Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006035

Physical Location & Seq

Genomic Coordinates Reverse (-)

13058955 .. 13061161

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCCAAAGTCAGGGATAGGATGGAAGATTTCAAAGATGCTGTGCGCCAATCTGCTATCTCAATGGGTTACAACGAGTCCAAATTGGCAGCGATTCTGGCGAAATTCATCATCCATGCACCCCGGCAGCGGTCGCCTTTCACCAGAGCTGCCCTCAAGACGCTCGAAAGCATTGGAGCTCTAGAACAGTTTATGTTGAAACATCGAAAGGATTATGTGGATCTGCATCGCACCACTGAACAGGAGAGGGATAGCATTGAGCATGAAGTTAGTGCTTTTATTAAAGCATGCCAAGAACAAATTGATGTTCTAAAAAATAGCATTAATGATGACGAGGCAAACTCAAAGGGCTGGCTTGGCATTAGGACTGACTACTCTAACGCTGATACTATAGCACACAAACATGGTGTGGTTTTGATTTTAAGCGAGAGACTCCATTCAGTCACGTCACGGTTTGATCAGCTAAGGGCCATACGCTTCCAAGATTCCATTAACAAAGCAACACCAAGAAGAAAACCTAAGCGGATTAAGACTTCAGCATCCACAGATACCTCAAACTCTGACAATTTGGAGCTCAGGGAACCTAATGAATTTCAACCCGAGCCTCTAACAGTGCAACAACAACTCTTGGATGATGAAACACGTGCCCTTCAGGTAGAGCTGACTAGCCTTCTAGATGCGGTTCAGGAAACTGAAACTAAGATGGTGGAAATGTCTGCGCTGAATCACCTTATGTCCACACATGTTTTGCAACAAGCCCACCAAATAGAGCAACTATACGATCAGGCAGTTGAAGCAACAAAGAACGTAGAGCTCGGCAACAAAGAGATCTCCAAAGCAATCGAGCGGAATAGCAGCAGCAGGACCTTTCTTTTGCTTTTCCTATTTGTACTTACGTTTTCGATTCTCTTTCTTGATTGGTATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006888 GO:0006890 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031201 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

Syntaxin-18_N

Protein Analysis

310

Amino Acids

35.45

Weight (kDa)

6.09

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51740 AT1G51740
fragaria_vesca	FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790
malus_domestica	MD02G1196300.v1.1 MD07G1124900.v1.1
prunus_persica	Prupe.2G152400_v2.0.a1 Prupe.2G152400_v2.0.a1
pyrus_communis	pycom02g15990 pycom07g11830
rosa_chinensis	RchiOBHm_Chr1g0351821
rosa_laevigata	RLG00000028379
rosa_multiflora	Rmu_sc0001933.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303510
rosa_rugosa	Rorug01G0221900 Rorug01G0222000
rosa_samantha	Rh1AG235900 Rh1BG206400 Rh1CG220400 Rh1DG233400 Rh3BG294600
rosa_wichuraiana	Rw1G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	847
AciI	CCGC	4 cut(s)	130, 523, 680, 847
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	104, 590
AcuI	CTGAAG	2 cut(s)	519, 635
AcvI	CACGTG	1 cut(s)	644
AfaI	GTAC	1 cut(s)	891
AfiI	CCNNNNNNNGG	2 cut(s)	12, 129
AflIII	ACRYGT	2 cut(s)	641, 742
AgsI	TTSAA	4 cut(s)	34, 199, 596, 794
AjiI	CACGTC	1 cut(s)	447
AluBI	AGCT	6 cut(s)	149, 179, 463, 574, 661, 814
AluI	AGCT	6 cut(s)	149, 179, 463, 574, 661, 814
Alw21I	GWGCWC	3 cut(s)	181, 576, 816
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	5 cut(s)	89, 127, 149, 855, 858
ApoI	RAATTY	2 cut(s)	104, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	856, 888
AseI	ATTAAT	1 cut(s)	324
AspLEI	GCGC	2 cut(s)	48, 721
AspS9I	GGNCC	2 cut(s)	468, 864
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	133, 719
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	864
BaeGI	GKGCMC	1 cut(s)	649
BanII	GRGCYC	3 cut(s)	181, 576, 816
BbrPI	CACGTG	1 cut(s)	644
Bbv12I	GWGCWC	3 cut(s)	181, 576, 816
BbvI	GCAGC	5 cut(s)	101, 136, 139, 867, 870
BccI	CCATC	2 cut(s)	16, 697
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	3 cut(s)	182, 666, 674
BfmI	CTRYAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	828
BisI	GCNGC	5 cut(s)	90, 128, 150, 856, 859
BlsI	GCNGC	5 cut(s)	91, 129, 151, 857, 860
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	864
BmeT110I	CYCGRG	1 cut(s)	599
BmgBI	CACGTC	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	468, 864
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	4 cut(s)	28, 235, 548, 667
BplI	GAGNNNNNCTC	4 cut(s)	138, 170, 326, 358
Bpu10I	CCTNAGC	3 cut(s)	464, 519, 575
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	644
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 129
Bse8I	GATNNNNATC	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	4 cut(s)	27, 111, 539, 637
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	12, 129
BseMII	CTCAG	1 cut(s)	589
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	5 cut(s)	101, 136, 139, 867, 870
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	3 cut(s)	181, 576, 816
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	12, 129
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	599
Bsp1286I	GDGCHC	4 cut(s)	181, 576, 649, 816
Bsp143I	GATC	4 cut(s)	220, 457, 781, 828
BspACI	CCGC	4 cut(s)	130, 523, 680, 847
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	588
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	847
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	4 cut(s)	220, 457, 781, 828
Bst4CI	ACNGT	3 cut(s)	189, 453, 613
BstBAI	YACGTR	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	289, 353
BstDEI	CTNAG	4 cut(s)	464, 519, 575, 699
BstF5I	GGATG	4 cut(s)	27, 111, 539, 637
BstHHI	GCGC	2 cut(s)	48, 721
BstKTI	GATC	4 cut(s)	223, 460, 784, 831
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	4 cut(s)	220, 457, 781, 828
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 133, 357, 794
BstNSI	RCATGY	2 cut(s)	291, 746
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	5 cut(s)	101, 136, 139, 867, 870
BstX2I	RGATCY	2 cut(s)	220, 828
BstYI	RGATCY	2 cut(s)	220, 828
BsuRI	GGCC	1 cut(s)	470
BtgZI	GCGATG	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	4 cut(s)	27, 111, 539, 637
BtsIMutI	CAGTG	2 cut(s)	234, 618
Cac8I	GCNNGC	2 cut(s)	289, 353
CfoI	GCGC	2 cut(s)	48, 721
Cfr13I	GGNCC	2 cut(s)	468, 864
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	890
CviAII	CATG	5 cut(s)	116, 263, 288, 404, 743
CviQI	GTAC	1 cut(s)	890
DdeI	CTNAG	4 cut(s)	464, 519, 575, 699
DpnI	GATC	4 cut(s)	222, 459, 783, 830
DpnII	GATC	4 cut(s)	220, 457, 781, 828
Ecl136II	GAGCTC	3 cut(s)	179, 574, 814
Eco24I	GRGCYC	3 cut(s)	181, 576, 816
Eco47I	GGWCC	1 cut(s)	864
Eco53kI	GAGCTC	3 cut(s)	179, 574, 814
Eco57I	CTGAAG	2 cut(s)	519, 635
Eco72I	CACGTG	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	599
EcoICRI	GAGCTC	3 cut(s)	179, 574, 814
EcoO109I	RGGNCCY	1 cut(s)	864
EcoT38I	GRGCYC	3 cut(s)	181, 576, 816
FaeI	CATG	5 cut(s)	119, 266, 291, 407, 746
FatI	CATG	5 cut(s)	115, 262, 287, 403, 742
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	90, 128, 150, 856, 859
FokI	GGATG	4 cut(s)	34, 98, 526, 644
FriOI	GRGCYC	3 cut(s)	181, 576, 816
Fsp4HI	GCNGC	5 cut(s)	90, 128, 150, 856, 859
FspBI	CTAG	3 cut(s)	182, 666, 674
GlaI	GCGC	2 cut(s)	47, 720
GluI	GCNGC	5 cut(s)	90, 128, 150, 856, 859
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	124
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	48, 721
Hin1II	CATG	5 cut(s)	119, 266, 291, 407, 746
Hin6I	GCGC	2 cut(s)	46, 719
HinP1I	GCGC	2 cut(s)	46, 719
HinfI	GANTC	6 cut(s)	77, 94, 432, 485, 724, 904
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	2 cut(s)	133, 719
Hpy166II	GTNNAC	1 cut(s)	738
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	5 cut(s)	157, 182, 674, 686, 914
Hpy8I	GTNNAC	1 cut(s)	738
HpyAV	CCTTC	2 cut(s)	659, 680
HpyCH4III	ACNGT	3 cut(s)	189, 453, 613
HpyCH4IV	ACGT	4 cut(s)	446, 643, 807, 896
HpyCH4V	TGCA	4 cut(s)	119, 226, 616, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 133, 357, 794
HpyF3I	CTNAG	4 cut(s)	464, 519, 575, 699
HpySE526I	ACGT	4 cut(s)	446, 643, 807, 896
Hsp92II	CATG	5 cut(s)	119, 266, 291, 407, 746
HspAI	GCGC	2 cut(s)	46, 719
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	220, 457, 781, 828
LmnI	GCTCC	2 cut(s)	176, 571
Lsp1109I	GCAGC	5 cut(s)	101, 136, 139, 867, 870
LweI	GCATC	4 cut(s)	28, 235, 548, 667
MaeI	CTAG	3 cut(s)	182, 666, 674
MaeII	ACGT	4 cut(s)	446, 643, 807, 896
MaeIII	GTNAC	3 cut(s)	68, 442, 447
MalI	GATC	4 cut(s)	222, 459, 783, 830
MbiI	CCGCTC	1 cut(s)	847
MboI	GATC	4 cut(s)	220, 457, 781, 828
MboII	GAAGA	2 cut(s)	38, 522
MflI	RGATCY	2 cut(s)	220, 828
MhlI	GDGCHC	4 cut(s)	181, 576, 649, 816
MluCI	AATT	5 cut(s)	83, 104, 300, 565, 590
MlyI	GAGTC	2 cut(s)	86, 426
MnlI	CCTC	5 cut(s)	164, 240, 328, 562, 615
MseI	TTAA	6 cut(s)	282, 324, 422, 492, 528, 928
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	4 cut(s)	98, 133, 357, 794
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	4 cut(s)	220, 457, 781, 828
NlaIII	CATG	5 cut(s)	119, 266, 291, 407, 746
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	795
NmuCI	GTSAC	2 cut(s)	442, 447
NspI	RCATGY	2 cut(s)	291, 746
PaeI	GCATGC	1 cut(s)	291
PciI	ACATGT	1 cut(s)	742
PfeI	GAWTC	4 cut(s)	94, 485, 724, 904
PkrI	GCNGC	5 cut(s)	91, 129, 151, 857, 860
PleI	GAGTC	2 cut(s)	85, 426
PmaCI	CACGTG	1 cut(s)	644
PmlI	CACGTG	1 cut(s)	644
PpsI	GAGTC	2 cut(s)	85, 426
Ppu21I	YACGTR	1 cut(s)	644
PpuMI	RGGWCCY	1 cut(s)	864
PscI	ACATGT	1 cut(s)	742
PshBI	ATTAAT	1 cut(s)	324
Psp124BI	GAGCTC	3 cut(s)	181, 576, 816
Psp5II	RGGWCCY	1 cut(s)	864
PspCI	CACGTG	1 cut(s)	644
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	468, 864
PspPPI	RGGWCCY	1 cut(s)	864
PsuI	RGATCY	2 cut(s)	220, 828
RsaI	GTAC	1 cut(s)	891
RsaNI	GTAC	1 cut(s)	890
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	3 cut(s)	181, 576, 816
SaqAI	TTAA	6 cut(s)	282, 324, 422, 492, 528, 928
SatI	GCNGC	5 cut(s)	90, 128, 150, 856, 859
Sau3AI	GATC	4 cut(s)	220, 457, 781, 828
Sau96I	GGNCC	2 cut(s)	468, 864
SchI	GAGTC	2 cut(s)	86, 426
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	4 cut(s)	181, 576, 649, 816
SfaNI	GCATC	4 cut(s)	28, 235, 548, 667
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	864
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	291
Sse9I	AATT	5 cut(s)	83, 104, 300, 565, 590
SsiI	CCGC	4 cut(s)	130, 523, 680, 847
SspMI	CTAG	3 cut(s)	182, 666, 674
SstI	GAGCTC	3 cut(s)	181, 576, 816
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	3 cut(s)	189, 453, 613
TaiI	ACGT	4 cut(s)	449, 646, 810, 899
TaqI	TCGA	4 cut(s)	165, 205, 843, 902
TasI	AATT	5 cut(s)	83, 104, 300, 565, 590
TatI	WGTACW	1 cut(s)	889
TfiI	GAWTC	4 cut(s)	94, 485, 724, 904
Tru1I	TTAA	6 cut(s)	282, 324, 422, 492, 528, 928
Tru9I	TTAA	6 cut(s)	282, 324, 422, 492, 528, 928
TscAI	CASTG	2 cut(s)	241, 618
TseFI	GTSAC	2 cut(s)	442, 447
TseI	GCWGC	5 cut(s)	89, 127, 149, 855, 858
Tsp45I	GTSAC	2 cut(s)	442, 447
TspDTI	ATGAA	4 cut(s)	97, 279, 603, 651
TspRI	CASTG	2 cut(s)	241, 618
VpaK11BI	GGWCC	1 cut(s)	864
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	2 cut(s)	104, 590
XbaI	TCTAGA	2 cut(s)	181, 673
XceI	RCATGY	2 cut(s)	291, 746
XspI	CTAG	3 cut(s)	182, 666, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.