Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004757.1

Orthogroup ID

OG0005263

Physical Location & Seq

Genomic Coordinates Forward (+)

21138 .. 23921

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004757.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgtgggtctttttgattgtactattaagtctgcttgctggccctacacctatactctcagattcctctttgagttcaaatgggttctcagaaatccccaaaaagttactcactttagcccagaaacctgagctgtttgagtggatggtgggcatcagaaggaagatacatgaaaacccagaactaggttatgaggaatttgagaccagtaagctgatcagagcagaattggacaagatgggtgttgcatataagtacccagttgcagttactggggttgtaggttccattgggactggaaagcctccttttgttgcaatcagagctgacatggatgctctggctatgcaggaaatggtggagtgggagcacaagagtaaaatccctgggaaaatgcatggttgtgggcatgatgctcatgttgcaatgcttcttggtgctgcaaagatccttaaagagcatgagaaagatttacagggaacaattgttcttgtatttcaaccagcagaggaaggaggaggtggagctaagaaagtattagatgccggagcattagagaatgttactgctattttcgggttgcatgttgcccaccatattcctttagctgaagtagcctctagacctggtcccttttttgctgggagtggcttctttgaagcaacaataagcggaaaaggaggtcatgcagcccttcctcatcatgcggttgatccaatactcgcagtttcaaatgtgattggtagcttacaacatattgtctcacgtgaagttgatccactcgactctcaggtagtgacagttggaaaagttcaaggaggtgaagcattcaatgttattccagattctgtaactattggtggcactttccgtgccttttcaaaggagagcttattgcaactcaaacagcgcatagagaaggttataacagggcaggctgctgtacaaagatgcaatggaacggtcaatttctttgaagatgagaaacctttgttccccccgacagtaaaccataaggaattgcacaaacactttcaaaatgtcgcaggagatatgcttggcacgcacaaagtcaaagaccacccgccattaatgggatccgaggactttgcatattaccaagaggcaatacctggattcttcttctttcttggaatgaaggatgacaggcttggatatctggatacaccacactcaccttacttccggatcaacgaggatgcacttccttatggtgctgcacttcatgcttctttggctgttaggtatttgattgaaactcaacaggaggttcctttgccagaacagcaaattcgtgatgagttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0010112 GO:0010178 GO:0010179 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0071944 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

442

Amino Acids

48.27

Weight (kDa)

5.85

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51760 AT1G51780
fragaria_vesca	FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830
malus_domestica	MD09G1197800.v1.1 MD17G1178700.v1.1
prunus_persica	Prupe.3G053700_v2.0.a1
pyrus_communis	pycom17g18780
rosa_chinensis	RchiOBHm_Chr2g0142041
rosa_laevigata	RLG00000019947
rosa_multiflora	Rmu_sc0004757.1_g000007
rosa_roxburghii	Rroxscaffold_2G00103650
rosa_rugosa	Rorug02G0369800 Rorug02G0369900 Rorug02G0370000
rosa_samantha	Rh2AG422500 Rh2BG432700 Rh2CG409400 Rh2DG442400
rosa_wichuraiana	Rw2G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	926
AccIII	TCCGGA	1 cut(s)	1206
AciI	CCGC	3 cut(s)	672, 707, 1085
AclWI	GGATC	6 cut(s)	442, 707, 770, 1092, 1105, 1217
AcsI	RAATTY	2 cut(s)	197, 1311
AcuI	CTGAAG	1 cut(s)	630
AcvI	CACGTG	1 cut(s)	767
AfaI	GTAC	3 cut(s)	21, 257, 945
AfiI	CCNNNNNNNGG	2 cut(s)	185, 1094
AjnI	CCWGG	3 cut(s)	385, 625, 1132
AloI	GAACNNNNNNTCC	2 cut(s)	471, 503
AluBI	AGCT	7 cut(s)	133, 214, 326, 527, 608, 747, 891
AluI	AGCT	7 cut(s)	133, 214, 326, 527, 608, 747, 891
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	197, 766
AlwI	GGATC	6 cut(s)	442, 707, 770, 1092, 1105, 1217
AlwNI	CAGNNNCTG	2 cut(s)	272, 848
Aor13HI	TCCGGA	1 cut(s)	1206
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	4 cut(s)	440, 689, 938, 1238
ApoI	RAATTY	2 cut(s)	197, 1311
AseI	ATTAAT	1 cut(s)	1091
AspLEI	GCGC	1 cut(s)	912
AspS9I	GGNCC	2 cut(s)	41, 629
AsuHPI	GGTGA	2 cut(s)	833, 1188
AvaII	GGWCC	1 cut(s)	629
BamHI	GGATCC	1 cut(s)	1097
BbrPI	CACGTG	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	427, 701, 925, 1225
BccI	CCATC	2 cut(s)	139, 232
BcgI	CGANNNNNNTGC	2 cut(s)	1091, 1125
BciT130I	CCWGG	3 cut(s)	387, 627, 1134
BciVI	GTATCC	1 cut(s)	1177
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	197, 766
BfaI	CTAG	2 cut(s)	185, 621
BfuI	GTATCC	1 cut(s)	1177
BisI	GCNGC	4 cut(s)	441, 690, 939, 1239
BlsI	GCNGC	4 cut(s)	442, 691, 940, 1240
Bme1390I	CCNGG	3 cut(s)	387, 627, 1134
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	41, 629
BmiI	GGNNCC	4 cut(s)	286, 631, 1099, 1293
BmrFI	CCNGG	3 cut(s)	387, 627, 1134
BmrI	ACTGGG	2 cut(s)	254, 282
BmsI	GCATC	6 cut(s)	162, 325, 403, 532, 941, 1210
BmuI	ACTGGG	2 cut(s)	254, 282
Bpu10I	CCTNAGC	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	385, 386, 1101
BsaWI	WCCGGW	1 cut(s)	1206
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 1094
Bse1I	ACTGG	4 cut(s)	207, 260, 277, 301
Bse3DI	GCAATG	2 cut(s)	432, 961
BseAI	TCCGGA	1 cut(s)	1206
BseBI	CCWGG	3 cut(s)	387, 627, 1134
BseDI	CCNNGG	3 cut(s)	385, 386, 1101
BseGI	GGATG	4 cut(s)	150, 340, 1168, 1225
BseLI	CCNNNNNNNGG	2 cut(s)	185, 1094
BseMI	GCAATG	2 cut(s)	432, 961
BseMII	CTCAG	4 cut(s)	72, 102, 120, 803
BseNI	ACTGG	4 cut(s)	207, 260, 277, 301
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	4 cut(s)	427, 701, 925, 1225
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	1224
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	546, 1207
BslFI	GGGAC	2 cut(s)	307, 615
BslI	CCNNNNNNNGG	2 cut(s)	185, 1094
BsmAI	GTCTC	2 cut(s)	197, 766
BsmFI	GGGAC	2 cut(s)	307, 615
BsmI	GAATGC	1 cut(s)	827
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp13I	TCCGGA	1 cut(s)	1206
Bsp1407I	TGTACA	1 cut(s)	943
Bsp143I	GATC	6 cut(s)	216, 447, 712, 775, 1097, 1209
BspACI	CCGC	3 cut(s)	672, 707, 1085
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	4 cut(s)	71, 101, 121, 802
BspEI	TCCGGA	1 cut(s)	1206
BspLI	GGNNCC	4 cut(s)	286, 631, 1099, 1293
BspPI	GGATC	6 cut(s)	442, 707, 770, 1092, 1105, 1217
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	432, 961
BsrGI	TGTACA	1 cut(s)	943
BsrI	ACTGG	4 cut(s)	207, 260, 277, 301
BssECI	CCNNGG	3 cut(s)	385, 386, 1101
BssMI	GATC	6 cut(s)	216, 447, 712, 775, 1097, 1209
Bst2UI	CCWGG	3 cut(s)	387, 627, 1134
Bst4CI	ACNGT	3 cut(s)	802, 964, 1006
BstAPI	GCANNNNNTGC	1 cut(s)	1247
BstAUI	TGTACA	1 cut(s)	943
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	4 cut(s)	36, 40, 936, 1064
BstDEI	CTNAG	5 cut(s)	58, 88, 129, 528, 789
BstF5I	GGATG	4 cut(s)	150, 340, 1168, 1225
BstHHI	GCGC	1 cut(s)	912
BstKTI	GATC	6 cut(s)	219, 450, 715, 778, 1100, 1212
BstMAI	GTCTC	2 cut(s)	197, 766
BstMBI	GATC	6 cut(s)	216, 447, 712, 775, 1097, 1209
BstMWI	GCNNNNNNNGC	7 cut(s)	323, 422, 614, 1063, 1247, 1256, 1306
BstNI	CCWGG	3 cut(s)	387, 627, 1134
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	3 cut(s)	385, 625, 1132
BstV1I	GCAGC	4 cut(s)	427, 701, 925, 1225
BstX2I	RGATCY	2 cut(s)	447, 1097
BstYI	RGATCY	2 cut(s)	447, 1097
BsuI	GTATCC	1 cut(s)	1177
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	4 cut(s)	150, 340, 1168, 1225
Cac8I	GCNNGC	4 cut(s)	36, 40, 936, 1064
CaiI	CAGNNNCTG	2 cut(s)	272, 848
CfoI	GCGC	1 cut(s)	912
Cfr13I	GGNCC	2 cut(s)	41, 629
CsiI	ACCWGGT	1 cut(s)	625
Csp6I	GTAC	3 cut(s)	20, 256, 944
CviQI	GTAC	3 cut(s)	20, 256, 944
DdeI	CTNAG	5 cut(s)	58, 88, 129, 528, 789
DpnI	GATC	6 cut(s)	218, 449, 714, 777, 1099, 1211
DpnII	GATC	6 cut(s)	216, 447, 712, 775, 1097, 1209
Eco31I	GGTCTC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	1178
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	630
Eco72I	CACGTG	1 cut(s)	767
EcoRII	CCWGG	3 cut(s)	385, 625, 1132
EcoRV	GATATC	1 cut(s)	1178
EcoT22I	ATGCAT	1 cut(s)	399
FalI	AAGNNNNNCTT	2 cut(s)	875, 907
FaqI	GGGAC	2 cut(s)	307, 615
FauI	CCCGC	1 cut(s)	1092
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	441, 690, 939, 1239
FokI	GGATG	4 cut(s)	157, 347, 1175, 1232
Fsp4HI	GCNGC	4 cut(s)	441, 690, 939, 1239
FspBI	CTAG	2 cut(s)	185, 621
GlaI	GCGC	1 cut(s)	911
GluI	GCNGC	4 cut(s)	441, 690, 939, 1239
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	546, 1207
HhaI	GCGC	1 cut(s)	912
Hin6I	GCGC	1 cut(s)	910
HinP1I	GCGC	1 cut(s)	910
HinfI	GANTC	4 cut(s)	62, 785, 845, 1137
HpaII	CCGG	2 cut(s)	546, 1207
HphI	GGTGA	2 cut(s)	833, 1188
Hpy166II	GTNNAC	1 cut(s)	1009
Hpy188I	TCNGA	6 cut(s)	61, 91, 158, 221, 323, 1102
Hpy188III	TCNNGA	5 cut(s)	621, 842, 1181, 1207, 1316
Hpy8I	GTNNAC	1 cut(s)	1009
HpyAV	CCTTC	5 cut(s)	153, 506, 704, 913, 1153
HpyCH4III	ACNGT	3 cut(s)	802, 964, 1006
HpyCH4IV	ACGT	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	7 cut(s)	323, 422, 614, 1063, 1247, 1256, 1306
HpyF3I	CTNAG	5 cut(s)	58, 88, 129, 528, 789
HpySE526I	ACGT	1 cut(s)	766
HspAI	GCGC	1 cut(s)	910
Kpn2I	TCCGGA	1 cut(s)	1206
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	6 cut(s)	216, 447, 712, 775, 1097, 1209
LmnI	GCTCC	3 cut(s)	367, 524, 548
Lsp1109I	GCAGC	4 cut(s)	427, 701, 925, 1225
LweI	GCATC	6 cut(s)	162, 325, 403, 532, 941, 1210
MabI	ACCWGGT	1 cut(s)	625
MaeI	CTAG	2 cut(s)	185, 621
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	5 cut(s)	105, 268, 562, 796, 850
MalI	GATC	6 cut(s)	218, 449, 714, 777, 1099, 1211
MboI	GATC	6 cut(s)	216, 447, 712, 775, 1097, 1209
MboII	GAAGA	4 cut(s)	175, 989, 1132, 1135
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	2 cut(s)	447, 1097
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	6 cut(s)	197, 227, 483, 967, 1019, 1311
MlyI	GAGTC	1 cut(s)	779
MmeI	TCCRAC	1 cut(s)	784
Mph1103I	ATGCAT	1 cut(s)	399
MroI	TCCGGA	1 cut(s)	1206
MseI	TTAA	3 cut(s)	26, 453, 1091
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	2 cut(s)	546, 1207
MspR9I	CCNGG	3 cut(s)	387, 627, 1134
MunI	CAATTG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	827
MvaI	CCWGG	3 cut(s)	387, 627, 1134
MwoI	GCNNNNNNNGC	7 cut(s)	323, 422, 614, 1063, 1247, 1256, 1306
NdeII	GATC	6 cut(s)	216, 447, 712, 775, 1097, 1209
NlaIV	GGNNCC	4 cut(s)	286, 631, 1099, 1293
NmuCI	GTSAC	1 cut(s)	796
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	587
PasI	CCCWGGG	1 cut(s)	386
PctI	GAATGC	1 cut(s)	827
PfeI	GAWTC	3 cut(s)	62, 845, 1137
PflFI	GACNNNGTC	1 cut(s)	627
PkrI	GCNGC	4 cut(s)	442, 691, 940, 1240
PleI	GAGTC	1 cut(s)	779
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	779
Ppu21I	YACGTR	1 cut(s)	767
PshBI	ATTAAT	1 cut(s)	1091
PsiI	TTATAA	1 cut(s)	926
Psp6I	CCWGG	3 cut(s)	385, 625, 1132
PspCI	CACGTG	1 cut(s)	767
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	3 cut(s)	385, 625, 1132
PspN4I	GGNNCC	4 cut(s)	286, 631, 1099, 1293
PspPI	GGNCC	2 cut(s)	41, 629
PstNI	CAGNNNCTG	2 cut(s)	272, 848
PsuI	RGATCY	2 cut(s)	447, 1097
PsyI	GACNNNGTC	1 cut(s)	627
RsaI	GTAC	3 cut(s)	21, 257, 945
RsaNI	GTAC	3 cut(s)	20, 256, 944
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	26, 453, 1091
SatI	GCNGC	4 cut(s)	441, 690, 939, 1239
Sau3AI	GATC	6 cut(s)	216, 447, 712, 775, 1097, 1209
Sau96I	GGNCC	2 cut(s)	41, 629
SchI	GAGTC	1 cut(s)	779
ScrFI	CCNGG	3 cut(s)	387, 627, 1134
SduI	GDGCHC	1 cut(s)	372
SexAI	ACCWGGT	1 cut(s)	625
SfaNI	GCATC	6 cut(s)	162, 325, 403, 532, 941, 1210
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	6 cut(s)	197, 227, 483, 967, 1019, 1311
SsiI	CCGC	3 cut(s)	672, 707, 1085
SspMI	CTAG	2 cut(s)	185, 621
StyD4I	CCNGG	3 cut(s)	385, 625, 1132
TaaI	ACNGT	3 cut(s)	802, 964, 1006
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	1 cut(s)	783
TasI	AATT	6 cut(s)	197, 227, 483, 967, 1019, 1311
TatI	WGTACW	2 cut(s)	19, 943
TfiI	GAWTC	3 cut(s)	62, 845, 1137
Tru1I	TTAA	3 cut(s)	26, 453, 1091
Tru9I	TTAA	3 cut(s)	26, 453, 1091
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	4 cut(s)	440, 689, 938, 1238
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	3 cut(s)	186, 1172, 1235
TspGWI	ACGGA	1 cut(s)	860
Tth111I	GACNNNGTC	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	629
VspI	ATTAAT	1 cut(s)	1091
XapI	RAATTY	2 cut(s)	197, 1311
XbaI	TCTAGA	1 cut(s)	620
XceI	RCATGY	1 cut(s)	587
XspI	CTAG	2 cut(s)	185, 621
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.