Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006035

Physical Location & Seq

Genomic Coordinates Forward (+)

32483883 .. 32488228

Gene Structure 4346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG206400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAATCAGCTTGAAAGCATTGGAGCTCTGGAACAGTTTATGTTGAAACATCGAAAGGATTATGTGGATCGGCATCGCACCACTGAACATGAGAGAGATAGCATTGAGCAGGAAGTTAATGCTTTTATTAAAGCGTGCCAAGAACAAATTAATGTTCTCAAAAATAGTATTAATGATGAGGAGGCACAGTCAAAGGGCTGGCTTGGTATTAGGGCTGATCACTCTAATGCTGATACTATAGCACACAAGCATGGGGTGGTTTTGATTTTAAGTGAGAGACTTCATTCTGTCACATCACAGTATGATCAGCTAAGATCCATACGCTTCCAAGATACCTTTAGCAGAGCAACACCAAGAAGAAAACTTAACCGGAATCCAAAATCAAAATCCGAAGATACCTCCAATTCTAACAATTTAGAGGTCAGAGAACCTGAAGCGTTTCAGGCGCAGTCTCTAACCGTCCAACAACAGCTCTTGGATGATGAAACACGCGCCCTTCAGGTAGAGTTGACTAGCCTTCTAGATGCAGTTCAGGAAACTGAAACTAAGATGGTGGAAATGTCTGCACTAAATCACCTTCTGTCTACACATGTTCTGCAACAACGTGAACAAATAGAGCAACTATATGACCAAGCAGTTGAAGCCACACACAATGTAGATCTCGGCAACAAAGAGCTTTCCAAAGCAATCCAGAGAAATACCGGCAGCAGGACCTTTCTTTTGCTCTTCCTATTTGTACTTACTTTTTCCATTATCTTCCTTGATTGGTATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006888 GO:0006890 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031201 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

Syntaxin-18_N

Protein Analysis

258

Amino Acids

29.8

Weight (kDa)

5.6

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51740 AT1G51740
fragaria_vesca	FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790
malus_domestica	MD02G1196300.v1.1 MD07G1124900.v1.1
prunus_persica	Prupe.2G152400_v2.0.a1 Prupe.2G152400_v2.0.a1
pyrus_communis	pycom02g15990 pycom07g11830
rosa_chinensis	RchiOBHm_Chr1g0351821
rosa_laevigata	RLG00000028379
rosa_multiflora	Rmu_sc0001933.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303510
rosa_rugosa	Rorug01G0221900 Rorug01G0222000
rosa_samantha	Rh1AG235900 Rh1BG206400 Rh1CG220400 Rh1DG233400 Rh3BG294600
rosa_wichuraiana	Rw1G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	584
AccII	CGCG	1 cut(s)	492
AclWI	GGATC	2 cut(s)	75, 309
AcuI	CTGAAG	2 cut(s)	453, 482
AfaI	GTAC	1 cut(s)	738
AfiI	CCNNNNNNNGG	1 cut(s)	708
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	3 cut(s)	14, 46, 641
AluBI	AGCT	5 cut(s)	10, 26, 310, 472, 676
AluI	AGCT	5 cut(s)	10, 26, 310, 472, 676
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	2 cut(s)	271, 456
AlwI	GGATC	2 cut(s)	75, 309
ApeKI	GCWGC	1 cut(s)	705
ArsI	GACNNNNNNTTYG	2 cut(s)	703, 735
AseI	ATTAAT	2 cut(s)	150, 171
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	448, 494
AspS9I	GGNCC	1 cut(s)	711
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	717
BccI	CCATC	1 cut(s)	544
BclI	TGATCA	2 cut(s)	217, 304
BcoDI	GTCTC	2 cut(s)	271, 456
BfaI	CTAG	2 cut(s)	513, 521
BfmI	CTRYAG	1 cut(s)	237
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	1 cut(s)	706
BlsI	GCNGC	1 cut(s)	707
Bme18I	GGWCC	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	711
BmsI	GCATC	2 cut(s)	82, 514
BsaBI	GATNNNNATC	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	708
Bse118I	RCCGGY	1 cut(s)	701
Bse8I	GATNNNNATC	1 cut(s)	72
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	708
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	717
BsgI	GTGCAG	1 cut(s)	549
Bsh1236I	CGCG	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	370, 702
BslI	CCNNNNNNNGG	1 cut(s)	708
BsmAI	GTCTC	2 cut(s)	271, 456
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	5 cut(s)	67, 217, 304, 314, 658
BspFNI	CGCG	1 cut(s)	492
BspPI	GGATC	2 cut(s)	75, 309
BspQI	GCTCTTC	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	701
BssAI	RCCGGY	1 cut(s)	701
BssMI	GATC	5 cut(s)	67, 217, 304, 314, 658
Bst4CI	ACNGT	4 cut(s)	36, 189, 300, 460
Bst6I	CTCTTC	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	136, 200
BstDEI	CTNAG	2 cut(s)	311, 546
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	492
BstHHI	GCGC	2 cut(s)	448, 494
BstKTI	GATC	5 cut(s)	70, 220, 307, 317, 661
BstMAI	GTCTC	2 cut(s)	271, 456
BstMBI	GATC	5 cut(s)	67, 217, 304, 314, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 641
BstNSI	RCATGY	1 cut(s)	593
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	717
BstX2I	RGATCY	2 cut(s)	314, 658
BstYI	RGATCY	2 cut(s)	314, 658
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	136, 200
CfoI	GCGC	2 cut(s)	448, 494
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	1 cut(s)	711
Csp6I	GTAC	1 cut(s)	737
CviAII	CATG	3 cut(s)	89, 251, 590
CviQI	GTAC	1 cut(s)	737
DdeI	CTNAG	2 cut(s)	311, 546
DpnI	GATC	5 cut(s)	69, 219, 306, 316, 660
DpnII	GATC	5 cut(s)	67, 217, 304, 314, 658
Eam1104I	CTCTTC	1 cut(s)	731
EarI	CTCTTC	1 cut(s)	731
Ecl136II	GAGCTC	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	711
Eco53kI	GAGCTC	1 cut(s)	26
Eco57I	CTGAAG	2 cut(s)	453, 482
EcoICRI	GAGCTC	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	711
EcoT38I	GRGCYC	1 cut(s)	28
FaeI	CATG	3 cut(s)	92, 254, 593
FatI	CATG	3 cut(s)	88, 250, 589
FbaI	TGATCA	2 cut(s)	217, 304
FblI	GTMKAC	1 cut(s)	584
Fnu4HI	GCNGC	1 cut(s)	706
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	706
FspBI	CTAG	2 cut(s)	513, 521
GlaI	GCGC	2 cut(s)	447, 493
GluI	GCNGC	1 cut(s)	706
HapII	CCGG	2 cut(s)	370, 702
HhaI	GCGC	2 cut(s)	448, 494
Hin1II	CATG	3 cut(s)	92, 254, 593
Hin6I	GCGC	2 cut(s)	446, 492
HinP1I	GCGC	2 cut(s)	446, 492
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	2 cut(s)	4, 373
HpaII	CCGG	2 cut(s)	370, 702
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	3 cut(s)	510, 585, 608
Hpy188I	TCNGA	2 cut(s)	391, 425
Hpy188III	TCNNGA	4 cut(s)	29, 521, 533, 691
Hpy8I	GTNNAC	3 cut(s)	510, 585, 608
HpyAV	CCTTC	3 cut(s)	506, 527, 587
HpyCH4III	ACNGT	4 cut(s)	36, 189, 300, 460
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	3 cut(s)	527, 566, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 641
HpyF3I	CTNAG	2 cut(s)	311, 546
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	3 cut(s)	92, 254, 593
HspAI	GCGC	2 cut(s)	446, 492
Ksp22I	TGATCA	2 cut(s)	217, 304
Kzo9I	GATC	5 cut(s)	67, 217, 304, 314, 658
LguI	GCTCTTC	1 cut(s)	731
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	717
LweI	GCATC	2 cut(s)	82, 514
MaeI	CTAG	2 cut(s)	513, 521
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	5 cut(s)	69, 219, 306, 316, 660
MboI	GATC	5 cut(s)	67, 217, 304, 314, 658
MboII	GAAGA	4 cut(s)	369, 404, 718, 748
MflI	RGATCY	2 cut(s)	314, 658
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	3 cut(s)	147, 403, 412
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	4 cut(s)	172, 175, 409, 412
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	7 cut(s)	117, 129, 150, 171, 269, 366, 775
MslI	CAYNNNNRTG	2 cut(s)	225, 249
MspI	CCGG	2 cut(s)	370, 702
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	443, 641
NdeII	GATC	5 cut(s)	67, 217, 304, 314, 658
NlaIII	CATG	3 cut(s)	92, 254, 593
NmeAIII	GCCGAG	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	593
PciI	ACATGT	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	731
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	4, 373
PkrI	GCNGC	1 cut(s)	707
PpuMI	RGGWCCY	1 cut(s)	711
PscI	ACATGT	1 cut(s)	589
PshBI	ATTAAT	2 cut(s)	150, 171
Psp124BI	GAGCTC	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	711
PspPI	GGNCC	1 cut(s)	711
PspPPI	RGGWCCY	1 cut(s)	711
PsuI	RGATCY	2 cut(s)	314, 658
RsaI	GTAC	1 cut(s)	738
RsaNI	GTAC	1 cut(s)	737
RseI	CAYNNNNRTG	2 cut(s)	225, 249
SacI	GAGCTC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	731
SaqAI	TTAA	7 cut(s)	117, 129, 150, 171, 269, 366, 775
SatI	GCNGC	1 cut(s)	706
Sau3AI	GATC	5 cut(s)	67, 217, 304, 314, 658
Sau96I	GGNCC	1 cut(s)	711
SduI	GDGCHC	1 cut(s)	28
SfaNI	GCATC	2 cut(s)	82, 514
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	711
SmiMI	CAYNNNNRTG	2 cut(s)	225, 249
Sse9I	AATT	3 cut(s)	147, 403, 412
SspMI	CTAG	2 cut(s)	513, 521
SstI	GAGCTC	1 cut(s)	28
TaaI	ACNGT	4 cut(s)	36, 189, 300, 460
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	147, 403, 412
TatI	WGTACW	1 cut(s)	736
TfiI	GAWTC	2 cut(s)	4, 373
Tru1I	TTAA	7 cut(s)	117, 129, 150, 171, 269, 366, 775
Tru9I	TTAA	7 cut(s)	117, 129, 150, 171, 269, 366, 775
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	705
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	17, 272, 498
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	711
VspI	ATTAAT	2 cut(s)	150, 171
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	2 cut(s)	513, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.