Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005263

Physical Location & Seq

Genomic Coordinates Forward (+)

47229816 .. 47233005

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2910 bp

ATGGCTGAAGCCCTTATTTCCGTTGTCCTAGAACAATTGGCTTCAATCACCCGTCAACAGGTACAGCAACAAGTGAAATTGGTAGTTGATGTTAAGAAAGAAGTTGCAAATCTCAACGACAATTTCCGAGCTATAAAAGCCGTGCTCAAAGATGCAGAGGAGAGGCAAGTGAAGGAGGATTCCGTCAAATTATGGCTGGATAATTTAAAGGACGTGTCCAACGAGATGGAGGACGTGTTGGATGATTGGAACACTGAAATTCTGAAGCTACAAATTGAGAAACAAGAGAAAGAAGATGGAAATGCTCTTGATACGACTAAGAAGAAGGTATGTCTATGCATTCCTACTACTTTCTTTTGTTCTGGCCAAGTTAGTCGACTTATTTTTCGTCGCGACATTGCTCAAAAGATTAAAGATCTCAATGAAAGGTTAGCAACAATTGCTAATATGAGGCAAAATTTTAACTTTCAGTATACAAAAAGTGGTACTGAACTTATTGAGAGACAAAAGACTACTTCTTTTGTCGATCAAACATTTGGTCGGGTAGATGAAAAAGAATTCTTGGTGCGCATGTTGTTGAGTGAGAGTAATCCTGAAGGGCAGAGCCCCCTTGTCATCCCTATTGTAGGGATGGGTGGAATCGGTAAAACAACCCTTGCCCAACTAGCATATAATGATGAAAAAGTGAAGGCTAATTTCACAAAAAGAATATGGGTTTGTGTCTCAGACCCATTTGATGAGCTCAACACAGCCAAAGCCATCATTGGAGCCCTCGGTGTAGATGTCAATTCCATTTCGAATAACCTAGAAGCTTTCTTCCAATCTGTGCACAAATCTATCAAGGGAGAAAAGTTTCTCCTCGTCTTAGATGATGTGTGGAACCCAGACTATACGAAGTGGGAAAATTTGAAGCTACCTTTACAGAATGGTGCTGTAGGTAGTAAAATAATAGTCACTACACGAAAAGAAGAAGTAGCTAGGATGATGGGAGCACCTGATAACACAATCAAGTTGGAGGTGTTGAGTGATGAAAATTGTTGGTCATTGTTCACTAGAATTGCCTTTACCAATAGAAAACAAGATGAGTGTCAAATTTTGGAACCTATTGGTAGGGAAATTGTAAAGAAGTGCAAAGGGTTGCCTCTTGTTGCCAAGACTTTAGGTGGTCTCATGCGTTGTAAGAAAGCAAAGAAAGAATGGCAAGATGTTTTGAGTAGTGAGATATGGGAGTTAGACAGGATGGAGCAACAAGTTTTCCAACCGCTGTTACTAAGTTATTATGATTTAACTCCAATGATCAAGCGGTGTCTATTATATTGTGTTACTTTCCCAAAAGACCATATAATTAAGAGAAAAGTTTTGATTGAGTTGTGGATGTCGCAAGGTTTTCTTGTTTCAGTTGGGAACAAAGAAAAGACAATGACAGACATTGGAGAATCATATTTCGATAACTTGGTAATGCGATCTTTCTTCCAGAATTTTGAGGAGGATGAATTTGGAGATATTATACGGTGCCAAATGCATGATATTGTGCACGACTTTCTCCAATATTTAACCAAGAATGAATGCTTAATCGTTGAGTTCAAAGGTGGGGAGGAGAGAATAGAATTGCCCAATAAGCTTGGTCATTTGACCATAATGTTTGCACCCGAAGAACCTTTTCCCTTTTCTTTTGACCACTGCCAACGTCTGCGGACCATTACAACATTTAATTGTAAAATTACAAGTCTCAGCCGAGAGTTGATTTTACAATTAAAATGCGTGAGGACGTTGAATTTGAGTGACAACGATATCAAGAAAGTTCCGGACGAGGTAGGCGGGTTGGTGCACTTGAGGTATTTGGATTTATCCTATAATGAGAGGCTGAAGAAATTACCTGATAGTTTGTGTAATTTAGTCAATTTGCAAACCTTGCGAGTTGATGGGTGCATGAGACTTAAAAAGTTACCCGAGGCCATGGGAAAGCTGACCAGCTTGCAGCATCTTCATGCTGATATTCAAAAGTGGCCGCCGCTGAAGTTGCCCAAATCAATTGCGAGGTTGAAAAGTCTACGGACTCTAGATCTGACTGTTGTAATTGAAGGTGAAGAAGGATTGAGGTTAAGTGATTTGAGAGACATGGACGAGCTTCAGGGGAAGCTTTGGATCAGATTGCAGGGGAAATTGAAAGATAGTGCTGCGAGTGATGCGGAGAAAGCCAAATTGGTGAACAAGAAACACCTTCTTCATTTGAGACTAGGGTTCGAGTGGATGGAGAGCGAGGTCAACCAGAGTACCATCCAGGAAGCAGTATTGAATGCCTTACAGCCAAATTCAAATCTTGAATCCTTACGGATCTCAAGTAGTTGCAGCACCCTGTGCCCCAATTGGACCTCCTCTTTAATTAACTTGAAAAGCGTAACCTTCTCTTACTGCGATGTTTGTAAGTATGTGCCTCTTTCGGTTTTGGGCGACTTGGGGTCCCTTGAGAGACTCAGATTTGAATACATAGGAGAAGTGAAGAAGGTTGGATTTGAGTACTCACTTGATCATCAAGTTATATTGTTCCCCAATCTGAAACAACTCGAGTTTGAGGGAATGCGGGAGTGGGAAGAATGGGATCATGATGAGAATGATGCTACTTCATCGTCACCAACTCGTTTCATGCCACGCCTTTCTACTTTATCCATTGAATGGTGCGATAAGCTGAAGACACTGCCAGACTTCCTTCCAAGGAAGACGCCGCTGCTTCAGAATTTGATCATCTACAATTGTCCCATTCTCTCCCAAAGTTGCAAAGACAGGCAAGGCCCGGAGTGGTCCAAGATTTCTCACATCCCAAACATCAAAATTGATTTGAAAACTGAACAAAAAGATGGAGTTTCGATCGAACAAGAGGAAGAAATTGATGAAGAAAGTGATCCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0010112 GO:0010178 GO:0010179 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0071944 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

969

Amino Acids

111.31

Weight (kDa)

5.74

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	6 - 95	4.3e-21	Rx N-terminal domain
NB-ARC	PF00931	192 - 358	2.9e-37	NB-ARC domain
WHD_DRP	PF23559	443 - 514	8e-25	Disease resistance protein Winged helix domain
LRR_14	PF23598	564 - 891	5.4e-29	Leucine-rich repeat region
LRR_8	PF13855	564 - 619	2.3e-07	Leucine rich repeat
LRR_8	PF13855	589 - 643	1.6e-08	Leucine rich repeat
LRR_4	PF12799	589 - 627	4.9e-06	Leucine Rich repeats (2 copies)
LRR_R13L1-DRL21	PF25019	701 - 828	1.2e-23	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51760 AT1G51780
fragaria_vesca	FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830
malus_domestica	MD09G1197800.v1.1 MD17G1178700.v1.1
prunus_persica	Prupe.3G053700_v2.0.a1
pyrus_communis	pycom17g18780
rosa_chinensis	RchiOBHm_Chr2g0142041
rosa_laevigata	RLG00000019947
rosa_multiflora	Rmu_sc0004757.1_g000007
rosa_roxburghii	Rroxscaffold_2G00103650
rosa_rugosa	Rorug02G0369800 Rorug02G0369900 Rorug02G0370000
rosa_samantha	Rh2AG422500 Rh2BG432700 Rh2CG409400 Rh2DG442400
rosa_wichuraiana	Rw2G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	1512
AccB7I	CCANNNNNTGG	1 cut(s)	2673
AccI	GTMKAC	3 cut(s)	376, 473, 2050
AccII	CGCG	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	1804
AciI	CCGC	9 cut(s)	1262, 1303, 1693, 1818, 2009, 2012, 2189, 2581, 2723
AclWI	GGATC	4 cut(s)	2153, 2342, 2607, 2894
AcoI	YGGCCR	2 cut(s)	364, 2006
AcuI	CTGAAG	8 cut(s)	27, 284, 615, 1886, 2036, 2114, 2708, 2714
AcyI	GRCGYC	1 cut(s)	2720
AdeI	CACNNNGTG	1 cut(s)	2358
AfaI	GTAC	4 cut(s)	63, 487, 2275, 2519
AfiI	CCNNNNNNNGG	3 cut(s)	58, 626, 2673
AflIII	ACRYGT	2 cut(s)	213, 234
AhdI	GACNNNNNGTC	1 cut(s)	2458
AjiI	CACGTC	2 cut(s)	214, 235
AjnI	CCWGG	1 cut(s)	2280
AjuI	GAANNNNNNNTTGG	2 cut(s)	2186, 2218
Alw21I	GWGCWC	6 cut(s)	147, 744, 831, 994, 1536, 1830
Alw26I	GTCTC	8 cut(s)	496, 727, 1172, 1733, 1927, 2109, 2227, 2464
Alw44I	GTGCAC	3 cut(s)	827, 1532, 1826
AlwI	GGATC	4 cut(s)	2153, 2342, 2607, 2894
Ama87I	CYCGRG	2 cut(s)	1949, 2564
Aor13HI	TCCGGA	1 cut(s)	1804
AoxI	GGCC	4 cut(s)	364, 1953, 2006, 2788
ApaLI	GTGCAC	3 cut(s)	827, 1532, 1826
ApeKI	GCWGC	4 cut(s)	1978, 2177, 2349, 2725
ArsI	GACNNNNNNTTYG	6 cut(s)	369, 401, 523, 555, 1759, 1791
Asp700I	GAANNNNTTC	2 cut(s)	852, 1659
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	5 cut(s)	1695, 2370, 2460, 2789, 2799
AsuC2I	CCSGG	1 cut(s)	2792
AsuHPI	GGTGA	4 cut(s)	40, 2096, 2218, 2622
AsuII	TTCGAA	1 cut(s)	797
AvaI	CYCGRG	2 cut(s)	1949, 2564
AvaII	GGWCC	4 cut(s)	1695, 2370, 2460, 2799
BaeGI	GKGCMC	4 cut(s)	831, 1536, 1830, 2363
BaeI	ACNNNNGTAYC	2 cut(s)	2257, 2290
BalI	TGGCCA	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	1512
BanII	GRGCYC	3 cut(s)	608, 744, 772
BbsI	GAAGAC	2 cut(s)	2696, 2723
Bbv12I	GWGCWC	6 cut(s)	147, 744, 831, 994, 1536, 1830
BbvI	GCAGC	4 cut(s)	1990, 2164, 2361, 2712
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	2282
BclI	TGATCA	3 cut(s)	1296, 2527, 2739
BcnI	CCSGG	1 cut(s)	2792
BcoDI	GTCTC	8 cut(s)	496, 727, 1172, 1733, 1927, 2109, 2227, 2464
BfaI	CTAG	7 cut(s)	29, 665, 806, 978, 1053, 2060, 2237
BfmI	CTRYAG	1 cut(s)	933
BglII	AGATCT	2 cut(s)	415, 2062
BisI	GCNGC	7 cut(s)	1979, 2009, 2012, 2178, 2350, 2723, 2726
BlsI	GCNGC	7 cut(s)	1980, 2010, 2013, 2179, 2351, 2724, 2727
BmcAI	AGTACT	1 cut(s)	2519
Bme1390I	CCNGG	2 cut(s)	2282, 2792
Bme18I	GGWCC	4 cut(s)	1695, 2370, 2460, 2799
BmeRI	GACNNNNNGTC	1 cut(s)	2458
BmeT110I	CYCGRG	2 cut(s)	1949, 2564
BmgBI	CACGTC	2 cut(s)	214, 235
BmgT120I	GGNCC	5 cut(s)	1695, 2370, 2460, 2789, 2799
BmiI	GGNNCC	6 cut(s)	769, 881, 1101, 1514, 2461, 2462
BmrFI	CCNGG	2 cut(s)	2282, 2792
BmsI	GCATC	4 cut(s)	142, 1990, 2176, 2605
BpiI	GAAGAC	2 cut(s)	2696, 2723
Bpu14I	TTCGAA	1 cut(s)	797
BpuEI	CTTGAG	3 cut(s)	1852, 2323, 2486
BpuMI	CCSGG	1 cut(s)	2792
BsaHI	GRCGYC	1 cut(s)	2720
BsaI	GGTCTC	1 cut(s)	1172
BsaJI	CCNNGG	4 cut(s)	772, 1950, 1956, 2711
BsaWI	WCCGGW	1 cut(s)	1804
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 626, 2673
Bse3DI	GCAATG	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	1804
BseBI	CCWGG	1 cut(s)	2282
BseDI	CCNNGG	4 cut(s)	772, 1950, 1956, 2711
BseLI	CCNNNNNNNGG	3 cut(s)	58, 626, 2673
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	3 cut(s)	738, 1744, 2488
BseRI	GAGGAG	5 cut(s)	173, 848, 1499, 1610, 2365
BseSI	GKGCMC	4 cut(s)	831, 1536, 1830, 2363
BseXI	GCAGC	4 cut(s)	1990, 2164, 2361, 2712
Bsh1236I	CGCG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	2868
BshFI	GGCC	4 cut(s)	366, 1955, 2008, 2790
BshNI	GGYRCC	1 cut(s)	1512
BsiEI	CGRYCG	1 cut(s)	2868
BsiHKAI	GWGCWC	6 cut(s)	147, 744, 831, 994, 1536, 1830
BsiHKCI	CYCGRG	2 cut(s)	1949, 2564
BsiSI	CCGG	2 cut(s)	1805, 2792
BslFI	GGGAC	2 cut(s)	2446, 2739
BslI	CCNNNNNNNGG	3 cut(s)	58, 626, 2673
BsmAI	GTCTC	8 cut(s)	496, 727, 1172, 1733, 1927, 2109, 2227, 2464
BsmFI	GGGAC	2 cut(s)	2446, 2739
BsmI	GAATGC	4 cut(s)	339, 1571, 2302, 2583
BsnI	GGCC	4 cut(s)	366, 1955, 2008, 2790
Bso31I	GGTCTC	1 cut(s)	1172
BsoBI	CYCGRG	2 cut(s)	1949, 2564
Bsp119I	TTCGAA	1 cut(s)	797
Bsp1286I	GDGCHC	9 cut(s)	147, 608, 744, 772, 831, 994, 1536, 1830, 2363
Bsp13I	TCCGGA	1 cut(s)	1804
Bsp19I	CCATGG	1 cut(s)	1956
Bsp68I	TCGCGA	1 cut(s)	393
BspACI	CCGC	9 cut(s)	1262, 1303, 1693, 1818, 2009, 2012, 2189, 2581, 2723
BspANI	GGCC	4 cut(s)	366, 1955, 2008, 2790
BspCNI	CTCAG	3 cut(s)	737, 1743, 2487
BspEI	TCCGGA	1 cut(s)	1804
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	2602
BspLI	GGNNCC	6 cut(s)	769, 881, 1101, 1514, 2461, 2462
BspPI	GGATC	4 cut(s)	2153, 2342, 2607, 2894
BspT104I	TTCGAA	1 cut(s)	797
BspT107I	GGYRCC	1 cut(s)	1512
BspTNI	GGTCTC	1 cut(s)	1172
BsrDI	GCAATG	1 cut(s)	396
BssECI	CCNNGG	4 cut(s)	772, 1950, 1956, 2711
BssNAI	GTATAC	1 cut(s)	474
BssNI	GRCGYC	1 cut(s)	2720
BssT1I	CCWWGG	2 cut(s)	1956, 2711
Bst1107I	GTATAC	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	2282
Bst4CI	ACNGT	2 cut(s)	1512, 2071
BstACI	GRCGYC	1 cut(s)	2720
BstAPI	GCANNNNNTGC	3 cut(s)	440, 1912, 2358
BstBI	TTCGAA	1 cut(s)	797
BstC8I	GCNNGC	1 cut(s)	1976
BstDEI	CTNAG	6 cut(s)	318, 724, 865, 1271, 1730, 2474
BstDSI	CCRYGG	1 cut(s)	1956
BstENI	CCTNNNNNAGG	1 cut(s)	624
BstFNI	CGCG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	570
BstMAI	GTCTC	8 cut(s)	496, 727, 1172, 1733, 1927, 2109, 2227, 2464
BstMCI	CGRYCG	1 cut(s)	2868
BstMWI	GCNNNNNNNGC	9 cut(s)	137, 440, 665, 1618, 1912, 2020, 2186, 2195, 2358
BstNI	CCWGG	1 cut(s)	2282
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	2280, 2790
BstSFI	CTRYAG	1 cut(s)	933
BstSLI	GKGCMC	4 cut(s)	831, 1536, 1830, 2363
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	4 cut(s)	1990, 2164, 2361, 2712
BstV2I	GAAGAC	2 cut(s)	2696, 2723
BstX2I	RGATCY	3 cut(s)	415, 2062, 2334
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	3 cut(s)	415, 2062, 2334
BstZ17I	GTATAC	1 cut(s)	474
BsuRI	GGCC	4 cut(s)	366, 1955, 2008, 2790
BtgI	CCRYGG	1 cut(s)	1956
BtgZI	GCGATG	1 cut(s)	2430
BtrI	CACGTC	2 cut(s)	214, 235
BtsI	GCAGTG	2 cut(s)	1678, 2693
BtsIMutI	CAGTG	3 cut(s)	252, 1678, 2693
BtuMI	TCGCGA	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	1976
CciI	TCATGA	1 cut(s)	2602
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	5 cut(s)	1695, 2370, 2460, 2789, 2799
CseI	GACGC	1 cut(s)	2728
Csp6I	GTAC	4 cut(s)	62, 486, 2274, 2518
CviAII	CATG	9 cut(s)	571, 1171, 1523, 1930, 1957, 1988, 2119, 2603, 2644
CviQI	GTAC	4 cut(s)	62, 486, 2274, 2518
DdeI	CTNAG	6 cut(s)	318, 724, 865, 1271, 1730, 2474
DraI	TTTAAA	1 cut(s)	207
DraIII	CACNNNGTG	1 cut(s)	2358
DriI	GACNNNNNGTC	1 cut(s)	2458
EaeI	YGGCCR	2 cut(s)	364, 2006
Eam1105I	GACNNNNNGTC	1 cut(s)	2458
Ecl136II	GAGCTC	1 cut(s)	742
Eco130I	CCWWGG	2 cut(s)	1956, 2711
Eco24I	GRGCYC	3 cut(s)	608, 744, 772
Eco31I	GGTCTC	1 cut(s)	1172
Eco32I	GATATC	1 cut(s)	1792
Eco47I	GGWCC	4 cut(s)	1695, 2370, 2460, 2799
Eco53kI	GAGCTC	1 cut(s)	742
Eco57I	CTGAAG	8 cut(s)	27, 284, 615, 1886, 2036, 2114, 2708, 2714
Eco88I	CYCGRG	2 cut(s)	1949, 2564
EcoICRI	GAGCTC	1 cut(s)	742
EcoNI	CCTNNNNNAGG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	2460
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	2280
EcoRV	GATATC	1 cut(s)	1792
EcoT14I	CCWWGG	2 cut(s)	1956, 2711
EcoT22I	ATGCAT	2 cut(s)	341, 1524
EcoT38I	GRGCYC	3 cut(s)	608, 744, 772
ErhI	CCWWGG	2 cut(s)	1956, 2711
FaeI	CATG	9 cut(s)	574, 1174, 1526, 1933, 1960, 1991, 2122, 2606, 2647
FalI	AAGNNNNNCTT	2 cut(s)	1374, 1406
FaqI	GGGAC	2 cut(s)	2446, 2739
FatI	CATG	9 cut(s)	570, 1170, 1522, 1929, 1956, 1987, 2118, 2602, 2643
FauI	CCCGC	2 cut(s)	1811, 2574
FbaI	TGATCA	3 cut(s)	1296, 2527, 2739
FblI	GTMKAC	3 cut(s)	376, 473, 2050
Fnu4HI	GCNGC	7 cut(s)	1979, 2009, 2012, 2178, 2350, 2723, 2726
FriOI	GRGCYC	3 cut(s)	608, 744, 772
Fsp4HI	GCNGC	7 cut(s)	1979, 2009, 2012, 2178, 2350, 2723, 2726
FspAI	RTGCGCAY	1 cut(s)	569
FspBI	CTAG	7 cut(s)	29, 665, 806, 978, 1053, 2060, 2237
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	7 cut(s)	1979, 2009, 2012, 2178, 2350, 2723, 2726
HaeIII	GGCC	4 cut(s)	366, 1955, 2008, 2790
HapII	CCGG	2 cut(s)	1805, 2792
HgaI	GACGC	1 cut(s)	2728
HhaI	GCGC	1 cut(s)	570
Hin1I	GRCGYC	1 cut(s)	2720
Hin1II	CATG	9 cut(s)	574, 1174, 1526, 1933, 1960, 1991, 2122, 2606, 2647
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HincII	GTYRAC	3 cut(s)	56, 377, 2266
HindII	GTYRAC	3 cut(s)	56, 377, 2266
HindIII	AAGCTT	3 cut(s)	810, 1619, 2138
HinfI	GANTC	6 cut(s)	179, 639, 1436, 2056, 2324, 2472
HpaII	CCGG	2 cut(s)	1805, 2792
HphI	GGTGA	4 cut(s)	40, 2096, 2218, 2622
Hpy188I	TCNGA	8 cut(s)	128, 264, 727, 2067, 2150, 2477, 2556, 2733
Hpy188III	TCNNGA	9 cut(s)	308, 392, 593, 1474, 1795, 1805, 2060, 2321, 2603
Hpy99I	CGWCG	1 cut(s)	393
HpyCH4III	ACNGT	2 cut(s)	1512, 2071
HpyCH4IV	ACGT	4 cut(s)	213, 234, 1687, 1769
HpyF10VI	GCNNNNNNNGC	9 cut(s)	137, 440, 665, 1618, 1912, 2020, 2186, 2195, 2358
HpyF3I	CTNAG	6 cut(s)	318, 724, 865, 1271, 1730, 2474
HpySE526I	ACGT	4 cut(s)	213, 234, 1687, 1769
Hsp92I	GRCGYC	1 cut(s)	2720
Hsp92II	CATG	9 cut(s)	574, 1174, 1526, 1933, 1960, 1991, 2122, 2606, 2647
HspAI	GCGC	1 cut(s)	568
KflI	GGGWCCC	1 cut(s)	2460
Kpn2I	TCCGGA	1 cut(s)	1804
Ksp22I	TGATCA	3 cut(s)	1296, 2527, 2739
LmnI	GCTCC	3 cut(s)	767, 989, 1243
Lsp1109I	GCAGC	4 cut(s)	1990, 2164, 2361, 2712
LweI	GCATC	4 cut(s)	142, 1990, 2176, 2605
MaeI	CTAG	7 cut(s)	29, 665, 806, 978, 1053, 2060, 2237
MaeII	ACGT	4 cut(s)	213, 234, 1687, 1769
MaeIII	GTNAC	7 cut(s)	952, 1266, 1321, 1781, 1944, 2398, 2628
MfeI	CAATTG	5 cut(s)	35, 438, 2031, 2365, 2749
MflI	RGATCY	3 cut(s)	415, 2062, 2334
MhlI	GDGCHC	9 cut(s)	147, 608, 744, 772, 831, 994, 1536, 1830, 2363
MlsI	TGGCCA	1 cut(s)	366
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	2 cut(s)	2050, 2466
MmeI	TCCRAC	5 cut(s)	219, 243, 993, 1282, 2488
Mox20I	TGGCCA	1 cut(s)	366
Mph1103I	ATGCAT	2 cut(s)	341, 1524
MroI	TCCGGA	1 cut(s)	1804
MroXI	GAANNNNTTC	2 cut(s)	852, 1659
MscI	TGGCCA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	1986
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	3 cut(s)	1264, 2014, 2725
MspI	CCGG	2 cut(s)	1805, 2792
MspR9I	CCNGG	2 cut(s)	2282, 2792
MunI	CAATTG	5 cut(s)	35, 438, 2031, 2365, 2749
Mva1269I	GAATGC	4 cut(s)	339, 1571, 2302, 2583
MvaI	CCWGG	1 cut(s)	2282
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	9 cut(s)	137, 440, 665, 1618, 1912, 2020, 2186, 2195, 2358
NciI	CCSGG	1 cut(s)	2792
NcoI	CCATGG	1 cut(s)	1956
NlaIII	CATG	9 cut(s)	574, 1174, 1526, 1933, 1960, 1991, 2122, 2606, 2647
NlaIV	GGNNCC	6 cut(s)	769, 881, 1101, 1514, 2461, 2462
NmeAIII	GCCGAG	1 cut(s)	1760
NmuCI	GTSAC	3 cut(s)	952, 1781, 2628
NruI	TCGCGA	1 cut(s)	393
NsbI	TGCGCA	1 cut(s)	569
NsiI	ATGCAT	2 cut(s)	341, 1524
NspI	RCATGY	1 cut(s)	574
NspV	TTCGAA	1 cut(s)	797
PacI	TTAATTAA	1 cut(s)	2385
PaeR7I	CTCGAG	1 cut(s)	2564
PagI	TCATGA	1 cut(s)	2602
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	4 cut(s)	339, 1571, 2302, 2583
PdmI	GAANNNNTTC	2 cut(s)	852, 1659
PfeI	GAWTC	4 cut(s)	179, 639, 1436, 2324
PflMI	CCANNNNNTGG	1 cut(s)	2673
PfoI	TCCNGGA	1 cut(s)	2280
PkrI	GCNGC	7 cut(s)	1980, 2010, 2013, 2179, 2351, 2724, 2727
Ple19I	CGATCG	1 cut(s)	2868
PleI	GAGTC	2 cut(s)	2050, 2466
PpsI	GAGTC	2 cut(s)	2050, 2466
PpuMI	RGGWCCY	1 cut(s)	2460
Psp124BI	GAGCTC	1 cut(s)	744
Psp5II	RGGWCCY	1 cut(s)	2460
Psp6I	CCWGG	1 cut(s)	2280
PspGI	CCWGG	1 cut(s)	2280
PspN4I	GGNNCC	6 cut(s)	769, 881, 1101, 1514, 2461, 2462
PspPI	GGNCC	5 cut(s)	1695, 2370, 2460, 2789, 2799
PspPPI	RGGWCCY	1 cut(s)	2460
PspXI	VCTCGAGB	1 cut(s)	2564
PsuI	RGATCY	3 cut(s)	415, 2062, 2334
PvuI	CGATCG	1 cut(s)	2868
RruI	TCGCGA	1 cut(s)	393
RsaI	GTAC	4 cut(s)	63, 487, 2275, 2519
RsaNI	GTAC	4 cut(s)	62, 486, 2274, 2518
RseI	CAYNNNNRTG	1 cut(s)	1986
SacI	GAGCTC	1 cut(s)	744
SalI	GTCGAC	1 cut(s)	375
SatI	GCNGC	7 cut(s)	1979, 2009, 2012, 2178, 2350, 2723, 2726
Sau96I	GGNCC	5 cut(s)	1695, 2370, 2460, 2789, 2799
ScaI	AGTACT	1 cut(s)	2519
SchI	GAGTC	2 cut(s)	2050, 2466
ScrFI	CCNGG	2 cut(s)	2282, 2792
SduI	GDGCHC	9 cut(s)	147, 608, 744, 772, 831, 994, 1536, 1830, 2363
SfaNI	GCATC	4 cut(s)	142, 1990, 2176, 2605
SfcI	CTRYAG	1 cut(s)	933
Sfr274I	CTCGAG	1 cut(s)	2564
SfuI	TTCGAA	1 cut(s)	797
SinI	GGWCC	4 cut(s)	1695, 2370, 2460, 2799
SlaI	CTCGAG	1 cut(s)	2564
SmiMI	CAYNNNNRTG	1 cut(s)	1986
SmlI	CTYRAG	4 cut(s)	1831, 2338, 2465, 2564
SmoI	CTYRAG	4 cut(s)	1831, 2338, 2465, 2564
SsiI	CCGC	9 cut(s)	1262, 1303, 1693, 1818, 2009, 2012, 2189, 2581, 2723
SspI	AATATT	1 cut(s)	1550
SspMI	CTAG	7 cut(s)	29, 665, 806, 978, 1053, 2060, 2237
SstI	GAGCTC	1 cut(s)	744
StyD4I	CCNGG	2 cut(s)	2280, 2790
StyI	CCWWGG	2 cut(s)	1956, 2711
TaaI	ACNGT	2 cut(s)	1512, 2071
TaiI	ACGT	4 cut(s)	216, 237, 1690, 1772
TaqI	TCGA	8 cut(s)	376, 525, 797, 1446, 2244, 2565, 2864, 2868
TatI	WGTACW	1 cut(s)	2517
TauI	GCSGC	3 cut(s)	2011, 2014, 2725
TfiI	GAWTC	4 cut(s)	179, 639, 1436, 2324
TscAI	CASTG	3 cut(s)	259, 1685, 2700
TseFI	GTSAC	3 cut(s)	952, 1781, 2628
TseI	GCWGC	4 cut(s)	1978, 2177, 2349, 2725
Tsp45I	GTSAC	3 cut(s)	952, 1781, 2628
TspGWI	ACGGA	4 cut(s)	10, 172, 2068, 2347
TspRI	CASTG	3 cut(s)	259, 1685, 2700
Van91I	CCANNNNNTGG	1 cut(s)	2673
VneI	GTGCAC	3 cut(s)	827, 1532, 1826
VpaK11BI	GGWCC	4 cut(s)	1695, 2370, 2460, 2799
XagI	CCTNNNNNAGG	1 cut(s)	624
XbaI	TCTAGA	1 cut(s)	2059
XceI	RCATGY	1 cut(s)	574
XhoI	CTCGAG	1 cut(s)	2564
XmiI	GTMKAC	3 cut(s)	376, 473, 2050
XmnI	GAANNNNTTC	2 cut(s)	852, 1659
XspI	CTAG	7 cut(s)	29, 665, 806, 978, 1053, 2060, 2237
ZrmI	AGTACT	1 cut(s)	2519
Zsp2I	ATGCAT	2 cut(s)	341, 1524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.