Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001933.1

Orthogroup ID

OG0006035

Physical Location & Seq

Genomic Coordinates Reverse (-)

31408 .. 36736

Gene Structure 5329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001933.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

atggaagatttcaaagacgctgtgcgccaagctgccatttcttccggctacaacgagtccaaattggcagcgactatggccaagttcattatacatgcacctcgccaaaggtcacctttcaccagagctgcttacaaaacgcttgaaagcattggagctctggaacagtttatgttgaaacatcgaaaggattatgtggatcggcatcgcaccactgaacacgagagagatagcattgagcaggaagttaatgcttttattaaagcgtgccaagaacaaattaatgttctcaaaaatagcattaatgatgaggaggcacagtcaaagggctggcttggtatgagggctgatcactctaatgctgatactatagcacacaagcatggggtggttttgattttaagtgagagacttcattctgtcacatcacagtatgatcagctaagatccatacgcttccaagatacctttagcagagcaacaccaagaagaaaacttaaccggaatccaaaatcaaaatccgaagataccgccaattctaacaatttagaggtcagagaacctgaagcatttcaggcgcagtctctaaccgtccaacaacagctcttggatgatgaaacacgcgcccttcaggtagagttgactagccttctagatgcagttcaggaaactgaaactaagatggtggaaatgtctgcactaaatcaccttctgtctacacatgttctgcaacaacgtgaacaaatagagcaactatatgaccaagcagttgaagccacacacaatgtagatctcggcaacaaagagctttccaaagcaatccagagaaataccagcagcaggacctttcttttgctcttcctatttgtacttactttttccattctctttcttgattgtcttccttttcttcaagcggccaccgcccacctccagattcgtcatattcacctcttctcgatttccagactagacaagatgagaacaatggcagcagggacaaccttgcagctctcgtgcttctctgcaatgaatcgccacctccacctctcaagacgtccttcactcctttgcacaagcactcttcgcccaaagtctctgtctattcttgcaatgagtcttgaaagcggttcaaagaccaagattagtgctagttacacaggggatgcatcacctgcaaaatcggatcccattttagatgatgatcaagttgttcaacctaaacgtgcagccaagattcatgatttctgtttcggaattccatttggtgggatggttctgagtggtggacttcttggttttgttttcaccagaaatcctgccacactgggatccggcatcctgtttggaggggcattgctagcacttagcatctttagcttaaagatctggaggcaaggaaaatccagtttacccttcattgtaggacaagccgctttggctgcggttcttctatggaaaaaccttcagacctacgcagtgacaaagaaggtgtttccaacaggattttatgctgctgttagtgctgcaatgatctgcttctattcatatgtccttctctctggaggaaacccgccgccaaagaagttgaagacatcagcaactgtcgcatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006888 GO:0006890 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031201 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

Syntaxin-18_N

Protein Analysis

538

Amino Acids

59.86

Weight (kDa)

9.31

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51740 AT1G51740
fragaria_vesca	FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790
malus_domestica	MD02G1196300.v1.1 MD07G1124900.v1.1
prunus_persica	Prupe.2G152400_v2.0.a1 Prupe.2G152400_v2.0.a1
pyrus_communis	pycom02g15990 pycom07g11830
rosa_chinensis	RchiOBHm_Chr1g0351821
rosa_laevigata	RLG00000028379
rosa_multiflora	Rmu_sc0001933.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303510
rosa_rugosa	Rorug01G0221900 Rorug01G0222000
rosa_samantha	Rh1AG235900 Rh1BG206400 Rh1CG220400 Rh1DG233400 Rh3BG294600
rosa_wichuraiana	Rw1G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1183
AatII	GACGTC	1 cut(s)	1060
Acc36I	ACCTGC	1 cut(s)	1183
AccB7I	CCANNNNNTGG	1 cut(s)	1268
AccI	GTMKAC	1 cut(s)	716
AccII	CGCG	1 cut(s)	624
AciI	CCGC	8 cut(s)	531, 917, 924, 1128, 1434, 1445, 1574, 1577
AclWI	GGATC	6 cut(s)	207, 441, 1181, 1194, 1326, 1339
AcoI	YGGCCR	2 cut(s)	78, 918
AcsI	RAATTY	1 cut(s)	1257
AcuI	CTGAAG	3 cut(s)	585, 614, 1451
AcyI	GRCGYC	1 cut(s)	1057
AfaI	GTAC	1 cut(s)	870
AfiI	CCNNNNNNNGG	2 cut(s)	840, 1268
AflIII	ACRYGT	1 cut(s)	721
AgsI	TTSAA	9 cut(s)	13, 146, 178, 773, 914, 1124, 1134, 1217, 1591
AluBI	AGCT	8 cut(s)	32, 128, 158, 442, 604, 808, 1012, 1380
AluI	AGCT	8 cut(s)	32, 128, 158, 442, 604, 808, 1012, 1380
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	3 cut(s)	403, 588, 1101
AlwI	GGATC	6 cut(s)	207, 441, 1181, 1194, 1326, 1339
AlwNI	CAGNNNCTG	1 cut(s)	1604
AoxI	GGCC	2 cut(s)	78, 918
ApoI	RAATTY	1 cut(s)	1257
ArsI	GACNNNNNNTTYG	4 cut(s)	835, 867, 1085, 1117
AseI	ATTAAT	2 cut(s)	282, 303
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	3 cut(s)	27, 580, 626
AspS9I	GGNCC	1 cut(s)	843
AsuHPI	GGTGA	6 cut(s)	105, 112, 698, 941, 1164, 1300
AsuNHI	GCTAGC	1 cut(s)	1360
AvaII	GGWCC	1 cut(s)	843
BalI	TGGCCA	1 cut(s)	80
BamHI	GGATCC	2 cut(s)	1186, 1331
BanII	GRGCYC	1 cut(s)	160
BauI	CACGAG	2 cut(s)	221, 1015
BbsI	GAAGAC	2 cut(s)	893, 1598
Bbv12I	GWGCWC	1 cut(s)	160
BccI	CCATC	2 cut(s)	676, 1267
BclI	TGATCA	3 cut(s)	349, 436, 1204
BcoDI	GTCTC	3 cut(s)	403, 588, 1101
BfaI	CTAG	5 cut(s)	645, 653, 971, 1152, 1361
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	1183
BglI	GCCNNNNNGGC	1 cut(s)	1439
BglII	AGATCT	2 cut(s)	790, 1386
Bme18I	GGWCC	1 cut(s)	843
BmgT120I	GGNCC	1 cut(s)	843
BmiI	GGNNCC	2 cut(s)	1188, 1333
BmrI	ACTGGG	1 cut(s)	1337
BmsI	GCATC	6 cut(s)	214, 646, 1156, 1178, 1347, 1380
BmtI	GCTAGC	1 cut(s)	1364
BmuI	ACTGGG	1 cut(s)	1337
BpiI	GAAGAC	2 cut(s)	893, 1598
BpmI	CTGGAG	3 cut(s)	917, 1411, 1584
BpuEI	CTTGAG	1 cut(s)	1036
BsaBI	GATNNNNATC	2 cut(s)	204, 1203
BsaHI	GRCGYC	1 cut(s)	1057
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	840, 1268
Bse1I	ACTGG	2 cut(s)	1332, 1407
Bse3DI	GCAATG	4 cut(s)	1035, 1119, 1355, 1536
Bse8I	GATNNNNATC	2 cut(s)	204, 1203
BseGI	GGATG	4 cut(s)	616, 1171, 1278, 1338
BseJI	GATNNNNATC	2 cut(s)	204, 1203
BseLI	CCNNNNNNNGG	2 cut(s)	840, 1268
BseMI	GCAATG	4 cut(s)	1035, 1119, 1355, 1536
BseMII	CTCAG	1 cut(s)	1271
BseNI	ACTGG	2 cut(s)	1332, 1407
BseRI	GAGGAG	1 cut(s)	326
BsgI	GTGCAG	2 cut(s)	681, 1248
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	80, 920
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	3 cut(s)	45, 502, 1335
BslFI	GGGAC	1 cut(s)	1012
BslI	CCNNNNNNNGG	2 cut(s)	840, 1268
BsmAI	GTCTC	3 cut(s)	403, 588, 1101
BsmFI	GGGAC	1 cut(s)	1012
BsnI	GGCC	2 cut(s)	80, 920
Bsp1286I	GDGCHC	1 cut(s)	160
BspACI	CCGC	8 cut(s)	531, 917, 924, 1128, 1434, 1445, 1574, 1577
BspANI	GGCC	2 cut(s)	80, 920
BspCNI	CTCAG	1 cut(s)	1272
BspFNI	CGCG	1 cut(s)	624
BspHI	TCATGA	2 cut(s)	1240, 1613
BspLI	GGNNCC	2 cut(s)	1188, 1333
BspMI	ACCTGC	1 cut(s)	1183
BspOI	GCTAGC	1 cut(s)	1364
BspPI	GGATC	6 cut(s)	207, 441, 1181, 1194, 1326, 1339
BspQI	GCTCTTC	1 cut(s)	863
BsrDI	GCAATG	4 cut(s)	1035, 1119, 1355, 1536
BsrI	ACTGG	2 cut(s)	1332, 1407
BssNI	GRCGYC	1 cut(s)	1057
BssSI	CACGAG	2 cut(s)	221, 1015
Bst2BI	CACGAG	2 cut(s)	221, 1015
Bst4CI	ACNGT	5 cut(s)	168, 321, 432, 592, 1606
Bst6I	CTCTTC	3 cut(s)	863, 959, 1089
BstACI	GRCGYC	1 cut(s)	1057
BstAPI	GCANNNNNTGC	1 cut(s)	1175
BstC8I	GCNNGC	3 cut(s)	268, 332, 1362
BstDEI	CTNAG	4 cut(s)	443, 678, 1280, 1367
BstEII	GGTNACC	1 cut(s)	111
BstF5I	GGATG	4 cut(s)	616, 1171, 1278, 1338
BstFNI	CGCG	1 cut(s)	624
BstHHI	GCGC	3 cut(s)	27, 580, 626
BstMAI	GTCTC	3 cut(s)	403, 588, 1101
BstNSI	RCATGY	2 cut(s)	98, 725
BstPI	GGTNACC	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	624
BstV2I	GAAGAC	2 cut(s)	893, 1598
BstX2I	RGATCY	5 cut(s)	446, 790, 1186, 1331, 1386
BstYI	RGATCY	5 cut(s)	446, 790, 1186, 1331, 1386
BsuRI	GGCC	2 cut(s)	80, 920
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	616, 1171, 1278, 1338
BtsI	GCAGTG	1 cut(s)	1485
BtsIMutI	CAGTG	3 cut(s)	213, 1325, 1485
BveI	ACCTGC	1 cut(s)	1183
Cac8I	GCNNGC	3 cut(s)	268, 332, 1362
CaiI	CAGNNNCTG	1 cut(s)	1604
CciI	TCATGA	2 cut(s)	1240, 1613
CfoI	GCGC	3 cut(s)	27, 580, 626
Cfr13I	GGNCC	1 cut(s)	843
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	869
CviAII	CATG	5 cut(s)	95, 383, 722, 1241, 1614
CviQI	GTAC	1 cut(s)	869
DdeI	CTNAG	4 cut(s)	443, 678, 1280, 1367
EaeI	YGGCCR	2 cut(s)	78, 918
Eam1104I	CTCTTC	3 cut(s)	863, 959, 1089
EarI	CTCTTC	3 cut(s)	863, 959, 1089
Ecl136II	GAGCTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	843
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	3 cut(s)	585, 614, 1451
Eco91I	GGTNACC	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	843
EcoO65I	GGTNACC	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	1257
EcoT22I	ATGCAT	1 cut(s)	1171
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	5 cut(s)	98, 386, 725, 1244, 1617
FalI	AAGNNNNNCTT	4 cut(s)	100, 132, 1045, 1077
FaqI	GGGAC	1 cut(s)	1012
FatI	CATG	5 cut(s)	94, 382, 721, 1240, 1613
FauI	CCCGC	1 cut(s)	1581
FauNDI	CATATG	1 cut(s)	1549
FbaI	TGATCA	3 cut(s)	349, 436, 1204
FblI	GTMKAC	1 cut(s)	716
FokI	GGATG	4 cut(s)	623, 1178, 1285, 1325
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	5 cut(s)	645, 653, 971, 1152, 1361
GlaI	GCGC	3 cut(s)	26, 579, 625
GsuI	CTGGAG	3 cut(s)	917, 1411, 1584
HaeIII	GGCC	2 cut(s)	80, 920
HapII	CCGG	3 cut(s)	45, 502, 1335
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	3 cut(s)	27, 580, 626
Hin1I	GRCGYC	1 cut(s)	1057
Hin1II	CATG	5 cut(s)	98, 386, 725, 1244, 1617
Hin6I	GCGC	3 cut(s)	25, 578, 624
HinP1I	GCGC	3 cut(s)	25, 578, 624
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	6 cut(s)	56, 505, 937, 1033, 1117, 1237
HpaII	CCGG	3 cut(s)	45, 502, 1335
HphI	GGTGA	6 cut(s)	105, 112, 698, 941, 1164, 1300
Hpy166II	GTNNAC	5 cut(s)	642, 717, 740, 1289, 1412
Hpy188I	TCNGA	6 cut(s)	523, 557, 1186, 1256, 1281, 1470
Hpy8I	GTNNAC	5 cut(s)	642, 717, 740, 1289, 1412
HpyAV	CCTTC	8 cut(s)	638, 659, 719, 1071, 1426, 1475, 1483, 1565
HpyCH4III	ACNGT	5 cut(s)	168, 321, 432, 592, 1606
HpyCH4IV	ACGT	3 cut(s)	736, 1057, 1225
HpyF3I	CTNAG	4 cut(s)	443, 678, 1280, 1367
HpySE526I	ACGT	3 cut(s)	736, 1057, 1225
Hsp92I	GRCGYC	1 cut(s)	1057
Hsp92II	CATG	5 cut(s)	98, 386, 725, 1244, 1617
HspAI	GCGC	3 cut(s)	25, 578, 624
Ksp22I	TGATCA	3 cut(s)	349, 436, 1204
LguI	GCTCTTC	1 cut(s)	863
LmnI	GCTCC	1 cut(s)	155
LweI	GCATC	6 cut(s)	214, 646, 1156, 1178, 1347, 1380
MaeI	CTAG	5 cut(s)	645, 653, 971, 1152, 1361
MaeII	ACGT	3 cut(s)	736, 1057, 1225
MaeIII	GTNAC	4 cut(s)	111, 421, 1154, 1480
MflI	RGATCY	5 cut(s)	446, 790, 1186, 1331, 1386
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	5 cut(s)	62, 279, 535, 544, 1257
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	65, 1126
MmeI	TCCRAC	2 cut(s)	619, 1523
Mox20I	TGGCCA	1 cut(s)	80
Mph1103I	ATGCAT	1 cut(s)	1171
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	7 cut(s)	249, 261, 282, 303, 401, 498, 1382
MslI	CAYNNNNRTG	2 cut(s)	357, 381
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	3 cut(s)	45, 502, 1335
MvnI	CGCG	1 cut(s)	624
NdeI	CATATG	1 cut(s)	1549
NheI	GCTAGC	1 cut(s)	1360
NlaIII	CATG	5 cut(s)	98, 386, 725, 1244, 1617
NlaIV	GGNNCC	2 cut(s)	1188, 1333
NmeAIII	GCCGAG	1 cut(s)	774
NmuCI	GTSAC	3 cut(s)	111, 421, 1480
NsiI	ATGCAT	1 cut(s)	1171
NspI	RCATGY	2 cut(s)	98, 725
PagI	TCATGA	2 cut(s)	1240, 1613
PaqCI	CACCTGC	1 cut(s)	1183
PciI	ACATGT	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	863
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	4 cut(s)	505, 937, 1033, 1237
PflMI	CCANNNNNTGG	1 cut(s)	1268
PleI	GAGTC	2 cut(s)	64, 1125
PpsI	GAGTC	2 cut(s)	64, 1125
PpuMI	RGGWCCY	1 cut(s)	843
PscI	ACATGT	1 cut(s)	721
PshBI	ATTAAT	2 cut(s)	282, 303
Psp124BI	GAGCTC	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	843
PspEI	GGTNACC	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	1188, 1333
PspPI	GGNCC	1 cut(s)	843
PspPPI	RGGWCCY	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	1604
PsuI	RGATCY	5 cut(s)	446, 790, 1186, 1331, 1386
RsaI	GTAC	1 cut(s)	870
RsaNI	GTAC	1 cut(s)	869
RseI	CAYNNNNRTG	2 cut(s)	357, 381
SacI	GAGCTC	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	863
SaqAI	TTAA	7 cut(s)	249, 261, 282, 303, 401, 498, 1382
Sau96I	GGNCC	1 cut(s)	843
SchI	GAGTC	2 cut(s)	65, 1126
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	6 cut(s)	214, 646, 1156, 1178, 1347, 1380
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	843
SmiMI	CAYNNNNRTG	2 cut(s)	357, 381
SmlI	CTYRAG	1 cut(s)	1051
SmoI	CTYRAG	1 cut(s)	1051
Sse9I	AATT	5 cut(s)	62, 279, 535, 544, 1257
SsiI	CCGC	8 cut(s)	531, 917, 924, 1128, 1434, 1445, 1574, 1577
SspMI	CTAG	5 cut(s)	645, 653, 971, 1152, 1361
SstI	GAGCTC	1 cut(s)	160
TaaI	ACNGT	5 cut(s)	168, 321, 432, 592, 1606
TaiI	ACGT	3 cut(s)	739, 1060, 1228
TaqI	TCGA	2 cut(s)	184, 959
TasI	AATT	5 cut(s)	62, 279, 535, 544, 1257
TatI	WGTACW	1 cut(s)	868
TauI	GCSGC	3 cut(s)	920, 1436, 1579
TfiI	GAWTC	4 cut(s)	505, 937, 1033, 1237
Tru1I	TTAA	7 cut(s)	249, 261, 282, 303, 401, 498, 1382
Tru9I	TTAA	7 cut(s)	249, 261, 282, 303, 401, 498, 1382
TscAI	CASTG	3 cut(s)	220, 1332, 1485
TseFI	GTSAC	3 cut(s)	111, 421, 1480
Tsp45I	GTSAC	3 cut(s)	111, 421, 1480
TspDTI	ATGAA	7 cut(s)	76, 404, 630, 1046, 1229, 1408, 1536
TspRI	CASTG	3 cut(s)	220, 1332, 1485
Van91I	CCANNNNNTGG	1 cut(s)	1268
VpaK11BI	GGWCC	1 cut(s)	843
VspI	ATTAAT	2 cut(s)	282, 303
XapI	RAATTY	1 cut(s)	1257
XbaI	TCTAGA	1 cut(s)	652
XceI	RCATGY	2 cut(s)	98, 725
XmiI	GTMKAC	1 cut(s)	716
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	5 cut(s)	645, 653, 971, 1152, 1361
ZraI	GACGTC	1 cut(s)	1058
Zsp2I	ATGCAT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.