Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006035

Physical Location & Seq

Genomic Coordinates Forward (+)

19188799 .. 19191372

Gene Structure 2574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCGAGATTCAGAGACAGGACGGAGGATTTCAAGGATTCTGTTCGGAATTCCGCTGTTTCGATAGGTTATAATGAGTCTAAAGTGGCATCAACAATGGCGTCTTTTATTATACATAAGCCAAAGGAGAGATCGCCTTTCACGAAAGCTGCTTTCAAAACGCTTGATAGCATCAAGGAGTTGGAACTGTTTATGTTGAAGCATCGAAAGGATTATGTTGATCTGCACCGGACTACAGAACAGGAAAAGGATAGTATTGAACAAGAAGTTGCTGCTTTTATTAAAGCTTGCAAAGAACAGATCGATATTCTCATAAACAGTATTAGAAATGAAGAAGCAAACTCCAAAGGATGGCTTGGCCTCCCCGCAGATAACTTCAATGCTGATTCTATAGCACACAAACATGGAGTGGTTTTGATTCTGAGTGAGAAACTTCATTCAGTCACTGCCCAGTTTGATCAGCTTAGAGCTACTCGTTTCCAAGATATTATAAACAGAGCTATGCCGAGAAGAAAACCTAAGAGGGTCATAAAGGAAGCTACCCCAATTAATACAACTCTGGGAAATTCGGAGTCCATAGAACCGGATGAAATCCAGGCCCAACCTCGTAGATTACAACAACAACAACTTCTAGACGATGAAACACAAGCCCTTCAGGTAGAGCTAAGTAATCTTTTAGATGGTGCTAGGCAGACAGAAACTAAGATGGTGGAGATGTCTGCATTAAACCACTTGATGGCAACTCATGTTCTGCAGCAAGCCCAACAGATAGAGTTTCTTTATGACCAGGCAGTTGAGGCAACAAAGAACGTGGAGCTTGGAAACAAAGAGCTTTCTCAAGCAATCCAACGAAACAGCAGCAGCAGAACCTTTCTCTTACTGTTTTTCTTCGTCCTTACTTTCTCCGTCTTGTTCTTGGATTGGTACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006888 GO:0006890 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031201 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

Syntaxin-18_N

Protein Analysis

310

Amino Acids

35.57

Weight (kDa)

6.28

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51740 AT1G51740
fragaria_vesca	FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790
malus_domestica	MD02G1196300.v1.1 MD07G1124900.v1.1
prunus_persica	Prupe.2G152400_v2.0.a1 Prupe.2G152400_v2.0.a1
pyrus_communis	pycom02g15990 pycom07g11830
rosa_chinensis	RchiOBHm_Chr1g0351821
rosa_laevigata	RLG00000028379
rosa_multiflora	Rmu_sc0001933.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303510
rosa_rugosa	Rorug01G0221900 Rorug01G0222000
rosa_samantha	Rh1AG235900 Rh1BG206400 Rh1CG220400 Rh1DG233400 Rh3BG294600
rosa_wichuraiana	Rw1G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	72, 491
AccB7I	CCANNNNNTGG	2 cut(s)	351, 736
AciI	CCGC	2 cut(s)	54, 366
AcsI	RAATTY	2 cut(s)	49, 565
AcuI	CTGAAG	1 cut(s)	638
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	926
AfiI	CCNNNNNNNGG	2 cut(s)	351, 736
AgsI	TTSAA	5 cut(s)	34, 157, 199, 260, 379
AjnI	CCWGG	2 cut(s)	594, 786
AluBI	AGCT	9 cut(s)	149, 287, 463, 470, 500, 539, 664, 817, 832
AluI	AGCT	9 cut(s)	149, 287, 463, 470, 500, 539, 664, 817, 832
Alw26I	GTCTC	1 cut(s)	9
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	358, 597
ApeKI	GCWGC	5 cut(s)	149, 272, 754, 858, 861
ApoI	RAATTY	2 cut(s)	49, 565
AseI	ATTAAT	1 cut(s)	549
AspS9I	GGNCC	1 cut(s)	598
BbvI	GCAGC	5 cut(s)	136, 259, 766, 870, 873
BccI	CCATC	4 cut(s)	345, 674, 700, 730
BciT130I	CCWGG	2 cut(s)	596, 788
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	632, 687
BfmI	CTRYAG	3 cut(s)	234, 390, 752
BisI	GCNGC	5 cut(s)	150, 273, 755, 859, 862
BlsI	GCNGC	5 cut(s)	151, 274, 756, 860, 863
Bme1390I	CCNGG	2 cut(s)	596, 788
BmgT120I	GGNCC	1 cut(s)	598
BmrFI	CCNGG	2 cut(s)	596, 788
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	3 cut(s)	98, 180, 211
BmuI	ACTGGG	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	822
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	101
BsaWI	WCCGGW	2 cut(s)	228, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 736
Bse1I	ACTGG	1 cut(s)	451
BseBI	CCWGG	2 cut(s)	596, 788
BseCI	ATCGAT	1 cut(s)	303
BseGI	GGATG	2 cut(s)	356, 592
BseLI	CCNNNNNNNGG	2 cut(s)	351, 736
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	451
BseXI	GCAGC	5 cut(s)	136, 259, 766, 870, 873
BsgI	GTGCAG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	360, 599
BshVI	ATCGAT	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	229, 584
BslI	CCNNNNNNNGG	2 cut(s)	351, 736
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	360, 599
Bsp143I	GATC	4 cut(s)	131, 220, 300, 457
BspACI	CCGC	2 cut(s)	54, 366
BspANI	GGCC	2 cut(s)	360, 599
BspCNI	CTCAG	1 cut(s)	414
BspDI	ATCGAT	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	451
BssMI	GATC	4 cut(s)	131, 220, 300, 457
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	596, 788
Bst4CI	ACNGT	4 cut(s)	189, 320, 882, 929
BstACI	GRCGYC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	289, 759
BstDEI	CTNAG	5 cut(s)	422, 464, 519, 665, 702
BstF5I	GGATG	2 cut(s)	356, 592
BstKTI	GATC	4 cut(s)	134, 223, 303, 460
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	131, 220, 300, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstNI	CCWGG	2 cut(s)	596, 788
BstSCI	CCNGG	2 cut(s)	594, 786
BstSFI	CTRYAG	3 cut(s)	234, 390, 752
BstV1I	GCAGC	5 cut(s)	136, 259, 766, 870, 873
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	360, 599
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	356, 592
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	289, 759
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	598
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	925
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviAII	CATG	2 cut(s)	404, 746
CviQI	GTAC	1 cut(s)	925
DdeI	CTNAG	5 cut(s)	422, 464, 519, 665, 702
DpnI	GATC	4 cut(s)	133, 222, 302, 459
DpnII	GATC	4 cut(s)	131, 220, 300, 457
Eco57I	CTGAAG	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	594, 786
FaeI	CATG	2 cut(s)	407, 749
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	2 cut(s)	403, 745
FauI	CCCGC	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	150, 273, 755, 859, 862
FokI	GGATG	2 cut(s)	363, 599
Fsp4HI	GCNGC	5 cut(s)	150, 273, 755, 859, 862
FspBI	CTAG	2 cut(s)	632, 687
GluI	GCNGC	5 cut(s)	150, 273, 755, 859, 862
HaeIII	GGCC	2 cut(s)	360, 599
HapII	CCGG	2 cut(s)	229, 584
HgaI	GACGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	407, 749
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	6 cut(s)	9, 38, 77, 386, 418, 572
HpaII	CCGG	2 cut(s)	229, 584
Hpy188I	TCNGA	4 cut(s)	14, 48, 423, 571
Hpy188III	TCNNGA	3 cut(s)	6, 142, 632
HpyAV	CCTTC	1 cut(s)	662
HpyCH4III	ACNGT	4 cut(s)	189, 320, 882, 929
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	4 cut(s)	226, 291, 722, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	5 cut(s)	422, 464, 519, 665, 702
HpySE526I	ACGT	1 cut(s)	810
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	407, 749
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	131, 220, 300, 457
LmnI	GCTCC	1 cut(s)	814
Lsp1109I	GCAGC	5 cut(s)	136, 259, 766, 870, 873
LweI	GCATC	3 cut(s)	98, 180, 211
MaeI	CTAG	2 cut(s)	632, 687
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	4 cut(s)	133, 222, 302, 459
MboI	GATC	4 cut(s)	131, 220, 300, 457
MboII	GAAGA	3 cut(s)	344, 522, 880
MluCI	AATT	3 cut(s)	49, 546, 565
MlyI	GAGTC	2 cut(s)	86, 581
MmeI	TCCRAC	2 cut(s)	162, 871
MnlI	CCTC	5 cut(s)	19, 371, 516, 615, 790
MseI	TTAA	4 cut(s)	282, 549, 725, 931
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	229, 584
MspR9I	CCNGG	2 cut(s)	596, 788
MvaI	CCWGG	2 cut(s)	596, 788
MwoI	GCNNNNNNNGC	1 cut(s)	797
NdeII	GATC	4 cut(s)	131, 220, 300, 457
NlaIII	CATG	2 cut(s)	407, 749
NmeAIII	GCCGAG	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PfeI	GAWTC	4 cut(s)	9, 38, 386, 418
PflMI	CCANNNNNTGG	2 cut(s)	351, 736
PkrI	GCNGC	5 cut(s)	151, 274, 756, 860, 863
PleI	GAGTC	2 cut(s)	85, 580
PpsI	GAGTC	2 cut(s)	85, 580
PshBI	ATTAAT	1 cut(s)	549
PsiI	TTATAA	2 cut(s)	72, 491
Psp6I	CCWGG	2 cut(s)	594, 786
PspGI	CCWGG	2 cut(s)	594, 786
PspPI	GGNCC	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	756
PstNI	CAGNNNCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	926
RsaNI	GTAC	1 cut(s)	925
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	4 cut(s)	282, 549, 725, 931
SatI	GCNGC	5 cut(s)	150, 273, 755, 859, 862
Sau3AI	GATC	4 cut(s)	131, 220, 300, 457
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	2 cut(s)	86, 581
ScrFI	CCNGG	2 cut(s)	596, 788
SfaNI	GCATC	3 cut(s)	98, 180, 211
SfcI	CTRYAG	3 cut(s)	234, 390, 752
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	837
SmoI	CTYRAG	1 cut(s)	837
Sse9I	AATT	3 cut(s)	49, 546, 565
SsiI	CCGC	2 cut(s)	54, 366
SspMI	CTAG	2 cut(s)	632, 687
StyD4I	CCNGG	2 cut(s)	594, 786
TaaI	ACNGT	4 cut(s)	189, 320, 882, 929
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	4 cut(s)	5, 62, 205, 303
TasI	AATT	3 cut(s)	49, 546, 565
TfiI	GAWTC	4 cut(s)	9, 38, 386, 418
Tru1I	TTAA	4 cut(s)	282, 549, 725, 931
Tru9I	TTAA	4 cut(s)	282, 549, 725, 931
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	5 cut(s)	149, 272, 754, 858, 861
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	345, 425, 603, 654
TspGWI	ACGGA	2 cut(s)	38, 895
TspRI	CASTG	1 cut(s)	451
Van91I	CCANNNNNTGG	2 cut(s)	351, 736
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	2 cut(s)	49, 565
XbaI	TCTAGA	1 cut(s)	631
XspI	CTAG	2 cut(s)	632, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.