Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Reverse (-)

62525604 .. 62529141

Gene Structure 3538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG461900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGTGTGGATTTGAGGCAGGTAGTGGCAGGGATACTGACAGTGACAATGTTTGTGATGCTTGGGCATATGATCAAAAGAGACCATTTTGATTATGTTGAAGAGAAATTTCCTGGAGAAGGAAGAGATGCCTTAGAGAATGCCAAGATTTCAAAGGAGGGCCTTTTTTCCCTTGCTAAGAAGGGTGGGAATTTTAATGATGATGGCGAAGAGCTAAAACCATGTTGGTCTAAGCCAGCTTTGGATGATGTAGAGCAGACGGAGGGGTATGTCCTTTTCTCGTTAACAAATGGTCCTGAATACCATGTTTCACAGATTGCTGATGCAGTTGTGGTGGCAAGGTATCTTGGGGCAACTCTTGTAGTTCCTGACATTAGAGGGAGCAAACCAGGGGATGAAAGGAGCTTTGAAGAGATTTATGATGTCGAGAAGTTTATTATTAGCCTGGACGGTGTTGTTAGAGTAGCAAAAGAACGACCTGGTAAACTATCATCAAGGAATCTTGCTGCTGTGAAGGTCCCTAATCGGGTTACAGAAGATTACATTGTAGAACATGTGGAACCAATTTACAGATCCAAGGGCAACATAAGGCTGGCGACTTACTTTCCCTCAGTAAATATGAAGAAGACAGAAAAAAAGAGTGCTAGTGATTCGGTTGCATGTTTAGGAATGTTTGGAACTTTAGAGTTGCAACCAGAAATTAGTGAAGTAGTTGATTCAACGGTTGAGCGCCTGAGAACTTTGAGTCGCAAGACAAATGGCCAATTTATAGCAGTGGACTTGAGGGTTGAGATGCTGGAGCAGAATGGTTGCCAAGGAGATGAAAGTGGAACAAAAAGTTGTTACAATCCGCAAGAGATAGCTTTATTTCTGAGGAAAATTGGATTTGGTAAGGATACTACCATTTATGTAACTGAATCAAGATGGGACAGCAGCCTTGATAATCTGAAAGATATCTTTCCTAAAACTTACGTAAAGGTACATGCTTTTTCTGCTCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

334

Amino Acids

37.28

Weight (kDa)

5.48

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	103 - 327	1e-20	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	10
AciI	CCGC	1 cut(s)	851
AclWI	GGATC	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	2 cut(s)	107, 190
AfaI	GTAC	1 cut(s)	981
AfiI	CCNNNNNNNGG	2 cut(s)	119, 526
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	4 cut(s)	101, 153, 410, 720
AjnI	CCWGG	4 cut(s)	112, 388, 444, 478
AluBI	AGCT	4 cut(s)	214, 239, 405, 863
AluI	AGCT	4 cut(s)	214, 239, 405, 863
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	567
AoxI	GGCC	2 cut(s)	160, 760
ApeKI	GCWGC	2 cut(s)	506, 933
ApoI	RAATTY	2 cut(s)	107, 190
AspLEI	GCGC	1 cut(s)	732
AspS9I	GGNCC	3 cut(s)	160, 293, 517
AvaII	GGWCC	2 cut(s)	293, 517
BalI	TGGCCA	1 cut(s)	762
BbsI	GAAGAC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	493, 945
BccI	CCATC	2 cut(s)	197, 918
BciT130I	CCWGG	4 cut(s)	114, 390, 446, 480
BciVI	GTATCC	2 cut(s)	27, 889
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	733
BfuAI	ACCTGC	1 cut(s)	10
BfuI	GTATCC	2 cut(s)	27, 889
BisI	GCNGC	2 cut(s)	507, 934
BlsI	GCNGC	2 cut(s)	508, 935
Bme1390I	CCNGG	4 cut(s)	114, 390, 446, 480
Bme18I	GGWCC	2 cut(s)	293, 517
BmgT120I	GGNCC	3 cut(s)	160, 293, 517
BmiI	GGNNCC	2 cut(s)	519, 561
BmrFI	CCNGG	4 cut(s)	114, 390, 446, 480
BmsI	GCATC	4 cut(s)	48, 118, 313, 783
BpiI	GAAGAC	1 cut(s)	632
BpmI	CTGGAG	2 cut(s)	135, 818
BpuEI	CTTGAG	1 cut(s)	802
BsaAI	YACGTR	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	389, 576, 814
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 526
BseBI	CCWGG	4 cut(s)	114, 390, 446, 480
BseDI	CCNNGG	3 cut(s)	389, 576, 814
BseGI	GGATG	2 cut(s)	250, 400
BseLI	CCNNNNNNNGG	2 cut(s)	119, 526
BseMII	CTCAG	3 cut(s)	624, 725, 863
BseXI	GCAGC	2 cut(s)	493, 945
BshFI	GGCC	2 cut(s)	162, 762
BslFI	GGGAC	2 cut(s)	503, 941
BslI	CCNNNNNNNGG	2 cut(s)	119, 526
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	503, 941
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	162, 762
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	72, 572
BspACI	CCGC	1 cut(s)	851
BspANI	GGCC	2 cut(s)	162, 762
BspCNI	CTCAG	3 cut(s)	623, 726, 864
BspLI	GGNNCC	2 cut(s)	519, 561
BspMI	ACCTGC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	567
BspQI	GCTCTTC	2 cut(s)	204, 1002
BspTNI	GGTCTC	1 cut(s)	75
BssECI	CCNNGG	3 cut(s)	389, 576, 814
BssMI	GATC	2 cut(s)	72, 572
BssT1I	CCWWGG	2 cut(s)	576, 814
Bst2UI	CCWGG	4 cut(s)	114, 390, 446, 480
Bst4CI	ACNGT	3 cut(s)	43, 452, 724
Bst6I	CTCTTC	5 cut(s)	96, 118, 204, 405, 1002
BstBAI	YACGTR	1 cut(s)	973
BstC8I	GCNNGC	2 cut(s)	237, 594
BstDEI	CTNAG	6 cut(s)	133, 177, 231, 610, 734, 872
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	250, 400
BstH2I	RGCGCY	1 cut(s)	733
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	2 cut(s)	75, 575
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	72, 572
BstMWI	GCNNNNNNNGC	1 cut(s)	992
BstNI	CCWGG	4 cut(s)	114, 390, 446, 480
BstNSI	RCATGY	3 cut(s)	557, 663, 986
BstSCI	CCNGG	4 cut(s)	112, 388, 444, 478
BstSNI	TACGTA	1 cut(s)	973
BstV1I	GCAGC	2 cut(s)	493, 945
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BsuI	GTATCC	2 cut(s)	27, 889
BsuRI	GGCC	2 cut(s)	162, 762
BtsCI	GGATG	2 cut(s)	250, 400
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	2 cut(s)	48, 780
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	237, 594
CfoI	GCGC	1 cut(s)	732
Cfr13I	GGNCC	3 cut(s)	160, 293, 517
CsiI	ACCWGGT	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	980
CviAII	CATG	5 cut(s)	222, 305, 554, 660, 983
CviQI	GTAC	1 cut(s)	980
DdeI	CTNAG	6 cut(s)	133, 177, 231, 610, 734, 872
DpnI	GATC	2 cut(s)	74, 574
DpnII	GATC	2 cut(s)	72, 572
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	5 cut(s)	96, 118, 204, 405, 1002
EarI	CTCTTC	5 cut(s)	96, 118, 204, 405, 1002
Eco105I	TACGTA	1 cut(s)	973
Eco130I	CCWWGG	2 cut(s)	576, 814
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	2 cut(s)	293, 517
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoO109I	RGGNCCY	2 cut(s)	160, 517
EcoRII	CCWGG	4 cut(s)	112, 388, 444, 478
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	2 cut(s)	576, 814
ErhI	CCWWGG	2 cut(s)	576, 814
FaeI	CATG	5 cut(s)	225, 308, 557, 663, 986
FaqI	GGGAC	2 cut(s)	503, 941
FatI	CATG	5 cut(s)	221, 304, 553, 659, 982
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	507, 934
FokI	GGATG	2 cut(s)	257, 407
Fsp4HI	GCNGC	2 cut(s)	507, 934
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	2 cut(s)	507, 934
GsuI	CTGGAG	2 cut(s)	135, 818
HaeII	RGCGCY	1 cut(s)	733
HaeIII	GGCC	2 cut(s)	162, 762
HhaI	GCGC	1 cut(s)	732
Hin1II	CATG	5 cut(s)	225, 308, 557, 663, 986
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	5 cut(s)	499, 650, 716, 745, 917
HpaI	GTTAAC	1 cut(s)	285
Hpy166II	GTNNAC	3 cut(s)	285, 485, 778
Hpy188I	TCNGA	2 cut(s)	873, 948
Hpy188III	TCNNGA	4 cut(s)	296, 368, 427, 921
Hpy8I	GTNNAC	3 cut(s)	285, 485, 778
HpyAV	CCTTC	3 cut(s)	113, 175, 508
HpyCH4III	ACNGT	3 cut(s)	43, 452, 724
HpyCH4IV	ACGT	1 cut(s)	972
HpyCH4V	TGCA	3 cut(s)	326, 659, 691
HpyF10VI	GCNNNNNNNGC	1 cut(s)	992
HpyF3I	CTNAG	6 cut(s)	133, 177, 231, 610, 734, 872
HpySE526I	ACGT	1 cut(s)	972
Hsp92II	CATG	5 cut(s)	225, 308, 557, 663, 986
HspAI	GCGC	1 cut(s)	730
Ksp22I	TGATCA	1 cut(s)	72
KspAI	GTTAAC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	72, 572
LguI	GCTCTTC	2 cut(s)	204, 1002
LmnI	GCTCC	3 cut(s)	381, 402, 799
Lsp1109I	GCAGC	2 cut(s)	493, 945
LweI	GCATC	4 cut(s)	48, 118, 313, 783
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	1 cut(s)	972
MaeIII	GTNAC	4 cut(s)	43, 529, 842, 910
MalI	GATC	2 cut(s)	74, 574
MboI	GATC	2 cut(s)	72, 572
MboII	GAAGA	8 cut(s)	113, 135, 221, 422, 548, 634, 637, 989
MflI	RGATCY	1 cut(s)	572
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	6 cut(s)	107, 190, 564, 699, 764, 879
MluNI	TGGCCA	1 cut(s)	762
MlyI	GAGTC	1 cut(s)	754
MnlI	CCTC	7 cut(s)	9, 151, 256, 371, 619, 777, 867
Mox20I	TGGCCA	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	2 cut(s)	195, 284
Msp20I	TGGCCA	1 cut(s)	762
MspR9I	CCNGG	4 cut(s)	114, 390, 446, 480
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	4 cut(s)	114, 390, 446, 480
MwoI	GCNNNNNNNGC	1 cut(s)	992
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	2 cut(s)	72, 572
NlaIII	CATG	5 cut(s)	225, 308, 557, 663, 986
NlaIV	GGNNCC	2 cut(s)	519, 561
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	3 cut(s)	557, 663, 986
PciI	ACATGT	1 cut(s)	553
PciSI	GCTCTTC	2 cut(s)	204, 1002
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	4 cut(s)	499, 650, 716, 917
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	508, 935
PleI	GAGTC	1 cut(s)	753
PpsI	GAGTC	1 cut(s)	753
Ppu21I	YACGTR	1 cut(s)	973
PpuMI	RGGWCCY	1 cut(s)	517
PscI	ACATGT	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	4 cut(s)	112, 388, 444, 478
PspGI	CCWGG	4 cut(s)	112, 388, 444, 478
PspN4I	GGNNCC	2 cut(s)	519, 561
PspPI	GGNCC	3 cut(s)	160, 293, 517
PspPPI	RGGWCCY	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	1 cut(s)	981
RsaNI	GTAC	1 cut(s)	980
SapI	GCTCTTC	2 cut(s)	204, 1002
SaqAI	TTAA	2 cut(s)	195, 284
SatI	GCNGC	2 cut(s)	507, 934
Sau3AI	GATC	2 cut(s)	72, 572
Sau96I	GGNCC	3 cut(s)	160, 293, 517
SchI	GAGTC	1 cut(s)	754
ScrFI	CCNGG	4 cut(s)	114, 390, 446, 480
SexAI	ACCWGGT	1 cut(s)	478
SfaNI	GCATC	4 cut(s)	48, 118, 313, 783
SinI	GGWCC	2 cut(s)	293, 517
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
SnaBI	TACGTA	1 cut(s)	973
Sse9I	AATT	6 cut(s)	107, 190, 564, 699, 764, 879
SsiI	CCGC	1 cut(s)	851
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	4 cut(s)	112, 388, 444, 478
StyI	CCWWGG	2 cut(s)	576, 814
TaaI	ACNGT	3 cut(s)	43, 452, 724
TaiI	ACGT	1 cut(s)	975
TaqI	TCGA	1 cut(s)	426
TasI	AATT	6 cut(s)	107, 190, 564, 699, 764, 879
TfiI	GAWTC	4 cut(s)	499, 650, 716, 917
Tru1I	TTAA	2 cut(s)	195, 284
Tru9I	TTAA	2 cut(s)	195, 284
TscAI	CASTG	2 cut(s)	48, 780
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	506, 933
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	411, 635, 837
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	2 cut(s)	48, 780
VpaK11BI	GGWCC	2 cut(s)	293, 517
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	2 cut(s)	107, 190
XceI	RCATGY	3 cut(s)	557, 663, 986
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.