Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006035

Physical Location & Seq

Genomic Coordinates Forward (+)

20708824 .. 20712071

Gene Structure 3248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G152400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCCAAAGTCCGGGATAGGATGGAAGATTTCAAAGATGCTGTGCGCCACTCTGCTCTCTCTTTGGGTTACAATGAGTCCAAATTGGCAGCCATTATGGCAAAATTTATTATACATGCACCCCGCCAGAGGTCACCTTTCACCAGAGCCGCTCTCAAGACGATGGAAAGCATTGGAGCTCTGGAACAGTTTATGTTGAAACATAGAAAAGATTATGTGGATCTGCATCGGACCACTGAACAGGAGAGAGATAGCATTGAGCATGAAGTAAGTGCTTTTATCAAAGCATGTCAAGAACAAATTGATGTTCTCAAAAATAGCATTAATGATGACGAGGCAAACTCAAAGGGATGGCTTGGCATTAGGACTGATTACTCTAATGCTGATACTATAGCACACAAACATGGTGTGGTTTTGATTTTAAGTGAGAGACTCCATTCAGTCACTTCACAGTTTGATAAGCTAAGAGCCATACGCTTCCAAGATACCATTAATAGAGCAACACCTAGAAGAAAACTTAAGCGGATTGCAAATTCAGAACCTGCAGATGCTTCTAACTCCAACAATTTGGAGCTCAGGGAACCTAATGAACTTCAACCTGAGCCTCTAACAGTCCAACAGCAACTCTTGGACGATGAAACACGTGCCCTTCAGGTGGAGCTGACTAACCTTCTAGATGCAGTTCAGCAAACTGAAACTAAGATGGTGGAAATGTCTGCGCTGAATCACCTTATGTCCACACACGTGCTGCAACAAGCTCAACAGATAGAGCAACTCTATGATCAGGCAGTTGAAGCAACGAAGAATGTAGAGCTTGGAAACAAAGAGATCTCAAAAGCAATCCAGCGGAACAACAGCAGCAGGACGTTTCTTTTGCTTTTCATCGTTTTATTAACTTTTTCGGTTCTCTTTCTCGATTGGTATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006888 GO:0006890 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031201 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

Syntaxin-18_N

Protein Analysis

310

Amino Acids

35.45

Weight (kDa)

6.23

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51740 AT1G51740
fragaria_vesca	FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790 FvH4_7g12790
malus_domestica	MD02G1196300.v1.1 MD07G1124900.v1.1
prunus_persica	Prupe.2G152400_v2.0.a1 Prupe.2G152400_v2.0.a1
pyrus_communis	pycom02g15990 pycom07g11830
rosa_chinensis	RchiOBHm_Chr1g0351821
rosa_laevigata	RLG00000028379
rosa_multiflora	Rmu_sc0001933.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303510
rosa_rugosa	Rorug01G0221900 Rorug01G0222000
rosa_samantha	Rh1AG235900 Rh1BG206400 Rh1CG220400 Rh1DG233400 Rh3BG294600
rosa_wichuraiana	Rw1G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AccBSI	CCGCTC	1 cut(s)	152
AciI	CCGC	4 cut(s)	124, 150, 523, 847
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	104, 532
AcuI	CTGAAG	1 cut(s)	635
AcvI	CACGTG	2 cut(s)	644, 745
AfiI	CCNNNNNNNGG	3 cut(s)	12, 129, 655
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	2 cut(s)	641, 742
AgsI	TTSAA	4 cut(s)	34, 199, 596, 794
AleI	CACNNNNGTG	1 cut(s)	743
AluBI	AGCT	6 cut(s)	179, 463, 574, 661, 758, 814
AluI	AGCT	6 cut(s)	179, 463, 574, 661, 758, 814
Alw21I	GWGCWC	2 cut(s)	181, 576
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	228
AlwNI	CAGNNNCTG	1 cut(s)	542
ApeKI	GCWGC	3 cut(s)	89, 748, 858
ApoI	RAATTY	2 cut(s)	104, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	856, 888
AseI	ATTAAT	2 cut(s)	324, 492
AspLEI	GCGC	2 cut(s)	48, 721
AspS9I	GGNCC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	126, 133, 719
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	649
BanII	GRGCYC	2 cut(s)	181, 576
BbrPI	CACGTG	2 cut(s)	644, 745
Bbv12I	GWGCWC	2 cut(s)	181, 576
BbvI	GCAGC	3 cut(s)	101, 735, 870
BccI	CCATC	4 cut(s)	16, 157, 345, 697
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	2 cut(s)	507, 674
BfmI	CTRYAG	2 cut(s)	390, 543
BfrI	CTTAAG	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	550
BglI	GCCNNNNNGGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	828
BisI	GCNGC	4 cut(s)	90, 150, 749, 859
BlsI	GCNGC	4 cut(s)	91, 151, 750, 860
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	4 cut(s)	28, 235, 538, 667
BplI	GAGNNNNNCTC	4 cut(s)	138, 170, 326, 358
Bpu10I	CCTNAGC	2 cut(s)	575, 600
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	14
BsaAI	YACGTR	2 cut(s)	644, 745
BsaBI	GATNNNNATC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 129, 655
Bse8I	GATNNNNATC	1 cut(s)	225
BseGI	GGATG	2 cut(s)	27, 356
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	12, 129, 655
BseMII	CTCAG	2 cut(s)	589, 591
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	3 cut(s)	101, 735, 870
BsiHKAI	GWGCWC	2 cut(s)	181, 576
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	3 cut(s)	12, 129, 655
BsmAI	GTCTC	1 cut(s)	424
Bsp1286I	GDGCHC	3 cut(s)	181, 576, 649
Bsp143I	GATC	3 cut(s)	220, 781, 828
BspACI	CCGC	4 cut(s)	124, 150, 523, 847
BspCNI	CTCAG	2 cut(s)	588, 592
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	1 cut(s)	228
BspTI	CTTAAG	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	152
BssMI	GATC	3 cut(s)	220, 781, 828
Bst4CI	ACNGT	3 cut(s)	189, 453, 613
BstAFI	CTTAAG	1 cut(s)	518
BstBAI	YACGTR	2 cut(s)	644, 745
BstDEI	CTNAG	4 cut(s)	464, 575, 600, 699
BstEII	GGTNACC	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	27, 356
BstHHI	GCGC	2 cut(s)	48, 721
BstKTI	GATC	3 cut(s)	223, 784, 831
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	3 cut(s)	220, 781, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 794
BstNSI	RCATGY	2 cut(s)	119, 291
BstPI	GGTNACC	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	2 cut(s)	390, 543
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	101, 735, 870
BstX2I	RGATCY	2 cut(s)	220, 828
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	2 cut(s)	220, 828
BtsCI	GGATG	2 cut(s)	27, 356
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	550
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	2 cut(s)	48, 721
Cfr13I	GGNCC	1 cut(s)	231
CviAII	CATG	4 cut(s)	116, 263, 288, 404
DdeI	CTNAG	4 cut(s)	464, 575, 600, 699
DpnI	GATC	3 cut(s)	222, 783, 830
DpnII	GATC	3 cut(s)	220, 781, 828
Ecl136II	GAGCTC	2 cut(s)	179, 574
Eco24I	GRGCYC	2 cut(s)	181, 576
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	2 cut(s)	179, 574
Eco57I	CTGAAG	1 cut(s)	635
Eco72I	CACGTG	2 cut(s)	644, 745
Eco91I	GGTNACC	1 cut(s)	132
EcoICRI	GAGCTC	2 cut(s)	179, 574
EcoO65I	GGTNACC	1 cut(s)	132
EcoT38I	GRGCYC	2 cut(s)	181, 576
FaeI	CATG	4 cut(s)	119, 266, 291, 407
FatI	CATG	4 cut(s)	115, 262, 287, 403
FauI	CCCGC	1 cut(s)	131
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	90, 150, 749, 859
FokI	GGATG	2 cut(s)	34, 363
FriOI	GRGCYC	2 cut(s)	181, 576
Fsp4HI	GCNGC	4 cut(s)	90, 150, 749, 859
FspBI	CTAG	2 cut(s)	507, 674
GlaI	GCGC	2 cut(s)	47, 720
GluI	GCNGC	4 cut(s)	90, 150, 749, 859
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	2 cut(s)	48, 721
Hin1II	CATG	4 cut(s)	119, 266, 291, 407
Hin6I	GCGC	2 cut(s)	46, 719
HinP1I	GCGC	2 cut(s)	46, 719
HinfI	GANTC	3 cut(s)	77, 432, 724
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	3 cut(s)	126, 133, 719
Hpy166II	GTNNAC	1 cut(s)	738
Hpy188I	TCNGA	2 cut(s)	231, 538
Hpy188III	TCNNGA	5 cut(s)	157, 182, 293, 674, 914
Hpy8I	GTNNAC	1 cut(s)	738
HpyAV	CCTTC	2 cut(s)	659, 680
HpyCH4III	ACNGT	3 cut(s)	189, 453, 613
HpyCH4IV	ACGT	3 cut(s)	643, 744, 866
HpyCH4V	TGCA	6 cut(s)	119, 226, 530, 545, 680, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 794
HpyF3I	CTNAG	4 cut(s)	464, 575, 600, 699
HpySE526I	ACGT	3 cut(s)	643, 744, 866
Hsp92II	CATG	4 cut(s)	119, 266, 291, 407
HspAI	GCGC	2 cut(s)	46, 719
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	220, 781, 828
LmnI	GCTCC	3 cut(s)	176, 571, 658
Lsp1109I	GCAGC	3 cut(s)	101, 735, 870
LweI	GCATC	4 cut(s)	28, 235, 538, 667
MaeI	CTAG	2 cut(s)	507, 674
MaeII	ACGT	3 cut(s)	643, 744, 866
MaeIII	GTNAC	3 cut(s)	68, 132, 442
MalI	GATC	3 cut(s)	222, 783, 830
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	3 cut(s)	220, 781, 828
MboII	GAAGA	3 cut(s)	38, 522, 814
MflI	RGATCY	2 cut(s)	220, 828
MhlI	GDGCHC	3 cut(s)	181, 576, 649
MluCI	AATT	6 cut(s)	83, 104, 300, 532, 565, 925
MlyI	GAGTC	2 cut(s)	86, 426
MmeI	TCCRAC	2 cut(s)	585, 640
MnlI	CCTC	3 cut(s)	123, 328, 615
MseI	TTAA	5 cut(s)	324, 422, 492, 519, 893
MslI	CAYNNNNRTG	2 cut(s)	402, 743
MspA1I	CMGCKG	1 cut(s)	847
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	98, 794
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	3 cut(s)	220, 781, 828
NlaIII	CATG	4 cut(s)	119, 266, 291, 407
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	132, 442
NspI	RCATGY	2 cut(s)	119, 291
OliI	CACNNNNGTG	1 cut(s)	743
PfeI	GAWTC	1 cut(s)	724
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	4 cut(s)	91, 151, 750, 860
PleI	GAGTC	2 cut(s)	85, 426
PmaCI	CACGTG	2 cut(s)	644, 745
PmlI	CACGTG	2 cut(s)	644, 745
PpsI	GAGTC	2 cut(s)	85, 426
Ppu21I	YACGTR	2 cut(s)	644, 745
PshBI	ATTAAT	2 cut(s)	324, 492
Psp124BI	GAGCTC	2 cut(s)	181, 576
PspCI	CACGTG	2 cut(s)	644, 745
PspEI	GGTNACC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	220, 828
RseI	CAYNNNNRTG	2 cut(s)	402, 743
SacI	GAGCTC	2 cut(s)	181, 576
SaqAI	TTAA	5 cut(s)	324, 422, 492, 519, 893
SatI	GCNGC	4 cut(s)	90, 150, 749, 859
Sau3AI	GATC	3 cut(s)	220, 781, 828
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	2 cut(s)	86, 426
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	3 cut(s)	181, 576, 649
SfaNI	GCATC	4 cut(s)	28, 235, 538, 667
SfcI	CTRYAG	2 cut(s)	390, 543
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	402, 743
SmlI	CTYRAG	2 cut(s)	155, 518
SmoI	CTYRAG	2 cut(s)	155, 518
Sse9I	AATT	6 cut(s)	83, 104, 300, 532, 565, 925
SsiI	CCGC	4 cut(s)	124, 150, 523, 847
SspMI	CTAG	2 cut(s)	507, 674
SstI	GAGCTC	2 cut(s)	181, 576
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	189, 453, 613
TaiI	ACGT	3 cut(s)	646, 747, 869
TaqI	TCGA	1 cut(s)	915
TasI	AATT	6 cut(s)	83, 104, 300, 532, 565, 925
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	724
Tru1I	TTAA	5 cut(s)	324, 422, 492, 519, 893
Tru9I	TTAA	5 cut(s)	324, 422, 492, 519, 893
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	132, 442
TseI	GCWGC	3 cut(s)	89, 748, 858
Tsp45I	GTSAC	2 cut(s)	132, 442
TspDTI	ATGAA	4 cut(s)	279, 603, 651, 871
TspRI	CASTG	1 cut(s)	241
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	231
VspI	ATTAAT	2 cut(s)	324, 492
XapI	RAATTY	2 cut(s)	104, 532
XbaI	TCTAGA	1 cut(s)	673
XceI	RCATGY	2 cut(s)	119, 291
XspI	CTAG	2 cut(s)	507, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.