Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005263

Physical Location & Seq

Genomic Coordinates Reverse (-)

47219757 .. 47225959

Gene Structure 6203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0369900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCCCTCTCCTCACCTTCTCTTCCCGCCGTCGCCGTCTTCTTTCTTTGCTCTCAGCGGGTCCCACAAGAGCTTCGCTTAAGTACGAAACACCGCGTTGGGACGGTGTTCGCCGCTTCCGGTGATTACTACGCCACTCTCGGGGTTAACAAAGCCGCCACTAGCAAGGAAATCAAAACCGCTTTTCGGAGATTAGCTCGCCAGACTAATAATCCTTTCGATTTATTTGAGACATTTTTTGGGTCAAGCAATCCTTTCCCTGATATGGATACTCGTTTTGAAACACGCCGTCGCAGTACTATTACTAAGGGTGAAGATATACGTAATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAAAATTTGAACTTTCCCATCTGGAAACATGTGAAGTTTGCGCTGGGAGTGGAGCAAATGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGCGCAGACACCTTTTGGCTTGTTTTCTCAGGTTTCTGCATGTCCAAATTGTGGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAAGTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCCTCCTCGTGTTAGCAGGGGAAGTATTCGTAGAGTTGCTGGAGAGGGAGATGCTGGACCGAGAGGGGGCCCTCCTGGGGATCTTTATGTATATCTTGATGTTGAAGAAATAGGAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0010112 GO:0010178 GO:0010179 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0071944 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

250

Amino Acids

27.17

Weight (kDa)

9.2

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	42 - 69	4.7e-06	DnaJ domain
DnaJ_C	PF01556	108 - 245	7.7e-14	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	134 - 198	1.8e-15	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51760 AT1G51780
fragaria_vesca	FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830
malus_domestica	MD09G1197800.v1.1 MD17G1178700.v1.1
prunus_persica	Prupe.3G053700_v2.0.a1
pyrus_communis	pycom17g18780
rosa_chinensis	RchiOBHm_Chr2g0142041
rosa_laevigata	RLG00000019947
rosa_multiflora	Rmu_sc0004757.1_g000007
rosa_roxburghii	Rroxscaffold_2G00103650
rosa_rugosa	Rorug02G0369800 Rorug02G0369900 Rorug02G0370000
rosa_samantha	Rh2AG422500 Rh2BG432700 Rh2CG409400 Rh2DG442400
rosa_wichuraiana	Rw2G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	539
AccII	CGCG	1 cut(s)	96
AciI	CCGC	6 cut(s)	27, 58, 94, 114, 156, 180
AclWI	GGATC	1 cut(s)	717
AcsI	RAATTY	3 cut(s)	341, 374, 747
AfaI	GTAC	2 cut(s)	85, 298
AfiI	CCNNNNNNNGG	7 cut(s)	141, 186, 265, 444, 539, 695, 706
AflII	CTTAAG	1 cut(s)	79
AflIII	ACRYGT	2 cut(s)	398, 595
AgsI	TTSAA	3 cut(s)	281, 380, 734
AjiI	CACGTC	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	703
AloI	GAACNNNNNNTCC	2 cut(s)	436, 468
AluBI	AGCT	2 cut(s)	73, 197
AluI	AGCT	2 cut(s)	73, 197
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	717
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	3, 697
ApaI	GGGCCC	1 cut(s)	701
ApoI	RAATTY	3 cut(s)	341, 374, 747
AspLEI	GCGC	2 cut(s)	413, 493
AspS9I	GGNCC	5 cut(s)	4, 61, 686, 697, 698
AsuHPI	GGTGA	4 cut(s)	6, 134, 323, 563
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	61, 686
BaeGI	GKGCMC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	701
BauI	CACGAG	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	584
BccI	CCATC	2 cut(s)	396, 542
BceAI	ACGGC	3 cut(s)	14, 20, 273
BciT130I	CCWGG	1 cut(s)	705
BciVI	GTATCC	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	2 cut(s)	114, 156
BlsI	GCNGC	2 cut(s)	115, 157
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	2 cut(s)	61, 686
BmeT110I	CYCGRG	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	596
BmgT120I	GGNCC	5 cut(s)	4, 61, 686, 697, 698
BmiI	GGNNCC	5 cut(s)	62, 63, 436, 698, 699
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	2 cut(s)	606, 690
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	704
BsaWI	WCCGGW	1 cut(s)	119
BsaXI	ACNNNNNCTCC	4 cut(s)	414, 436, 444, 466
Bsc4I	CCNNNNNNNGG	7 cut(s)	141, 186, 265, 444, 539, 695, 706
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	1 cut(s)	704
BseLI	CCNNNNNNNGG	7 cut(s)	141, 186, 265, 444, 539, 695, 706
BseMII	CTCAG	3 cut(s)	68, 339, 530
BseRI	GAGGAG	1 cut(s)	624
BseSI	GKGCMC	1 cut(s)	701
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	5, 699
BsiHKAI	GWGCWC	1 cut(s)	584
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	2 cut(s)	47, 115
BslI	CCNNNNNNNGG	7 cut(s)	141, 186, 265, 444, 539, 695, 706
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	47, 115
BsnI	GGCC	2 cut(s)	5, 699
BsoBI	CYCGRG	1 cut(s)	140
Bsp120I	GGGCCC	1 cut(s)	697
Bsp1286I	GDGCHC	2 cut(s)	584, 701
Bsp143I	GATC	1 cut(s)	709
BspACI	CCGC	6 cut(s)	27, 58, 94, 114, 156, 180
BspANI	GGCC	2 cut(s)	5, 699
BspCNI	CTCAG	3 cut(s)	67, 340, 529
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	5 cut(s)	62, 63, 436, 698, 699
BspPI	GGATC	1 cut(s)	717
BspTI	CTTAAG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	704
BssMI	GATC	1 cut(s)	709
BssSI	CACGAG	1 cut(s)	636
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	2 cut(s)	106, 572
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	4 cut(s)	54, 306, 348, 516
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	413, 493
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	709
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	2 cut(s)	402, 531
BstSCI	CCNGG	1 cut(s)	703
BstSLI	GKGCMC	1 cut(s)	701
BstSNI	TACGTA	1 cut(s)	323
BstUI	CGCG	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	5, 699
BtrI	CACGTC	1 cut(s)	596
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	2 cut(s)	413, 493
Cfr13I	GGNCC	5 cut(s)	4, 61, 686, 697, 698
Csp6I	GTAC	2 cut(s)	84, 297
CviAII	CATG	2 cut(s)	399, 528
CviJI	RGCY	8 cut(s)	5, 73, 155, 197, 353, 435, 507, 699
CviKI_1	RGCY	8 cut(s)	5, 73, 155, 197, 353, 435, 507, 699
CviQI	GTAC	2 cut(s)	84, 297
DdeI	CTNAG	4 cut(s)	54, 306, 348, 516
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco105I	TACGTA	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	701
Eco47I	GGWCC	2 cut(s)	61, 686
Eco88I	CYCGRG	1 cut(s)	140
EcoO109I	RGGNCCY	3 cut(s)	61, 697, 698
EcoRII	CCWGG	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	701
FaeI	CATG	2 cut(s)	402, 531
FaiI	YATR	9 cut(s)	266, 320, 356, 400, 451, 482, 529, 717, 721
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FaqI	GGGAC	2 cut(s)	47, 115
FatI	CATG	2 cut(s)	398, 527
FauI	CCCGC	2 cut(s)	34, 51
Fnu4HI	GCNGC	2 cut(s)	114, 156
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	2 cut(s)	114, 156
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	2 cut(s)	412, 492
GluI	GCNGC	2 cut(s)	114, 156
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	2 cut(s)	606, 690
HaeIII	GGCC	2 cut(s)	5, 699
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	2 cut(s)	413, 493
Hin1II	CATG	2 cut(s)	402, 531
Hin6I	GCGC	2 cut(s)	411, 491
HinP1I	GCGC	2 cut(s)	411, 491
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	4 cut(s)	6, 134, 323, 563
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	4 cut(s)	189, 349, 565, 576
Hpy188III	TCNNGA	3 cut(s)	392, 585, 725
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	35, 294
HpyAV	CCTTC	2 cut(s)	27, 584
HpyCH4III	ACNGT	2 cut(s)	106, 572
HpyCH4IV	ACGT	2 cut(s)	322, 595
HpyCH4V	TGCA	1 cut(s)	527
HpyF3I	CTNAG	4 cut(s)	54, 306, 348, 516
HpySE526I	ACGT	2 cut(s)	322, 595
Hsp92II	CATG	2 cut(s)	402, 531
HspAI	GCGC	2 cut(s)	411, 491
KflI	GGGWCCC	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	709
LmnI	GCTCC	2 cut(s)	422, 440
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	322, 595
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	4 cut(s)	14, 31, 326, 746
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	2 cut(s)	584, 701
MluCI	AATT	4 cut(s)	341, 374, 535, 747
MmeI	TCCRAC	1 cut(s)	554
MseI	TTAA	3 cut(s)	80, 147, 606
MspA1I	CMGCKG	1 cut(s)	58
MspCI	CTTAAG	1 cut(s)	79
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	96
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	2 cut(s)	402, 531
NlaIV	GGNNCC	5 cut(s)	62, 63, 436, 698, 699
NspI	RCATGY	2 cut(s)	402, 531
PciI	ACATGT	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	115, 157
Ppu21I	YACGTR	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	61
PscI	ACATGT	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	703
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	5 cut(s)	62, 63, 436, 698, 699
PspOMI	GGGCCC	1 cut(s)	697
PspPI	GGNCC	5 cut(s)	4, 61, 686, 697, 698
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	2 cut(s)	85, 298
RsaNI	GTAC	2 cut(s)	84, 297
SaqAI	TTAA	3 cut(s)	80, 147, 606
SatI	GCNGC	2 cut(s)	114, 156
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	5 cut(s)	4, 61, 686, 697, 698
ScaI	AGTACT	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	2 cut(s)	584, 701
SetI	ASST	7 cut(s)	19, 75, 199, 325, 502, 522, 598
SfaNI	GCATC	1 cut(s)	670
SinI	GGWCC	2 cut(s)	61, 686
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SnaBI	TACGTA	1 cut(s)	323
Sse9I	AATT	4 cut(s)	341, 374, 535, 747
SsiI	CCGC	6 cut(s)	27, 58, 94, 114, 156, 180
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	703
TaaI	ACNGT	2 cut(s)	106, 572
TaiI	ACGT	2 cut(s)	325, 598
TaqI	TCGA	1 cut(s)	219
TaqII	GACCGA	1 cut(s)	703
TasI	AATT	4 cut(s)	341, 374, 535, 747
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	2 cut(s)	116, 158
Tru1I	TTAA	3 cut(s)	80, 147, 606
Tru9I	TTAA	3 cut(s)	80, 147, 606
Van91I	CCANNNNNTGG	1 cut(s)	539
Vha464I	CTTAAG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	61, 686
XapI	RAATTY	3 cut(s)	341, 374, 747
XceI	RCATGY	2 cut(s)	402, 531
XspI	CTAG	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.