Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006035

Physical Location & Seq

Genomic Coordinates Forward (+)

11586417 .. 11590010

Gene Structure 3594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12790.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGAAATTCAGAGATAGGATGGAAGATTTCAAAGACGCAGTACGGCAGGCTGCCATTTCTTCCGGCTACAACGAGTCCAAATTGGCAGCGGTTATGGCCAAGTTCATTATACACCCACCTCGCCAAAGGTCACCTTTCACCCGCGCTGCTTACAAAACGCTTGAAAGCATTGGAGCTCTGGAACAGTTTATGTTGAAACATCGAAAGGATTATGTGGATCGGCATCGCACCACTGAACATGAAAGAGATAGCATTGAGCAGGAAGTTAGTGCTTTTATTAAAGTGTGCCAAGAACAGATTAGTGTTCTCAAAAATAGCATCAATGATGACGAGGCAAAGTCAAAGGGCTGGCTTGGTATTAGGGTGGATCACTCTAATGCTGACACTATAGCACACAAGCATGGTGTGGTTTTGATTTTAAGTGAGAGACTCCATTCTGTCACGTCCCGGTATGATCAGCTAAGATCCATACGCTTCCAAGATACCTTTAGCAGAGCAACGCCAAGAAGAAAACTTAACCGGATTCCAAAAAAAGAATCCGAAGATACCTCCAGTTCTAACAATTTAGAGGTCAGGGAACCTGAAGCATATCAGGCGCAGTCTCTAACGGTCCAACAACAGCTTTTGGATGATGAAACACGCGCCCTTCAGGTAGAGCTGACCAGCCTTCTAGATGCAGTTCAAGAAACTGAAAATAAGATGGTTGAAATGTCTGCACTAAATCACCTTATGTCTACACATGTTCTGCAACAACGTGAACAAATAGAACAACTTTATGACCAAGCAGTTGAAGCCACACACAATGTAGATCTCGGCAACAAAGAGCTTTCCAAAGCAATCCAGCGAAATACCAGCAGCAGGACCTTTCTTCTGCTCTTCCTGTTTGTACTTACGTTTTCCATTCTCTTTCTTGATTGGTATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006888 GO:0006890 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031201 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

Syntaxin-18_N

Protein Analysis

310

Amino Acids

35.73

Weight (kDa)

6.61

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51740 AT1G51740
fragaria_vesca	FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790
malus_domestica	MD02G1196300.v1.1 MD07G1124900.v1.1
prunus_persica	Prupe.2G152400_v2.0.a1 Prupe.2G152400_v2.0.a1
pyrus_communis	pycom02g15990 pycom07g11830
rosa_chinensis	RchiOBHm_Chr1g0351821
rosa_laevigata	RLG00000028379
rosa_multiflora	Rmu_sc0001933.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303510
rosa_rugosa	Rorug01G0221900 Rorug01G0222000
rosa_samantha	Rh1AG235900 Rh1BG206400 Rh1CG220400 Rh1DG233400 Rh3BG294600
rosa_wichuraiana	Rw1G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	737
AccII	CGCG	2 cut(s)	147, 645
AciI	CCGC	2 cut(s)	92, 145
AclWI	GGATC	3 cut(s)	228, 378, 462
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	2 cut(s)	606, 635
AfaI	GTAC	2 cut(s)	45, 891
AfiI	CCNNNNNNNGG	1 cut(s)	861
AflIII	ACRYGT	1 cut(s)	742
AgsI	TTSAA	6 cut(s)	34, 167, 199, 686, 710, 794
AjiI	CACGTC	1 cut(s)	447
AluBI	AGCT	5 cut(s)	179, 463, 625, 661, 829
AluI	AGCT	5 cut(s)	179, 463, 625, 661, 829
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	2 cut(s)	424, 609
AlwI	GGATC	3 cut(s)	228, 378, 462
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	4 cut(s)	53, 89, 149, 858
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	149, 601, 647
AspS9I	GGNCC	2 cut(s)	613, 864
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	126, 133, 719
AvaII	GGWCC	2 cut(s)	613, 864
BalI	TGGCCA	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	4 cut(s)	40, 101, 136, 870
BccI	CCATC	2 cut(s)	16, 697
BceAI	ACGGC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	424, 609
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	4 cut(s)	54, 90, 150, 859
BlsI	GCNGC	4 cut(s)	55, 91, 151, 860
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	2 cut(s)	613, 864
BmgBI	CACGTC	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	613, 864
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	3 cut(s)	235, 330, 667
BpmI	CTGGAG	1 cut(s)	538
BpuMI	CCSGG	1 cut(s)	451
BsaBI	GATNNNNATC	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	1 cut(s)	861
Bse1I	ACTGG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	225
BseGI	GGATG	2 cut(s)	27, 637
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	861
BseNI	ACTGG	1 cut(s)	555
BseXI	GCAGC	4 cut(s)	40, 101, 136, 870
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	2 cut(s)	147, 645
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	66, 451, 523
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	861
BsmAI	GTCTC	2 cut(s)	424, 609
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	220, 370, 457, 467, 811
BspACI	CCGC	2 cut(s)	92, 145
BspANI	GGCC	1 cut(s)	101
BspFNI	CGCG	2 cut(s)	147, 645
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	3 cut(s)	228, 378, 462
BspQI	GCTCTTC	1 cut(s)	884
BsrI	ACTGG	1 cut(s)	555
BssMI	GATC	5 cut(s)	220, 370, 457, 467, 811
Bst4CI	ACNGT	2 cut(s)	189, 613
Bst6I	CTCTTC	1 cut(s)	884
BstC8I	GCNNGC	2 cut(s)	51, 353
BstDEI	CTNAG	1 cut(s)	464
BstEII	GGTNACC	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	27, 637
BstFNI	CGCG	2 cut(s)	147, 645
BstHHI	GCGC	3 cut(s)	149, 601, 647
BstKTI	GATC	5 cut(s)	223, 373, 460, 470, 814
BstMAI	GTCTC	2 cut(s)	424, 609
BstMBI	GATC	5 cut(s)	220, 370, 457, 467, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 596, 794
BstNSI	RCATGY	1 cut(s)	746
BstPI	GGTNACC	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	2 cut(s)	147, 645
BstV1I	GCAGC	4 cut(s)	40, 101, 136, 870
BstX2I	RGATCY	2 cut(s)	467, 811
BstYI	RGATCY	2 cut(s)	467, 811
BsuRI	GGCC	1 cut(s)	101
BtgZI	GCGATG	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	27, 637
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	51, 353
CfoI	GCGC	3 cut(s)	149, 601, 647
Cfr13I	GGNCC	2 cut(s)	613, 864
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	44, 890
CviAII	CATG	3 cut(s)	242, 404, 743
CviQI	GTAC	2 cut(s)	44, 890
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	5 cut(s)	222, 372, 459, 469, 813
DpnII	GATC	5 cut(s)	220, 370, 457, 467, 811
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	884
EarI	CTCTTC	1 cut(s)	884
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	613, 864
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	2 cut(s)	606, 635
Eco91I	GGTNACC	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	864
EcoO65I	GGTNACC	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	3 cut(s)	245, 407, 746
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	3 cut(s)	241, 403, 742
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	4 cut(s)	54, 90, 150, 859
FokI	GGATG	2 cut(s)	34, 644
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	4 cut(s)	54, 90, 150, 859
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	3 cut(s)	148, 600, 646
GluI	GCNGC	4 cut(s)	54, 90, 150, 859
GsuI	CTGGAG	1 cut(s)	538
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	3 cut(s)	66, 451, 523
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	3 cut(s)	149, 601, 647
Hin1II	CATG	3 cut(s)	245, 407, 746
Hin6I	GCGC	3 cut(s)	147, 599, 645
HinP1I	GCGC	3 cut(s)	147, 599, 645
HinfI	GANTC	4 cut(s)	77, 432, 526, 539
HpaII	CCGG	3 cut(s)	66, 451, 523
HphI	GGTGA	3 cut(s)	126, 133, 719
Hpy166II	GTNNAC	2 cut(s)	738, 761
Hpy188I	TCNGA	2 cut(s)	14, 544
Hpy188III	TCNNGA	4 cut(s)	182, 674, 686, 914
Hpy8I	GTNNAC	2 cut(s)	738, 761
HpyAV	CCTTC	2 cut(s)	659, 680
HpyCH4III	ACNGT	2 cut(s)	189, 613
HpyCH4IV	ACGT	3 cut(s)	446, 757, 896
HpyCH4V	TGCA	3 cut(s)	680, 719, 751
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 596, 794
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	3 cut(s)	446, 757, 896
Hsp92II	CATG	3 cut(s)	245, 407, 746
HspAI	GCGC	3 cut(s)	147, 599, 645
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	5 cut(s)	220, 370, 457, 467, 811
LguI	GCTCTTC	1 cut(s)	884
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	4 cut(s)	40, 101, 136, 870
LweI	GCATC	3 cut(s)	235, 330, 667
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	3 cut(s)	446, 757, 896
MaeIII	GTNAC	2 cut(s)	132, 442
MalI	GATC	5 cut(s)	222, 372, 459, 469, 813
MboI	GATC	5 cut(s)	220, 370, 457, 467, 811
MboII	GAAGA	6 cut(s)	38, 54, 522, 557, 863, 871
MflI	RGATCY	2 cut(s)	467, 811
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	3 cut(s)	8, 83, 565
MluNI	TGGCCA	1 cut(s)	101
MlyI	GAGTC	2 cut(s)	86, 426
MmeI	TCCRAC	1 cut(s)	640
MnlI	CCTC	4 cut(s)	132, 328, 562, 565
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	4 cut(s)	282, 422, 519, 928
MslI	CAYNNNNRTG	2 cut(s)	378, 402
Msp20I	TGGCCA	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	3 cut(s)	66, 451, 523
MspR9I	CCNGG	1 cut(s)	451
MvnI	CGCG	2 cut(s)	147, 645
MwoI	GCNNNNNNNGC	3 cut(s)	98, 596, 794
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	5 cut(s)	220, 370, 457, 467, 811
NlaIII	CATG	3 cut(s)	245, 407, 746
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	795
NmuCI	GTSAC	2 cut(s)	132, 442
NspI	RCATGY	1 cut(s)	746
PciI	ACATGT	1 cut(s)	742
PciSI	GCTCTTC	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	526, 539
PkrI	GCNGC	4 cut(s)	55, 91, 151, 860
PleI	GAGTC	2 cut(s)	85, 426
PpsI	GAGTC	2 cut(s)	85, 426
PpuMI	RGGWCCY	1 cut(s)	864
PscI	ACATGT	1 cut(s)	742
Psp124BI	GAGCTC	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	864
PspEI	GGTNACC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	613, 864
PspPPI	RGGWCCY	1 cut(s)	864
PsuI	RGATCY	2 cut(s)	467, 811
RsaI	GTAC	2 cut(s)	45, 891
RsaNI	GTAC	2 cut(s)	44, 890
RseI	CAYNNNNRTG	2 cut(s)	378, 402
SacI	GAGCTC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	884
SaqAI	TTAA	4 cut(s)	282, 422, 519, 928
SatI	GCNGC	4 cut(s)	54, 90, 150, 859
Sau3AI	GATC	5 cut(s)	220, 370, 457, 467, 811
Sau96I	GGNCC	2 cut(s)	613, 864
SchI	GAGTC	2 cut(s)	86, 426
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	3 cut(s)	235, 330, 667
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	2 cut(s)	613, 864
SmiMI	CAYNNNNRTG	2 cut(s)	378, 402
Sse9I	AATT	3 cut(s)	8, 83, 565
SsiI	CCGC	2 cut(s)	92, 145
SspMI	CTAG	1 cut(s)	674
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	449
TaaI	ACNGT	2 cut(s)	189, 613
TaiI	ACGT	3 cut(s)	449, 760, 899
TaqI	TCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	8, 83, 565
TatI	WGTACW	1 cut(s)	889
TfiI	GAWTC	2 cut(s)	526, 539
Tru1I	TTAA	4 cut(s)	282, 422, 519, 928
Tru9I	TTAA	4 cut(s)	282, 422, 519, 928
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	132, 442
TseI	GCWGC	4 cut(s)	53, 89, 149, 858
Tsp45I	GTSAC	2 cut(s)	132, 442
TspDTI	ATGAA	3 cut(s)	97, 258, 651
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	613, 864
XapI	RAATTY	1 cut(s)	8
XbaI	TCTAGA	1 cut(s)	673
XceI	RCATGY	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	737
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.