Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006035

Physical Location & Seq

Genomic Coordinates Forward (+)

13145026 .. 13147073

Gene Structure 2048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g11830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCGAAAGTCAGGGATAGGATCGAAGATTTCAAGGATGCTGTGCGCCACTCTGCTATCTCTATGGGTTACAACGAGTCCAAATTGGCAGCAATTATGGCGAAATTCATTATTCATGCCCCTCGCCAAAGGTCGCCTTTTACCAGAGCTGCCCTCAAGACGCTCGAAAGCATTGGAACTCTGGAACAGTTTATGTTGAAACATCGAAAGGATTATGTCGATCTGCATCGCACCACTGAACAGGAGAGAGATAGCATTGAGCATGAAGTTAGTACTTTTATTAAAGCATGCCAAGAACAAATTGATGTTCTGAAAAATAGCATTAACGATGACGAGGCAAACTCAAAGGGATGGCTGGGCATTAGGACTGATTACTCTAATGCTGATATTATAGCTCACAAACATGGTGTGGTTTTGATTTTAAGCGAGAGACTCCATTCAGTCACGTCACGTTTTGATCAGCTAAGAGCCGTACGTTTCCAAGATTCCATTAATAAAGCAACACCAAGAAGAAAACTTAAGCGGATTAAGACCACAGAATCTGCAGATATCTCTAACTCTAACAATTTGGAGCTCAGAGAACCTAATGAATTTCAACCCGAGCCTCTAACAGTGCAACAAGAACTTTTAGATGATGAAACACGTGCCCTTCAGGTAGAGCTGACTGGCCTTCTAGATGCAGTTCAAGAAACCGAAACTAAGATGGTGGAAATGTCTGCGCTGAATCACCTTATGTCCACACATGTTTTGCAACAAGCTCACCAAATAGAGCAACTATACGATCAGGCAGTTGAAGCTACAACGAACGTAGAGCTTGGTAACAAAGAGATCTCCAAAGCAATCCAGCGGAATAGCAGCAGCAGGACGTTTCTTTTGCTTTTCCTATTTGTACTTACTTTTTCGATTCTCTTTCTTGATTGGTATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006888 GO:0006890 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031201 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

Syntaxin-18_N

Protein Analysis

310

Amino Acids

35.53

Weight (kDa)

6.02

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51740 AT1G51740
fragaria_vesca	FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790
malus_domestica	MD02G1196300.v1.1 MD07G1124900.v1.1
prunus_persica	Prupe.2G152400_v2.0.a1 Prupe.2G152400_v2.0.a1
pyrus_communis	pycom02g15990 pycom07g11830
rosa_chinensis	RchiOBHm_Chr1g0351821
rosa_laevigata	RLG00000028379
rosa_multiflora	Rmu_sc0001933.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303510
rosa_rugosa	Rorug01G0221900 Rorug01G0222000
rosa_samantha	Rh1AG235900 Rh1BG206400 Rh1CG220400 Rh1DG233400 Rh3BG294600
rosa_wichuraiana	Rw1G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	523, 847
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	104, 590
AcuI	CTGAAG	1 cut(s)	635
AcvI	CACGTG	1 cut(s)	644
AfaI	GTAC	3 cut(s)	274, 474, 891
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	2 cut(s)	641, 742
AgsI	TTSAA	5 cut(s)	34, 199, 596, 686, 794
AjiI	CACGTC	1 cut(s)	447
AluBI	AGCT	8 cut(s)	149, 395, 463, 574, 661, 758, 797, 814
AluI	AGCT	8 cut(s)	149, 395, 463, 574, 661, 758, 797, 814
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	1 cut(s)	667
ApeKI	GCWGC	4 cut(s)	89, 149, 855, 858
ApoI	RAATTY	2 cut(s)	104, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	856, 888
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	48, 721
AsuHPI	GGTGA	2 cut(s)	719, 752
AvaI	CYCGRG	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	576
BbrPI	CACGTG	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	4 cut(s)	101, 136, 867, 870
BccI	CCATC	2 cut(s)	345, 697
BceAI	ACGGC	1 cut(s)	455
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	518
BglII	AGATCT	1 cut(s)	828
BisI	GCNGC	4 cut(s)	90, 150, 856, 859
BlsI	GCNGC	4 cut(s)	91, 151, 857, 860
BmcAI	AGTACT	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	599
BmgBI	CACGTC	1 cut(s)	447
BmsI	GCATC	3 cut(s)	28, 235, 667
BplI	GAGNNNNNCTC	4 cut(s)	138, 170, 326, 358
BpuEI	CTTGAG	1 cut(s)	140
BsaAI	YACGTR	1 cut(s)	644
BsaBI	GATNNNNATC	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	670
Bse8I	GATNNNNATC	1 cut(s)	225
BseGI	GGATG	2 cut(s)	43, 356
BseJI	GATNNNNATC	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	589
BseNI	ACTGG	1 cut(s)	670
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	4 cut(s)	101, 136, 867, 870
BseYI	CCCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	669
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	599
BsiWI	CGTACG	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	669
BsoBI	CYCGRG	1 cut(s)	599
Bsp1286I	GDGCHC	2 cut(s)	576, 649
Bsp143I	GATC	5 cut(s)	21, 220, 457, 781, 828
BspACI	CCGC	2 cut(s)	523, 847
BspANI	GGCC	1 cut(s)	669
BspCNI	CTCAG	1 cut(s)	588
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	29
BspTI	CTTAAG	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	670
BssMI	GATC	5 cut(s)	21, 220, 457, 781, 828
Bst4CI	ACNGT	2 cut(s)	189, 613
BstAFI	CTTAAG	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	464, 575, 699
BstF5I	GGATG	2 cut(s)	43, 356
BstHHI	GCGC	2 cut(s)	48, 721
BstKTI	GATC	5 cut(s)	24, 223, 460, 784, 831
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	5 cut(s)	21, 220, 457, 781, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 794
BstNSI	RCATGY	2 cut(s)	291, 746
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	4 cut(s)	101, 136, 867, 870
BstX2I	RGATCY	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	828
BsuRI	GGCC	1 cut(s)	669
BtgZI	GCGATG	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	43, 356
BtsIMutI	CAGTG	2 cut(s)	234, 618
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	2 cut(s)	48, 721
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	273, 473, 890
CviAII	CATG	5 cut(s)	116, 263, 288, 404, 743
CviQI	GTAC	3 cut(s)	273, 473, 890
DdeI	CTNAG	3 cut(s)	464, 575, 699
DpnI	GATC	5 cut(s)	23, 222, 459, 783, 830
DpnII	GATC	5 cut(s)	21, 220, 457, 781, 828
Ecl136II	GAGCTC	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	635
Eco72I	CACGTG	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	574
EcoRV	GATATC	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	576
FaeI	CATG	5 cut(s)	119, 266, 291, 407, 746
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FatI	CATG	5 cut(s)	115, 262, 287, 403, 742
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	90, 150, 856, 859
FokI	GGATG	2 cut(s)	50, 363
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	4 cut(s)	90, 150, 856, 859
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	2 cut(s)	47, 720
GluI	GCNGC	4 cut(s)	90, 150, 856, 859
GsaI	CCCAGC	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	669
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	48, 721
Hin1II	CATG	5 cut(s)	119, 266, 291, 407, 746
Hin6I	GCGC	2 cut(s)	46, 719
HinP1I	GCGC	2 cut(s)	46, 719
HinfI	GANTC	6 cut(s)	77, 432, 485, 539, 724, 904
HphI	GGTGA	2 cut(s)	719, 752
Hpy166II	GTNNAC	1 cut(s)	738
Hpy188I	TCNGA	2 cut(s)	312, 578
Hpy188III	TCNNGA	5 cut(s)	157, 182, 674, 686, 914
Hpy8I	GTNNAC	1 cut(s)	738
HpyAV	CCTTC	2 cut(s)	659, 680
HpyCH4III	ACNGT	2 cut(s)	189, 613
HpyCH4IV	ACGT	6 cut(s)	446, 451, 475, 643, 807, 866
HpyCH4V	TGCA	5 cut(s)	226, 545, 616, 680, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 794
HpyF3I	CTNAG	3 cut(s)	464, 575, 699
HpySE526I	ACGT	6 cut(s)	446, 451, 475, 643, 807, 866
Hsp92II	CATG	5 cut(s)	119, 266, 291, 407, 746
HspAI	GCGC	2 cut(s)	46, 719
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	5 cut(s)	21, 220, 457, 781, 828
LmnI	GCTCC	1 cut(s)	571
LpnPI	CCDG	9 cut(s)	157, 167, 227, 341, 638, 651, 770, 847, 857
Lsp1109I	GCAGC	4 cut(s)	101, 136, 867, 870
LweI	GCATC	3 cut(s)	28, 235, 667
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	6 cut(s)	446, 451, 475, 643, 807, 866
MaeIII	GTNAC	4 cut(s)	68, 442, 447, 818
MalI	GATC	5 cut(s)	23, 222, 459, 783, 830
MboI	GATC	5 cut(s)	21, 220, 457, 781, 828
MboII	GAAGA	2 cut(s)	38, 522
MflI	RGATCY	1 cut(s)	828
MhlI	GDGCHC	2 cut(s)	576, 649
MluCI	AATT	6 cut(s)	83, 93, 104, 300, 565, 590
MlyI	GAGTC	2 cut(s)	86, 426
MnlI	CCTC	4 cut(s)	132, 164, 328, 615
MseI	TTAA	7 cut(s)	282, 324, 422, 492, 519, 528, 928
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	847
MspCI	CTTAAG	1 cut(s)	518
MwoI	GCNNNNNNNGC	2 cut(s)	98, 794
NdeII	GATC	5 cut(s)	21, 220, 457, 781, 828
NlaIII	CATG	5 cut(s)	119, 266, 291, 407, 746
NmuCI	GTSAC	2 cut(s)	442, 447
NspI	RCATGY	2 cut(s)	291, 746
PaeI	GCATGC	1 cut(s)	291
PciI	ACATGT	1 cut(s)	742
PfeI	GAWTC	4 cut(s)	485, 539, 724, 904
Pfl23II	CGTACG	1 cut(s)	472
PkrI	GCNGC	4 cut(s)	91, 151, 857, 860
PleI	GAGTC	2 cut(s)	85, 426
PmaCI	CACGTG	1 cut(s)	644
PmlI	CACGTG	1 cut(s)	644
PpsI	GAGTC	2 cut(s)	85, 426
Ppu21I	YACGTR	1 cut(s)	644
PscI	ACATGT	1 cut(s)	742
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	576
PspCI	CACGTG	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	355
PspLI	CGTACG	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	828
RsaI	GTAC	3 cut(s)	274, 474, 891
RsaNI	GTAC	3 cut(s)	273, 473, 890
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	7 cut(s)	282, 324, 422, 492, 519, 528, 928
SatI	GCNGC	4 cut(s)	90, 150, 856, 859
Sau3AI	GATC	5 cut(s)	21, 220, 457, 781, 828
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	2 cut(s)	86, 426
SduI	GDGCHC	2 cut(s)	576, 649
SfaNI	GCATC	3 cut(s)	28, 235, 667
SfcI	CTRYAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	155, 518
SmoI	CTYRAG	2 cut(s)	155, 518
SphI	GCATGC	1 cut(s)	291
Sse9I	AATT	6 cut(s)	83, 93, 104, 300, 565, 590
SsiI	CCGC	2 cut(s)	523, 847
SspMI	CTAG	1 cut(s)	674
SstI	GAGCTC	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	189, 613
TaiI	ACGT	6 cut(s)	449, 454, 478, 646, 810, 869
TaqI	TCGA	6 cut(s)	5, 24, 165, 205, 219, 902
TasI	AATT	6 cut(s)	83, 93, 104, 300, 565, 590
TatI	WGTACW	2 cut(s)	272, 889
TfiI	GAWTC	4 cut(s)	485, 539, 724, 904
Tru1I	TTAA	7 cut(s)	282, 324, 422, 492, 519, 528, 928
Tru9I	TTAA	7 cut(s)	282, 324, 422, 492, 519, 528, 928
TscAI	CASTG	2 cut(s)	241, 618
TseFI	GTSAC	2 cut(s)	442, 447
TseI	GCWGC	4 cut(s)	89, 149, 855, 858
Tsp45I	GTSAC	2 cut(s)	442, 447
TspDTI	ATGAA	5 cut(s)	97, 104, 279, 603, 651
TspRI	CASTG	2 cut(s)	241, 618
Vha464I	CTTAAG	1 cut(s)	518
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	2 cut(s)	104, 590
XbaI	TCTAGA	1 cut(s)	673
XceI	RCATGY	2 cut(s)	291, 746
XspI	CTAG	1 cut(s)	674
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.