Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005263

Physical Location & Seq

Genomic Coordinates Forward (+)

19204512 .. 19206586

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGAGTTTCTGCAAATTGGTTTCTTTTGTTTTGATCCTTCACTTACTAAACTCGTGTCTGATTTCATGTTCCTCGAATGATTTGTCTCAAATTCCTAAAAATTTCCTTAGTCTAGCTAAAAGAGAAGATTTTTTCGATTGGATGGTTGGAATAAGAAGGAGGATCCACGAGAACCCAGAGTTAGGTTACGAGGAAGTAGAGACATCTAAGCTAGTCAAGACAGAATTGGACAAGATGGGTGTGTCTTATAAGAATCCAGTTGCTGTAACTGGTGTTATTGGATATGTTGGAACTGGCCATGCCCCCTTTGTTGCTTTGAGGGCTGATATGGATGCACTTCCTATTCAGGAAATGGTGGAATGGGAACACAAGAGTAAGATTCCAGGGAAGATGCACGCTTGCGGACATGACGCTCACACTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACACCAAGAAGAGCTACAGGGTACAGTGATTCTGGTTTTCCAACCAGCTGAGGAAGGAGGAGCAGGTGCAAAGAAAATCGTGGAGGCTGGAGTATTGGAGAATGTGGGTGCAATCTTTGGATTACATGTTTCGAATCTATTGGGATTAGGTCAACTGAGCTCAAGAGAGGGTCTATTGATGGCTGGTAGTGGACGTTTCAAAGCTACGATAAGCGGGAAAGGAGGTCATGCAGCTCTTCCTCAATTCGCCATAGATCCAGTATTGGCAGCTTCAAATGTTATTCTGAGCTTACAACACCTCGTTTCACGAGAGGCAGATCCTTTAGACTCGCAGGTGGTTACAGTTGCTACATTTGAAGGCAGTGATGCTTTTAATGTCATTCCCGACTCTGTTACTATCGGTGGCACATTCCGAGCCCTTTTACCTAAAAGTTTTGAGCAACTCAAGCAAAGAATTGTTCAGGTTATCACAACGCAAGCAAGCGTAAATATGTGTAATGCAACAGTTGACTTTCTTGAAGATGAGACTCCTCCTTTCCCGCCGACTGTGAACAATAAAACCTTGCACCTGTTTTACAAGAACGTTTCAGTGGATATGTTAGGGATTGAGAATTATGTTGAGACGCTACCAGTGATGGTATCAGAGGATTTTGCTTTCTACCAACAAGCAATCCCGGGACATTTTAGCTTTGTTGGGATGCAGAACAAATCTCATTCACCAATGGCGAACCCTCACTCTCCGTTTTTTGAAGTTAATGAAGAATTACTCCCTTATGGTGCTTCCCTTCTTGCTTCTTTGGCCACAAGATATCTTCTTGACTCATCTTCATCGCCAAATAAAGATGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009850 GO:0009987 GO:0010112 GO:0010178 GO:0010179 GO:0010817 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0031347 GO:0032101 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0065008 GO:0071944 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

435

Amino Acids

47.38

Weight (kDa)

5.45

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	105 - 420	1.7e-42	Peptidase family M20/M25/M40
M20_dimer	PF07687	214 - 312	3e-12	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51760 AT1G51780
fragaria_vesca	FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830
malus_domestica	MD09G1197800.v1.1 MD17G1178700.v1.1
prunus_persica	Prupe.3G053700_v2.0.a1
pyrus_communis	pycom17g18780
rosa_chinensis	RchiOBHm_Chr2g0142041
rosa_laevigata	RLG00000019947
rosa_multiflora	Rmu_sc0004757.1_g000007
rosa_roxburghii	Rroxscaffold_2G00103650
rosa_rugosa	Rorug02G0369800 Rorug02G0369900 Rorug02G0370000
rosa_samantha	Rh2AG422500 Rh2BG432700 Rh2CG409400 Rh2DG442400
rosa_wichuraiana	Rw2G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AarI	CACCTGC	2 cut(s)	509, 778
Acc36I	ACCTGC	2 cut(s)	509, 778
AciI	CCGC	3 cut(s)	402, 669, 995
AclI	AACGTT	1 cut(s)	1038
AclWI	GGATC	5 cut(s)	28, 157, 170, 704, 767
AcoI	YGGCCR	2 cut(s)	295, 1254
AcsI	RAATTY	2 cut(s)	90, 100
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	5 cut(s)	655, 729, 812, 974, 1205
AjnI	CCWGG	1 cut(s)	382
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	4 cut(s)	90, 194, 974, 1070
AlwI	GGATC	5 cut(s)	28, 157, 170, 704, 767
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	1129
AoxI	GGCC	2 cut(s)	295, 1254
ApeKI	GCWGC	3 cut(s)	437, 686, 722
ApoI	RAATTY	2 cut(s)	90, 100
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AsuC2I	CCSGG	2 cut(s)	1130, 1131
AsuHPI	GGTGA	1 cut(s)	1164
AsuII	TTCGAA	1 cut(s)	587
AvaI	CYCGRG	1 cut(s)	1129
BalI	TGGCCA	2 cut(s)	297, 1256
BamHI	GGATCC	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	617, 874
BauI	CACGAG	3 cut(s)	52, 167, 762
Bbv12I	GWGCWC	1 cut(s)	617
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	424, 698, 734
BccI	CCATC	4 cut(s)	136, 229, 628, 1084
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	1130, 1131
BcoDI	GTCTC	4 cut(s)	90, 194, 974, 1070
BfaI	CTAG	2 cut(s)	113, 212
BfmI	CTRYAG	1 cut(s)	470
BfuAI	ACCTGC	2 cut(s)	509, 778
BisI	GCNGC	3 cut(s)	438, 687, 723
BlsI	GCNGC	3 cut(s)	439, 688, 724
Bme1390I	CCNGG	3 cut(s)	384, 1130, 1131
BmeT110I	CYCGRG	1 cut(s)	1129
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	3 cut(s)	384, 1130, 1131
BmsI	GCATC	5 cut(s)	322, 381, 414, 811, 1143
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	587
BpuEI	CTTGAG	2 cut(s)	601, 884
BpuMI	CCSGG	2 cut(s)	1130, 1131
BsaJI	CCNNGG	3 cut(s)	383, 430, 1129
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	5 cut(s)	257, 274, 298, 713, 1085
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	383, 430, 1129
BseGI	GGATG	3 cut(s)	147, 337, 1158
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	3 cut(s)	495, 602, 731
BseNI	ACTGG	5 cut(s)	257, 274, 298, 713, 1085
BseRI	GAGGAG	3 cut(s)	419, 528, 975
BseXI	GCAGC	3 cut(s)	424, 698, 734
BshFI	GGCC	2 cut(s)	297, 1256
BsiHKAI	GWGCWC	1 cut(s)	617
BsiHKCI	CYCGRG	1 cut(s)	1129
BsiSI	CCGG	1 cut(s)	1130
BslFI	GGGAC	1 cut(s)	1146
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	4 cut(s)	90, 194, 974, 1070
BsmBI	CGTCTC	1 cut(s)	1070
BsmFI	GGGAC	1 cut(s)	1146
BsnI	GGCC	2 cut(s)	297, 1256
BsoBI	CYCGRG	1 cut(s)	1129
Bsp119I	TTCGAA	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	617, 874
Bsp143I	GATC	4 cut(s)	33, 162, 709, 772
BspACI	CCGC	3 cut(s)	402, 669, 995
BspANI	GGCC	2 cut(s)	297, 1256
BspCNI	CTCAG	3 cut(s)	496, 603, 732
BspLI	GGNNCC	1 cut(s)	164
BspMI	ACCTGC	2 cut(s)	509, 778
BspPI	GGATC	5 cut(s)	28, 157, 170, 704, 767
BspQI	GCTCTTC	2 cut(s)	459, 696
BspT104I	TTCGAA	1 cut(s)	587
BsrI	ACTGG	5 cut(s)	257, 274, 298, 713, 1085
BssECI	CCNNGG	3 cut(s)	383, 430, 1129
BssMI	GATC	4 cut(s)	33, 162, 709, 772
BssSI	CACGAG	3 cut(s)	52, 167, 762
Bst2BI	CACGAG	3 cut(s)	52, 167, 762
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	4 cut(s)	481, 799, 961, 1003
Bst6I	CTCTTC	2 cut(s)	459, 696
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	4 cut(s)	396, 400, 933, 937
BstDEI	CTNAG	5 cut(s)	107, 207, 504, 611, 740
BstF5I	GGATG	3 cut(s)	147, 337, 1158
BstKTI	GATC	4 cut(s)	36, 165, 712, 775
BstMAI	GTCTC	4 cut(s)	90, 194, 974, 1070
BstMBI	GATC	4 cut(s)	33, 162, 709, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 901, 1253
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	3 cut(s)	382, 1128, 1129
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	424, 698, 734
BstX2I	RGATCY	3 cut(s)	162, 709, 772
BstYI	RGATCY	3 cut(s)	162, 709, 772
BsuRI	GGCC	2 cut(s)	297, 1256
BtgZI	GCGATG	1 cut(s)	1269
BtsCI	GGATG	3 cut(s)	147, 337, 1158
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	4 cut(s)	486, 823, 1050, 1092
BveI	ACCTGC	2 cut(s)	509, 778
Cac8I	GCNNGC	4 cut(s)	396, 400, 933, 937
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr9I	CCCGGG	1 cut(s)	1129
CseI	GACGC	2 cut(s)	419, 1087
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	5 cut(s)	66, 299, 407, 581, 683
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	5 cut(s)	107, 207, 504, 611, 740
DpnI	GATC	4 cut(s)	35, 164, 711, 774
DpnII	GATC	4 cut(s)	33, 162, 709, 772
EaeI	YGGCCR	2 cut(s)	295, 1254
Eam1104I	CTCTTC	2 cut(s)	459, 696
EarI	CTCTTC	2 cut(s)	459, 696
Ecl136II	GAGCTC	1 cut(s)	615
Eco24I	GRGCYC	2 cut(s)	617, 874
Eco32I	GATATC	1 cut(s)	1265
Eco53kI	GAGCTC	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	1129
EcoICRI	GAGCTC	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	1265
EcoT38I	GRGCYC	2 cut(s)	617, 874
Esp3I	CGTCTC	1 cut(s)	1070
FaeI	CATG	5 cut(s)	69, 302, 410, 584, 686
FalI	AAGNNNNNCTT	1 cut(s)	1287
FaqI	GGGAC	1 cut(s)	1146
FatI	CATG	5 cut(s)	65, 298, 406, 580, 682
FauI	CCCGC	2 cut(s)	662, 1002
Fnu4HI	GCNGC	3 cut(s)	438, 687, 723
FokI	GGATG	3 cut(s)	154, 344, 1165
FriOI	GRGCYC	2 cut(s)	617, 874
Fsp4HI	GCNGC	3 cut(s)	438, 687, 723
FspBI	CTAG	2 cut(s)	113, 212
GluI	GCNGC	3 cut(s)	438, 687, 723
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	297, 1256
HapII	CCGG	1 cut(s)	1130
HgaI	GACGC	2 cut(s)	419, 1087
Hin1II	CATG	5 cut(s)	69, 302, 410, 584, 686
HincII	GTYRAC	2 cut(s)	608, 964
HindII	GTYRAC	2 cut(s)	608, 964
HinfI	GANTC	8 cut(s)	253, 379, 484, 589, 782, 842, 982, 1274
HpaII	CCGG	1 cut(s)	1130
HphI	GGTGA	1 cut(s)	1164
Hpy166II	GTNNAC	4 cut(s)	608, 647, 964, 1006
Hpy188I	TCNGA	4 cut(s)	60, 741, 869, 1099
Hpy188III	TCNNGA	7 cut(s)	217, 347, 618, 762, 839, 971, 1271
Hpy8I	GTNNAC	4 cut(s)	608, 647, 964, 1006
HpyAV	CCTTC	5 cut(s)	47, 150, 503, 806, 1250
HpyCH4III	ACNGT	4 cut(s)	481, 799, 961, 1003
HpyCH4IV	ACGT	2 cut(s)	649, 1038
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 901, 1253
HpyF3I	CTNAG	5 cut(s)	107, 207, 504, 611, 740
HpySE526I	ACGT	2 cut(s)	649, 1038
Hsp92II	CATG	5 cut(s)	69, 302, 410, 584, 686
Kzo9I	GATC	4 cut(s)	33, 162, 709, 772
LguI	GCTCTTC	2 cut(s)	459, 696
LmnI	GCTCC	2 cut(s)	432, 515
Lsp1109I	GCAGC	3 cut(s)	424, 698, 734
LweI	GCATC	5 cut(s)	322, 381, 414, 811, 1143
MaeI	CTAG	2 cut(s)	113, 212
MaeII	ACGT	2 cut(s)	649, 1038
MaeIII	GTNAC	4 cut(s)	185, 265, 793, 847
MalI	GATC	4 cut(s)	35, 164, 711, 774
MboI	GATC	4 cut(s)	33, 162, 709, 772
MboII	GAAGA	8 cut(s)	137, 400, 476, 683, 986, 1226, 1259, 1272
MflI	RGATCY	3 cut(s)	162, 709, 772
MhlI	GDGCHC	2 cut(s)	617, 874
MlsI	TGGCCA	2 cut(s)	297, 1256
MluCI	AATT	8 cut(s)	14, 90, 100, 224, 698, 909, 1066, 1217
MluNI	TGGCCA	2 cut(s)	297, 1256
MlyI	GAGTC	4 cut(s)	776, 836, 976, 1268
MmeI	TCCRAC	3 cut(s)	127, 268, 520
Mox20I	TGGCCA	2 cut(s)	297, 1256
MscI	TGGCCA	2 cut(s)	297, 1256
MseI	TTAA	2 cut(s)	828, 1209
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	2 cut(s)	297, 1256
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	1130
MspR9I	CCNGG	3 cut(s)	384, 1130, 1131
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	320, 901, 1253
NciI	CCSGG	2 cut(s)	1130, 1131
NdeII	GATC	4 cut(s)	33, 162, 709, 772
NlaIII	CATG	5 cut(s)	69, 302, 410, 584, 686
NlaIV	GGNNCC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	584
NspV	TTCGAA	1 cut(s)	587
PaqCI	CACCTGC	2 cut(s)	509, 778
PciI	ACATGT	1 cut(s)	580
PciSI	GCTCTTC	2 cut(s)	459, 696
PfeI	GAWTC	4 cut(s)	253, 379, 484, 589
PkrI	GCNGC	3 cut(s)	439, 688, 724
PleI	GAGTC	4 cut(s)	776, 836, 976, 1268
PpsI	GAGTC	4 cut(s)	776, 836, 976, 1268
PscI	ACATGT	1 cut(s)	580
PsiI	TTATAA	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	617
Psp1406I	AACGTT	1 cut(s)	1038
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	3 cut(s)	162, 709, 772
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
RseI	CAYNNNNRTG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	617
SapI	GCTCTTC	2 cut(s)	459, 696
SaqAI	TTAA	2 cut(s)	828, 1209
SatI	GCNGC	3 cut(s)	438, 687, 723
Sau3AI	GATC	4 cut(s)	33, 162, 709, 772
SchI	GAGTC	4 cut(s)	776, 836, 976, 1268
ScrFI	CCNGG	3 cut(s)	384, 1130, 1131
SduI	GDGCHC	2 cut(s)	617, 874
SfaNI	GCATC	5 cut(s)	322, 381, 414, 811, 1143
SfcI	CTRYAG	1 cut(s)	470
SfuI	TTCGAA	1 cut(s)	587
SmaI	CCCGGG	1 cut(s)	1131
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	2 cut(s)	616, 899
SmoI	CTYRAG	2 cut(s)	616, 899
Sse9I	AATT	8 cut(s)	14, 90, 100, 224, 698, 909, 1066, 1217
SsiI	CCGC	3 cut(s)	402, 669, 995
SspMI	CTAG	2 cut(s)	113, 212
SstI	GAGCTC	1 cut(s)	617
StyD4I	CCNGG	3 cut(s)	382, 1128, 1129
TaaI	ACNGT	4 cut(s)	481, 799, 961, 1003
TaiI	ACGT	2 cut(s)	652, 1041
TaqI	TCGA	3 cut(s)	74, 135, 587
TasI	AATT	8 cut(s)	14, 90, 100, 224, 698, 909, 1066, 1217
TfiI	GAWTC	4 cut(s)	253, 379, 484, 589
Tru1I	TTAA	2 cut(s)	828, 1209
Tru9I	TTAA	2 cut(s)	828, 1209
TscAI	CASTG	4 cut(s)	486, 823, 1050, 1092
TseI	GCWGC	3 cut(s)	437, 686, 722
TspDTI	ATGAA	3 cut(s)	54, 1227, 1272
TspGWI	ACGGA	1 cut(s)	1185
TspMI	CCCGGG	1 cut(s)	1129
TspRI	CASTG	4 cut(s)	486, 823, 1050, 1092
XapI	RAATTY	2 cut(s)	90, 100
XceI	RCATGY	1 cut(s)	584
XmaI	CCCGGG	1 cut(s)	1129
XspI	CTAG	2 cut(s)	113, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.