Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006035

Physical Location & Seq

Genomic Coordinates Forward (+)

31840791 .. 31842154

Gene Structure 1364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0221900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCGTGGTATAGGAAAGACAACGATTGCGAAATTTGTTTATAATCTGAACTTTGGAAGATTTGAAGGAAGCAGTTATCTTGAAAATATCCACGAAGTTTCAAAACTCCCTGGTGGCTTAGTTCAAATACAAAGACAACTTGTTTATGATATTTTGAACGGGAGAAAAGGGAAAATACATGGTATCAGTGAGGGAGTAGCTAAGATTGAACTCGCCATAAGCTCGAAAAGGGTTCTTATTGTTCTTGATGATGTGGATCATATGGACCAACTACATGCAGTATTTATGAGGAAAAATCAGTTTTATCCAGGAAGCAAGATCATCATAACAACTAGGCGTTCGAGATTATCCAAGGATCCTCAAGTTACTAAAGTTCATAATGTTGAAACTTTGGATTACGTTGAATCATTGGAGCTATTCAGTTGGCATGCTTTTGGACAGAACCATCCCATTGACGGTTACATGGAACTCTCAAAAAAGGTAGTAAGCCACAGTGGAGGACTCCCATTAGCACTTCGAGTTTTGGGTTCTTCTCTAGTGGGGGAGAGCAAAGCTGTCTGGGAAAGTGCATTGCAGAAATTAGAAAGTATTCCGCATAGTGAAATCATGAACAAACTTCGAATAAGCTACGACTCTTTACAAGATGACCATGACCAAAAATTATTCCTCTACATTGCATGTTTCTTTGTTGGAAAGCACCAAGGTTACATTGGTAGGGTATTAGATGGATGTGAATTCCAAACAGCTATTGGCGTTCAAAATCTCGTTGATAGATGTTTAGTGACAATTGATGTGTATGAAAATGTAGAAATGCATGAAATGCTTCGTGAAATGGGAAGAGCATTTGCAAGAATGCACAAACTAAGACTACTCTGGCTTAGTCATGTACAACTCAATGGATCTTATAGAGAATTTCCTACAGGATTAAGATGGTTGTGTTGGGTAGCATTTCCTTTGAGTTCTATACCAAATGATTTTACTTTGGAGAACCTTGTCTTTCTTGAAATGCAGTACAGCAGCTTGAGGCAAATGTGGAACGGAACAAAATTTCTTCCATCATTGAAAATGCTTGATGTCAGCCATTCTCATGACCTTACTAAGACCGCTGACTTCTCTCTTTGCCCCAATCTAGAAACACTTATTCTTGTAGGTTGTCGAAGCCTGATTGACGTCTATGAATCCATCGGAAACCTAAAGAGACTTGTTTACTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006888 GO:0006890 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031201 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

Syntaxin-18_N

Protein Analysis

405

Amino Acids

46.26

Weight (kDa)

8.39

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	1 - 147	1.3e-13	NB-ARC domain
WHD_ROQ1	PF23282	216 - 284	6.5e-19	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51740 AT1G51740
fragaria_vesca	FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790
malus_domestica	MD02G1196300.v1.1 MD07G1124900.v1.1
prunus_persica	Prupe.2G152400_v2.0.a1 Prupe.2G152400_v2.0.a1
pyrus_communis	pycom02g15990 pycom07g11830
rosa_chinensis	RchiOBHm_Chr1g0351821
rosa_laevigata	RLG00000028379
rosa_multiflora	Rmu_sc0001933.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303510
rosa_rugosa	Rorug01G0221900 Rorug01G0222000
rosa_samantha	Rh1AG235900 Rh1BG206400 Rh1CG220400 Rh1DG233400 Rh3BG294600
rosa_wichuraiana	Rw1G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AatII	GACGTC	1 cut(s)	1173
AciI	CCGC	2 cut(s)	593, 1104
AclWI	GGATC	4 cut(s)	264, 350, 363, 907
AcsI	RAATTY	4 cut(s)	32, 734, 911, 1046
AcyI	GRCGYC	1 cut(s)	1170
AfaI	GTAC	2 cut(s)	888, 1013
AfiI	CCNNNNNNNGG	1 cut(s)	455
AjnI	CCWGG	2 cut(s)	109, 307
AluBI	AGCT	7 cut(s)	200, 222, 415, 554, 627, 746, 1020
AluI	AGCT	7 cut(s)	200, 222, 415, 554, 627, 746, 1020
Alw26I	GTCTC	1 cut(s)	1192
AlwI	GGATC	4 cut(s)	264, 350, 363, 907
ApeKI	GCWGC	1 cut(s)	1017
ApoI	RAATTY	4 cut(s)	32, 734, 911, 1046
Asp700I	GAANNNNTTC	2 cut(s)	588, 822
AspS9I	GGNCC	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	619
AvaII	GGWCC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	1029
BccI	CCATC	5 cut(s)	453, 719, 924, 1063, 1190
BciT130I	CCWGG	2 cut(s)	111, 309
BcoDI	GTCTC	1 cut(s)	1192
BfaI	CTAG	3 cut(s)	333, 536, 1130
BfmI	CTRYAG	1 cut(s)	918
BisI	GCNGC	1 cut(s)	1018
BlsI	GCNGC	1 cut(s)	1019
Bme1390I	CCNGG	2 cut(s)	111, 309
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	2 cut(s)	111, 309
Bpu14I	TTCGAA	1 cut(s)	619
BpuEI	CTTGAG	2 cut(s)	345, 1042
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	1170
BsaJI	CCNNGG	3 cut(s)	109, 351, 700
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	569, 672
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	111, 309
BseDI	CCNNGG	3 cut(s)	109, 351, 700
BseGI	GGATG	2 cut(s)	445, 734
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	2 cut(s)	569, 672
BseXI	GCAGC	1 cut(s)	1029
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	1192
BsmI	GAATGC	1 cut(s)	858
Bsp119I	TTCGAA	1 cut(s)	619
Bsp1407I	TGTACA	1 cut(s)	886
Bsp143I	GATC	4 cut(s)	256, 318, 355, 899
BspACI	CCGC	2 cut(s)	593, 1104
BspHI	TCATGA	2 cut(s)	606, 1087
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	4 cut(s)	264, 350, 363, 907
BspQI	GCTCTTC	1 cut(s)	832
BspT104I	TTCGAA	1 cut(s)	619
BsrDI	GCAATG	2 cut(s)	569, 672
BsrGI	TGTACA	1 cut(s)	886
BssECI	CCNNGG	3 cut(s)	109, 351, 700
BssMI	GATC	4 cut(s)	256, 318, 355, 899
BssNI	GRCGYC	1 cut(s)	1170
BssT1I	CCWWGG	2 cut(s)	351, 700
Bst2UI	CCWGG	2 cut(s)	111, 309
Bst4CI	ACNGT	2 cut(s)	458, 494
Bst6I	CTCTTC	1 cut(s)	832
BstACI	GRCGYC	1 cut(s)	1170
BstAPI	GCANNNNNTGC	1 cut(s)	820
BstAUI	TGTACA	1 cut(s)	886
BstBI	TTCGAA	1 cut(s)	619
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	5 cut(s)	118, 201, 863, 878, 1098
BstF5I	GGATG	2 cut(s)	445, 734
BstKTI	GATC	4 cut(s)	259, 321, 358, 902
BstMAI	GTCTC	1 cut(s)	1192
BstMBI	GATC	4 cut(s)	256, 318, 355, 899
BstMWI	GCNNNNNNNGC	1 cut(s)	820
BstNI	CCWGG	2 cut(s)	111, 309
BstNSI	RCATGY	3 cut(s)	278, 431, 681
BstSCI	CCNGG	2 cut(s)	109, 307
BstSFI	CTRYAG	1 cut(s)	918
BstV1I	GCAGC	1 cut(s)	1029
BstX2I	RGATCY	2 cut(s)	355, 899
BstYI	RGATCY	2 cut(s)	355, 899
BtsCI	GGATG	2 cut(s)	445, 734
BtsIMutI	CAGTG	2 cut(s)	193, 499
Cac8I	GCNNGC	1 cut(s)	429
CciI	TCATGA	2 cut(s)	606, 1087
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	887, 1012
CviQI	GTAC	2 cut(s)	887, 1012
DdeI	CTNAG	5 cut(s)	118, 201, 863, 878, 1098
DpnI	GATC	4 cut(s)	258, 320, 357, 901
DpnII	GATC	4 cut(s)	256, 318, 355, 899
Eam1104I	CTCTTC	1 cut(s)	832
EarI	CTCTTC	1 cut(s)	832
Eco130I	CCWWGG	2 cut(s)	351, 700
Eco47I	GGWCC	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	109, 307
EcoT14I	CCWWGG	2 cut(s)	351, 700
EcoT22I	ATGCAT	1 cut(s)	816
ErhI	CCWWGG	2 cut(s)	351, 700
FauNDI	CATATG	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	1018
FokI	GGATG	2 cut(s)	432, 741
Fsp4HI	GCNGC	1 cut(s)	1018
FspBI	CTAG	3 cut(s)	333, 536, 1130
GluI	GCNGC	1 cut(s)	1018
Hin1I	GRCGYC	1 cut(s)	1170
HinfI	GANTC	4 cut(s)	404, 501, 632, 1178
Hpy166II	GTNNAC	1 cut(s)	1207
Hpy188I	TCNGA	2 cut(s)	48, 1187
Hpy188III	TCNNGA	8 cut(s)	80, 245, 342, 607, 827, 1001, 1088, 1130
Hpy8I	GTNNAC	1 cut(s)	1207
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	458, 494
HpyCH4IV	ACGT	2 cut(s)	399, 1170
HpyCH4V	TGCA	8 cut(s)	278, 569, 574, 677, 814, 848, 856, 1009
HpyF10VI	GCNNNNNNNGC	1 cut(s)	820
HpyF3I	CTNAG	5 cut(s)	118, 201, 863, 878, 1098
HpySE526I	ACGT	2 cut(s)	399, 1170
Hsp92I	GRCGYC	1 cut(s)	1170
Kzo9I	GATC	4 cut(s)	256, 318, 355, 899
LguI	GCTCTTC	1 cut(s)	832
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	96, 123, 294, 321, 544, 859, 906, 1175
Lsp1109I	GCAGC	1 cut(s)	1029
MaeI	CTAG	3 cut(s)	333, 536, 1130
MaeII	ACGT	2 cut(s)	399, 1170
MaeIII	GTNAC	4 cut(s)	364, 458, 704, 781
MalI	GATC	4 cut(s)	258, 320, 357, 901
MboI	GATC	4 cut(s)	256, 318, 355, 899
MboII	GAAGA	4 cut(s)	69, 522, 849, 1043
MfeI	CAATTG	1 cut(s)	786
MflI	RGATCY	2 cut(s)	355, 899
MluCI	AATT	7 cut(s)	32, 578, 659, 734, 786, 911, 1046
MlyI	GAGTC	2 cut(s)	495, 626
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	6 cut(s)	184, 282, 369, 491, 677, 1017
Mph1103I	ATGCAT	1 cut(s)	816
MroXI	GAANNNNTTC	2 cut(s)	588, 822
MseI	TTAA	1 cut(s)	926
MslI	CAYNNNNRTG	1 cut(s)	1086
MspA1I	CMGCKG	1 cut(s)	1106
MspR9I	CCNGG	2 cut(s)	111, 309
MunI	CAATTG	1 cut(s)	786
Mva1269I	GAATGC	1 cut(s)	858
MvaI	CCWGG	2 cut(s)	111, 309
MwoI	GCNNNNNNNGC	1 cut(s)	820
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	4 cut(s)	256, 318, 355, 899
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	816
NspI	RCATGY	3 cut(s)	278, 431, 681
NspV	TTCGAA	1 cut(s)	619
PaeI	GCATGC	1 cut(s)	431
PagI	TCATGA	2 cut(s)	606, 1087
PciSI	GCTCTTC	1 cut(s)	832
PctI	GAATGC	1 cut(s)	858
PdmI	GAANNNNTTC	2 cut(s)	588, 822
PfeI	GAWTC	2 cut(s)	404, 1178
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	1019
PleI	GAGTC	2 cut(s)	495, 626
PpsI	GAGTC	2 cut(s)	495, 626
PsiI	TTATAA	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	109, 307
PspGI	CCWGG	2 cut(s)	109, 307
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	355, 899
RsaI	GTAC	2 cut(s)	888, 1013
RsaNI	GTAC	2 cut(s)	887, 1012
RseI	CAYNNNNRTG	1 cut(s)	1086
SapI	GCTCTTC	1 cut(s)	832
SaqAI	TTAA	1 cut(s)	926
SatI	GCNGC	1 cut(s)	1018
Sau3AI	GATC	4 cut(s)	256, 318, 355, 899
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	495, 626
ScrFI	CCNGG	2 cut(s)	111, 309
SfcI	CTRYAG	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	619
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	1086
SmlI	CTYRAG	2 cut(s)	360, 1021
SmoI	CTYRAG	2 cut(s)	360, 1021
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	7 cut(s)	32, 578, 659, 734, 786, 911, 1046
SsiI	CCGC	2 cut(s)	593, 1104
SspMI	CTAG	3 cut(s)	333, 536, 1130
StyD4I	CCNGG	2 cut(s)	109, 307
StyI	CCWWGG	2 cut(s)	351, 700
TaaI	ACNGT	2 cut(s)	458, 494
TaiI	ACGT	2 cut(s)	402, 1173
TaqI	TCGA	5 cut(s)	224, 341, 517, 619, 1156
TasI	AATT	7 cut(s)	32, 578, 659, 734, 786, 911, 1046
TatI	WGTACW	2 cut(s)	886, 1011
TfiI	GAWTC	2 cut(s)	404, 1178
Tru1I	TTAA	1 cut(s)	926
Tru9I	TTAA	1 cut(s)	926
TscAI	CASTG	2 cut(s)	193, 499
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	1 cut(s)	1017
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	5 cut(s)	365, 623, 813, 831, 1191
TspGWI	ACGGA	1 cut(s)	1053
TspRI	CASTG	2 cut(s)	193, 499
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	4 cut(s)	32, 734, 911, 1046
XbaI	TCTAGA	1 cut(s)	1129
XceI	RCATGY	3 cut(s)	278, 431, 681
XcmI	CCANNNNNNNNNTGG	2 cut(s)	707, 746
XmnI	GAANNNNTTC	2 cut(s)	588, 822
XspI	CTAG	3 cut(s)	333, 536, 1130
ZraI	GACGTC	1 cut(s)	1171
Zsp2I	ATGCAT	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.