeII	ACGT	3 cut(s)	561, 977, 1068
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	3 cut(s)	580, 707, 1055
MboI	GATC	3 cut(s)	578, 705, 1053
MlsI	TGGCCA	1 cut(s)	768
MluCI	AATT	6 cut(s)	107, 491, 570, 770, 1043, 1208
MluNI	TGGCCA	1 cut(s)	768
Mox20I	TGGCCA	1 cut(s)	768
MroXI	GAANNNNTTC	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	768
MseI	TTAA	4 cut(s)	75, 290, 519, 621
Msp20I	TGGCCA	1 cut(s)	768
MspA1I	CMGCKG	3 cut(s)	515, 1004, 1175
MspI	CCGG	1 cut(s)	1185
MspR9I	CCNGG	6 cut(s)	114, 396, 452, 486, 1025, 1185
MvaI	CCWGG	5 cut(s)	114, 396, 452, 486, 1025
MvnI	CGCG	3 cut(s)	326, 1076, 1145
MwoI	GCNNNNNNNGC	2 cut(s)	171, 1127
NciI	CCSGG	1 cut(s)	1185
NdeII	GATC	3 cut(s)	578, 705, 1053
NlaIII	CATG	3 cut(s)	73, 314, 669
NlaIV	GGNNCC	6 cut(s)	301, 388, 410, 525, 567, 1189
NsbI	TGCGCA	1 cut(s)	861
NspI	RCATGY	1 cut(s)	669
PauI	GCGCGC	1 cut(s)	1074
PdmI	GAANNNNTTC	1 cut(s)	646
PfeI	GAWTC	8 cut(s)	92, 505, 656, 722, 894, 926, 1028, 1140
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	514, 755
PmaCI	CACGTG	1 cut(s)	562
PmlI	CACGTG	1 cut(s)	562
Ppu21I	YACGTR	2 cut(s)	562, 1069
PshAI	GACNNNNGTC	1 cut(s)	942
PsiI	TTATAA	1 cut(s)	443
Psp6I	CCWGG	5 cut(s)	112, 394, 450, 484, 1023
PspCI	CACGTG	1 cut(s)	562
PspFI	CCCAGC	2 cut(s)	1000, 1171
PspGI	CCWGG	5 cut(s)	112, 394, 450, 484, 1023
PspN4I	GGNNCC	6 cut(s)	301, 388, 410, 525, 567, 1189
PspPI	GGNCC	4 cut(s)	163, 194, 299, 387
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PstI	CTGCAG	1 cut(s)	250
PteI	GCGCGC	1 cut(s)	1074
PvuII	CAGCTG	1 cut(s)	1175
RsaI	GTAC	4 cut(s)	36, 369, 1022, 1095
RsaNI	GTAC	4 cut(s)	35, 368, 1021, 1094
SaqAI	TTAA	4 cut(s)	75, 290, 519, 621
SatI	GCNGC	2 cut(s)	513, 754
Sau3AI	GATC	3 cut(s)	578, 705, 1053
Sau96I	GGNCC	4 cut(s)	163, 194, 299, 387
ScaI	AGTACT	1 cut(s)	36
ScrFI	CCNGG	6 cut(s)	114, 396, 452, 486, 1025, 1185
SexAI	ACCWGGT	1 cut(s)	484
SfaNI	GCATC	4 cut(s)	48, 319, 940, 1205
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	2 cut(s)	194, 387
SmlI	CTYRAG	2 cut(s)	787, 880
SmoI	CTYRAG	2 cut(s)	787, 880
Sse9I	AATT	6 cut(s)	107, 491, 570, 770, 1043, 1208
SsiI	CCGC	7 cut(s)	192, 326, 513, 754, 779, 837, 1004
SspMI	CTAG	2 cut(s)	353, 651
StyD4I	CCNGG	6 cut(s)	112, 394, 450, 484, 1023, 1183
StyI	CCWWGG	3 cut(s)	135, 197, 820
TaaI	ACNGT	2 cut(s)	228, 815
TaiI	ACGT	3 cut(s)	564, 980, 1071
TaqI	TCGA	4 cut(s)	432, 720, 1047, 1229
TaqII	GACCGA	1 cut(s)	938
TasI	AATT	6 cut(s)	107, 491, 570, 770, 1043, 1208
TatI	WGTACW	2 cut(s)	34, 367
TauI	GCSGC	2 cut(s)	515, 756
TfiI	GAWTC	8 cut(s)	92, 505, 656, 722, 894, 926, 1028, 1140
Tru1I	TTAA	4 cut(s)	75, 290, 519, 621
Tru9I	TTAA	4 cut(s)	75, 290, 519, 621
TscAI	CASTG	3 cut(s)	48, 233, 715
TspDTI	ATGAA	2 cut(s)	641, 846
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	48, 233, 715
VpaK11BI	GGWCC	2 cut(s)	194, 387
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	3 cut(s)	107, 1043, 1208
XceI	RCATGY	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	646
XspI	CTAG	2 cut(s)	353, 651
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.