Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013390

Physical Location & Seq

Genomic Coordinates Forward (+)

18776033 .. 18779635

Gene Structure 3603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGGTGTGGATTTGAGGCAGGTAGTGGCAGGGATACTGACAGTGACAATGTTTGTGATGCTTGGGCATATGATCAAAAGAGACCATTTTGATTATGTCGAAGAGAAATTTCCTGGAGAAGGAAGAGATGCCTTAGAGAAGAATGCAAAGATTTCAAAGGAGGGTCTTTTTTCCCTTGCTAAGAAGGGTGGGAATTTTAATGATGATGGCGAAGAGCTAAAACCATGTTGGTCTAAGCCAGCTTTGGATGATGTAGAGCAGACAGAGGGGTTTGTCCTTTTCTCATTAACAAACGGTCCTGAATACCATGTTTCACAGATTGCTGATGCAGTTGTGGTGGCAAGGTATCTTGGGGCAACTCTTGTAGTTCCTGACATTAGAGGGAGCAAACCAGGGGATGAAAGGAGCTTTGAAGAGATTTATGATGTTGAGAAGTTTATTCTTAGCCTGGATGGTGTTGTTAGAGTAGCAAAAGAACGACCTGGTAAACTATCATCAAGGAATCTTGCTGCTGTGAAGGTCCCTAATCGGGTTACAGAAGATTACATTGTAGAACATGTGGAACCAATTTACAGATCCAAGGGCAACATAAGGCTGGCGACTTACTTTCCCTCAGTAAATATGAAGAAGACAGAAAAAAAGAGTGCTAGTGATTCGGTTGCATGTTTAGGAATGTTTGGAACTTTAGAGTTGCAACCAGAAATTAGTGAAGTAGTTGATTCAACAGTTGAGCGCCTGAGAACTTTGAGTCGCAAGACAAATGGCCAATTTATAGCAGTGGACTTGAGGGTTGAGATGCTGGAGCAGAATGGTTGCCAAGGAGATGAAAGTGGAACAAAAAGTTGTTACAATCCGCAAGAGATCGCTTTATTTCTGAGGAAAATTGGATTTGGTAAGGATACTACCATTTATGTAACTGAATCAAGATGGGACAGCAGCCTTGATAATCTGAAAGATATCTTTCCTAAAACTTATGTAAAGGATGGCATTATCCCTGCAGACAAAAAATCAAAGTTCCTGGGTTCAGAGGGTTCTGAATTTGAAAAGATCATCGACTACTATGTATGTTCTCAGAGTGATGTATTTGTACCAGCCATCTCTGGCTTGTTCTATGCAAATGTAGCCGGCAAGAGAATTGCTTCCAGCAAAACTGAAATACTTGTGCCAGCTGACATTTCCAGCTCTTCTGCATCTGCTACCAATTTCATCACACATTATGTGTCAAAGAAGAACCATTTGGCCTATTCATGCTTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

419

Amino Acids

46.48

Weight (kDa)

5.72

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	105 - 378	5.3e-31	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51630 AT3G21190
fragaria_vesca	FvH4_6g37210
malus_domestica	MD09G1159500.v1.1 MD17G1145700.v1.1
prunus_persica	Prupe.3G018500_v2.0.a1
pyrus_communis	pycom09g07790 pycom17g13860
rosa_chinensis	RchiOBHm_Chr2g0149901
rosa_laevigata	RLG00000020453
rosa_multiflora	Rmu_sc0001899.1_g000005
rosa_roxburghii	Rroxscaffold_2G00097570
rosa_rugosa	Rorug02G0417100
rosa_samantha	Rh2AG476500 Rh2BG488100 Rh2CG461900 Rh2DG497200
rosa_wichuraiana	Rw2G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	10
AciI	CCGC	1 cut(s)	854
AclWI	GGATC	1 cut(s)	570
AcoI	YGGCCR	1 cut(s)	763
AcsI	RAATTY	3 cut(s)	107, 193, 1037
AfaI	GTAC	1 cut(s)	1089
AfiI	CCNNNNNNNGG	2 cut(s)	119, 529
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	4 cut(s)	156, 413, 723, 1043
AjnI	CCWGG	5 cut(s)	112, 391, 447, 481, 1017
AjuI	GAANNNNNNNTTGG	2 cut(s)	1220, 1252
AluBI	AGCT	5 cut(s)	217, 242, 408, 1169, 1182
AluI	AGCT	5 cut(s)	217, 242, 408, 1169, 1182
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	570
AoxI	GGCC	2 cut(s)	763, 1239
ApeKI	GCWGC	2 cut(s)	509, 936
ApoI	RAATTY	3 cut(s)	107, 193, 1037
Asp700I	GAANNNNTTC	1 cut(s)	1138
AspLEI	GCGC	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	296, 520
AvaII	GGWCC	2 cut(s)	296, 520
BalI	TGGCCA	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	2 cut(s)	496, 948
BccI	CCATC	5 cut(s)	200, 446, 921, 977, 1103
BciT130I	CCWGG	5 cut(s)	114, 393, 449, 483, 1019
BciVI	GTATCC	2 cut(s)	27, 892
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	648, 1258
BfmI	CTRYAG	1 cut(s)	996
BfoI	RGCGCY	1 cut(s)	736
BfuAI	ACCTGC	1 cut(s)	10
BfuI	GTATCC	2 cut(s)	27, 892
BisI	GCNGC	2 cut(s)	510, 937
BlsI	GCNGC	2 cut(s)	511, 938
Bme1390I	CCNGG	5 cut(s)	114, 393, 449, 483, 1019
Bme18I	GGWCC	2 cut(s)	296, 520
BmgT120I	GGNCC	2 cut(s)	296, 520
BmiI	GGNNCC	2 cut(s)	522, 564
BmrFI	CCNGG	5 cut(s)	114, 393, 449, 483, 1019
BmsI	GCATC	5 cut(s)	48, 118, 316, 786, 1199
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	2 cut(s)	135, 821
BpuEI	CTTGAG	1 cut(s)	805
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	4 cut(s)	392, 579, 817, 1018
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 529
Bse118I	RCCGGY	1 cut(s)	1124
BseBI	CCWGG	5 cut(s)	114, 393, 449, 483, 1019
BseDI	CCNNGG	4 cut(s)	392, 579, 817, 1018
BseGI	GGATG	4 cut(s)	253, 403, 457, 988
BseLI	CCNNNNNNNGG	2 cut(s)	119, 529
BseMII	CTCAG	4 cut(s)	627, 728, 866, 1085
BseXI	GCAGC	2 cut(s)	496, 948
BshFI	GGCC	2 cut(s)	765, 1241
BsiSI	CCGG	1 cut(s)	1125
BslFI	GGGAC	2 cut(s)	506, 944
BslI	CCNNNNNNNGG	2 cut(s)	119, 529
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	506, 944
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	765, 1241
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	72, 575, 861, 1047
BspACI	CCGC	1 cut(s)	854
BspANI	GGCC	2 cut(s)	765, 1241
BspCNI	CTCAG	4 cut(s)	626, 729, 867, 1084
BspLI	GGNNCC	2 cut(s)	522, 564
BspMAI	CTGCAG	1 cut(s)	1000
BspMI	ACCTGC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	570
BspQI	GCTCTTC	2 cut(s)	207, 1189
BspTNI	GGTCTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	1124
BssAI	RCCGGY	1 cut(s)	1124
BssECI	CCNNGG	4 cut(s)	392, 579, 817, 1018
BssMI	GATC	4 cut(s)	72, 575, 861, 1047
BssT1I	CCWWGG	2 cut(s)	579, 817
Bst2UI	CCWGG	5 cut(s)	114, 393, 449, 483, 1019
Bst4CI	ACNGT	3 cut(s)	43, 296, 727
Bst6I	CTCTTC	5 cut(s)	96, 118, 207, 408, 1189
BstC8I	GCNNGC	4 cut(s)	240, 597, 1126, 1167
BstDEI	CTNAG	8 cut(s)	133, 180, 234, 443, 613, 737, 875, 1071
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	4 cut(s)	253, 403, 457, 988
BstH2I	RGCGCY	1 cut(s)	736
BstHHI	GCGC	1 cut(s)	735
BstKTI	GATC	4 cut(s)	75, 578, 864, 1050
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	4 cut(s)	72, 575, 861, 1047
BstMWI	GCNNNNNNNGC	1 cut(s)	1121
BstNI	CCWGG	5 cut(s)	114, 393, 449, 483, 1019
BstNSI	RCATGY	2 cut(s)	560, 666
BstSCI	CCNGG	5 cut(s)	112, 391, 447, 481, 1017
BstSFI	CTRYAG	1 cut(s)	996
BstV1I	GCAGC	2 cut(s)	496, 948
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	575
BsuI	GTATCC	2 cut(s)	27, 892
BsuRI	GGCC	2 cut(s)	765, 1241
BtsCI	GGATG	4 cut(s)	253, 403, 457, 988
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	2 cut(s)	48, 783
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	4 cut(s)	240, 597, 1126, 1167
CfoI	GCGC	1 cut(s)	735
Cfr10I	RCCGGY	1 cut(s)	1124
Cfr13I	GGNCC	2 cut(s)	296, 520
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	1088
CviAII	CATG	5 cut(s)	225, 308, 557, 663, 1248
CviQI	GTAC	1 cut(s)	1088
DdeI	CTNAG	8 cut(s)	133, 180, 234, 443, 613, 737, 875, 1071
DpnI	GATC	4 cut(s)	74, 577, 863, 1049
DpnII	GATC	4 cut(s)	72, 575, 861, 1047
EaeI	YGGCCR	1 cut(s)	763
Eam1104I	CTCTTC	5 cut(s)	96, 118, 207, 408, 1189
EarI	CTCTTC	5 cut(s)	96, 118, 207, 408, 1189
Eco130I	CCWWGG	2 cut(s)	579, 817
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	2 cut(s)	296, 520
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRII	CCWGG	5 cut(s)	112, 391, 447, 481, 1017
EcoRV	GATATC	1 cut(s)	958
EcoT14I	CCWWGG	2 cut(s)	579, 817
ErhI	CCWWGG	2 cut(s)	579, 817
FaeI	CATG	5 cut(s)	228, 311, 560, 666, 1251
FaqI	GGGAC	2 cut(s)	506, 944
FatI	CATG	5 cut(s)	224, 307, 556, 662, 1247
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	510, 937
FokI	GGATG	4 cut(s)	260, 410, 464, 995
Fsp4HI	GCNGC	2 cut(s)	510, 937
FspBI	CTAG	2 cut(s)	648, 1258
GlaI	GCGC	1 cut(s)	734
GluI	GCNGC	2 cut(s)	510, 937
GsuI	CTGGAG	2 cut(s)	135, 821
HaeII	RGCGCY	1 cut(s)	736
HaeIII	GGCC	2 cut(s)	765, 1241
HapII	CCGG	1 cut(s)	1125
HhaI	GCGC	1 cut(s)	735
Hin1II	CATG	5 cut(s)	228, 311, 560, 666, 1251
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HinfI	GANTC	5 cut(s)	502, 653, 719, 748, 920
HpaII	CCGG	1 cut(s)	1125
Hpy166II	GTNNAC	2 cut(s)	488, 781
Hpy188I	TCNGA	5 cut(s)	876, 951, 1027, 1036, 1074
Hpy188III	TCNNGA	3 cut(s)	299, 371, 924
Hpy8I	GTNNAC	2 cut(s)	488, 781
HpyAV	CCTTC	3 cut(s)	113, 178, 511
HpyCH4III	ACNGT	3 cut(s)	43, 296, 727
HpyCH4V	TGCA	7 cut(s)	146, 329, 662, 694, 998, 1115, 1190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1121
HpyF3I	CTNAG	8 cut(s)	133, 180, 234, 443, 613, 737, 875, 1071
Hsp92II	CATG	5 cut(s)	228, 311, 560, 666, 1251
HspAI	GCGC	1 cut(s)	733
KroI	GCCGGC	1 cut(s)	1124
KroNI	GCCGGC	1 cut(s)	1126
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	4 cut(s)	72, 575, 861, 1047
LguI	GCTCTTC	2 cut(s)	207, 1189
LmnI	GCTCC	3 cut(s)	384, 405, 802
Lsp1109I	GCAGC	2 cut(s)	496, 948
LweI	GCATC	5 cut(s)	48, 118, 316, 786, 1199
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	2 cut(s)	648, 1258
MaeIII	GTNAC	4 cut(s)	43, 532, 845, 913
MalI	GATC	4 cut(s)	74, 577, 863, 1049
MboI	GATC	4 cut(s)	72, 575, 861, 1047
MflI	RGATCY	1 cut(s)	575
MlsI	TGGCCA	1 cut(s)	765
MluCI	AATT	9 cut(s)	107, 193, 567, 702, 767, 882, 1037, 1134, 1201
MluNI	TGGCCA	1 cut(s)	765
MlyI	GAGTC	1 cut(s)	757
MnlI	CCTC	8 cut(s)	9, 154, 259, 374, 622, 780, 870, 1021
Mox20I	TGGCCA	1 cut(s)	765
MroNI	GCCGGC	1 cut(s)	1124
MroXI	GAANNNNTTC	1 cut(s)	1138
MscI	TGGCCA	1 cut(s)	765
MseI	TTAA	2 cut(s)	198, 287
Msp20I	TGGCCA	1 cut(s)	765
MspA1I	CMGCKG	1 cut(s)	1169
MspI	CCGG	1 cut(s)	1125
MspR9I	CCNGG	5 cut(s)	114, 393, 449, 483, 1019
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	5 cut(s)	114, 393, 449, 483, 1019
MwoI	GCNNNNNNNGC	1 cut(s)	1121
NaeI	GCCGGC	1 cut(s)	1126
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	4 cut(s)	72, 575, 861, 1047
NgoMIV	GCCGGC	1 cut(s)	1124
NlaIII	CATG	5 cut(s)	228, 311, 560, 666, 1251
NlaIV	GGNNCC	2 cut(s)	522, 564
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	2 cut(s)	560, 666
PciI	ACATGT	1 cut(s)	556
PciSI	GCTCTTC	2 cut(s)	207, 1189
PctI	GAATGC	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	1126
PdmI	GAANNNNTTC	1 cut(s)	1138
PfeI	GAWTC	4 cut(s)	502, 653, 719, 920
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	511, 938
PleI	GAGTC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	756
PpuMI	RGGWCCY	1 cut(s)	520
PscI	ACATGT	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	5 cut(s)	112, 391, 447, 481, 1017
PspGI	CCWGG	5 cut(s)	112, 391, 447, 481, 1017
PspN4I	GGNNCC	2 cut(s)	522, 564
PspPI	GGNCC	2 cut(s)	296, 520
PspPPI	RGGWCCY	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	1000
PsuI	RGATCY	1 cut(s)	575
PvuII	CAGCTG	1 cut(s)	1169
RsaI	GTAC	1 cut(s)	1089
RsaNI	GTAC	1 cut(s)	1088
SapI	GCTCTTC	2 cut(s)	207, 1189
SaqAI	TTAA	2 cut(s)	198, 287
SatI	GCNGC	2 cut(s)	510, 937
Sau3AI	GATC	4 cut(s)	72, 575, 861, 1047
Sau96I	GGNCC	2 cut(s)	296, 520
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	5 cut(s)	114, 393, 449, 483, 1019
SetI	ASST	9 cut(s)	24, 219, 244, 347, 410, 484, 522, 1171, 1184
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	5 cut(s)	48, 118, 316, 786, 1199
SfcI	CTRYAG	1 cut(s)	996
SinI	GGWCC	2 cut(s)	296, 520
SmlI	CTYRAG	1 cut(s)	784
SmoI	CTYRAG	1 cut(s)	784
Sse9I	AATT	9 cut(s)	107, 193, 567, 702, 767, 882, 1037, 1134, 1201
SsiI	CCGC	1 cut(s)	854
SspMI	CTAG	2 cut(s)	648, 1258
StyD4I	CCNGG	5 cut(s)	112, 391, 447, 481, 1017
StyI	CCWWGG	2 cut(s)	579, 817
TaaI	ACNGT	3 cut(s)	43, 296, 727
TaqI	TCGA	2 cut(s)	99, 1053
TasI	AATT	9 cut(s)	107, 193, 567, 702, 767, 882, 1037, 1134, 1201
TfiI	GAWTC	4 cut(s)	502, 653, 719, 920
Tru1I	TTAA	2 cut(s)	198, 287
Tru9I	TTAA	2 cut(s)	198, 287
TscAI	CASTG	2 cut(s)	48, 783
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	509, 936
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	5 cut(s)	414, 638, 840, 1195, 1236
TspRI	CASTG	2 cut(s)	48, 783
VpaK11BI	GGWCC	2 cut(s)	296, 520
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	3 cut(s)	107, 193, 1037
XceI	RCATGY	2 cut(s)	560, 666
XmnI	GAANNNNTTC	1 cut(s)	1138
XspI	CTAG	2 cut(s)	648, 1258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.