Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005263

Physical Location & Seq

Genomic Coordinates Forward (+)

16234539 .. 16237306

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g18780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAGTTCTGCATGCAACTCTCTCTGGTTTTAGTTCTTTCTGTGTTTGTTGTTCCAGCAGCTGTGCTGTCAGATTCCTCTCTGAGCTCAAATGGGGTCTCAGAAATCCCCAAGAAGCTGCTCAATTGTGCCCAGAGACCCCAGGTGTTTGATTGGATGGTGGGAATCAGGAGGAAAATACATGAAAACCCAGAACTGGGTTATGAGGAATTTGAGACCAGTGAGCTGATCAGAGCAGAATTGGATAAAATGGGTATTAAATATAAACACCCAATTGGGGTTACTGGTGTTGTAGGCTTCATTGGCACCCGAAAACCGCCTTTCGTCGCAATCAGAGCTGATATGGATGCTCTGGCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAAATGCAGGGAAAATGCATGCTTGCGGGCACGATGCTCATGTTGCAATGCTTCTTGGTGCTGCAAAGATCGATCTTAAAGACCATGAGAAAGATTTGCAGGGAACAGTTGTTCTTGTATTTCAACCAGCGGAGGAAGGAGGAGCAGGGGCTAAGAAAATGATAGCTGGTGGAGCGTTAGAGAATGTTAGTGCTATTTTTGGGTTGCATGTTGCTAACCACATACCTGTTGCTGAAGTGGCCTCCAGACCTGGTCCCTTTTTTGCTGGGAGTGGCTTCTTTGAAGCGACAATAAGTGGAAAAGGCGGTCATGCAGCCCTTCCTCACCATGCTGTTGACCCGATACTGGCAGCTTCTAATGTGATTGTCAGCTTGCAACATCTTGTTTCGCGTGAAGCTGATCCACTTGACTCGCAGGTAGTCACCGTTGGAAAGTTTCAAGGAGGTGATGCATTCAATGTTATTCCAGATTCTGTCAAAATAGGTGGTACTTTCCGTGCATTTACAATGAAAAGCCTAATGCAACTCAAGCAGCGGATTAAGCAGGTTATAACAGGACAAGCATCCGTACATAGGTGCATCGCAACTGTCAATTTCTTTGAAGATGAGAAACCTATTTCCCCCCCAACCATAAACCATAACGACTTGCATGAACACTTCCGAAATGTAGCTGGAGATATGCTTGGCTTCCAAAAGGTCAAAGACCATCAACCATTGATGGGATCCGAGGATTTTGCATATTACCAAGAGGCAATACCTGGATACTTTTTCTTGCTTGGAATGGCAGATGACGCACTTGGACCCCTGCCTACACCTCATTCACCTCACTTCCGAATCAATGAAGATGCACTTCCTTTTGGTGCTGCGCTCCATGCTGCTTTCGCTGTTAGGTATTTGCTCGAGTTTCCACAGGAAGTTCCTTCGCCAGCGCAAGAACACCACGATGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0010112 GO:0010178 GO:0010179 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0071944 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

448

Amino Acids

48.67

Weight (kDa)

5.89

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51760 AT1G51780
fragaria_vesca	FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830
malus_domestica	MD09G1197800.v1.1 MD17G1178700.v1.1
prunus_persica	Prupe.3G053700_v2.0.a1
pyrus_communis	pycom17g18780
rosa_chinensis	RchiOBHm_Chr2g0142041
rosa_laevigata	RLG00000019947
rosa_multiflora	Rmu_sc0004757.1_g000007
rosa_roxburghii	Rroxscaffold_2G00103650
rosa_rugosa	Rorug02G0369800 Rorug02G0369900 Rorug02G0370000
rosa_samantha	Rh2AG422500 Rh2BG432700 Rh2CG409400 Rh2DG442400
rosa_wichuraiana	Rw2G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	941, 1342
Acc36I	ACCTGC	2 cut(s)	796, 925
AccB1I	GGYRCC	1 cut(s)	305
AccII	CGCG	1 cut(s)	781
AciI	CCGC	5 cut(s)	317, 417, 521, 696, 925
AclWI	GGATC	3 cut(s)	785, 1107, 1120
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	2 cut(s)	880, 960
AfiI	CCNNNNNNNGG	6 cut(s)	196, 197, 277, 736, 963, 1109
AgsI	TTSAA	5 cut(s)	515, 674, 830, 847, 992
AjnI	CCWGG	3 cut(s)	141, 640, 1147
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
Alw21I	GWGCWC	2 cut(s)	89, 384
Alw26I	GTCTC	3 cut(s)	103, 130, 209
AlwI	GGATC	3 cut(s)	785, 1107, 1120
AlwNI	CAGNNNCTG	2 cut(s)	62, 863
Ama87I	CYCGRG	1 cut(s)	1289
AoxI	GGCC	1 cut(s)	630
ApeKI	GCWGC	8 cut(s)	59, 118, 452, 704, 740, 922, 1253, 1265
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	2 cut(s)	1258, 1321
AspS9I	GGNCC	2 cut(s)	644, 1190
AsuHPI	GGTGA	4 cut(s)	707, 805, 848, 1203
AvaI	CYCGRG	1 cut(s)	1289
AvaII	GGWCC	2 cut(s)	644, 1190
BaeGI	GKGCMC	2 cut(s)	133, 423
BamHI	GGATCC	1 cut(s)	1112
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	89, 384
BbvI	GCAGC	8 cut(s)	71, 105, 439, 716, 752, 934, 1240, 1252
BccI	CCATC	3 cut(s)	151, 1102, 1104
BcgI	CGANNNNNNTGC	2 cut(s)	1106, 1140
BciT130I	CCWGG	3 cut(s)	143, 642, 1149
BciVI	GTATCC	1 cut(s)	1145
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	103, 130, 209
BfuAI	ACCTGC	2 cut(s)	796, 925
BfuI	GTATCC	1 cut(s)	1145
BisI	GCNGC	8 cut(s)	60, 119, 453, 705, 741, 923, 1254, 1266
BlsI	GCNGC	8 cut(s)	61, 120, 454, 706, 742, 924, 1255, 1267
Bme1390I	CCNGG	3 cut(s)	143, 642, 1149
Bme18I	GGWCC	2 cut(s)	644, 1190
BmeT110I	CYCGRG	1 cut(s)	1289
BmgT120I	GGNCC	2 cut(s)	644, 1190
BmiI	GGNNCC	4 cut(s)	307, 646, 1114, 1192
BmrFI	CCNGG	3 cut(s)	143, 642, 1149
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	6 cut(s)	337, 415, 829, 962, 978, 1225
BmuI	ACTGGG	1 cut(s)	206
BpmI	CTGGAG	2 cut(s)	619, 1083
BpuEI	CTTGAG	1 cut(s)	902
Bsa29I	ATCGAT	1 cut(s)	462
BsaI	GGTCTC	3 cut(s)	103, 130, 209
BsaJI	CCNNGG	2 cut(s)	141, 1116
Bsc4I	CCNNNNNNNGG	6 cut(s)	196, 197, 277, 736, 963, 1109
Bse1I	ACTGG	4 cut(s)	201, 219, 289, 741
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	3 cut(s)	143, 642, 1149
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	141, 1116
BseGI	GGATG	3 cut(s)	162, 352, 953
BseLI	CCNNNNNNNGG	6 cut(s)	196, 197, 277, 736, 963, 1109
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	74, 114
BseNI	ACTGG	4 cut(s)	201, 219, 289, 741
BseRI	GAGGAG	1 cut(s)	546
BseSI	GKGCMC	2 cut(s)	133, 423
BseXI	GCAGC	8 cut(s)	71, 105, 439, 716, 752, 934, 1240, 1252
BseYI	CCCAGC	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	781
BshFI	GGCC	1 cut(s)	632
BshNI	GGYRCC	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	462
BsiHKAI	GWGCWC	2 cut(s)	89, 384
BsiHKCI	CYCGRG	1 cut(s)	1289
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	6 cut(s)	196, 197, 277, 736, 963, 1109
BsmAI	GTCTC	3 cut(s)	103, 130, 209
BsmFI	GGGAC	1 cut(s)	630
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	1 cut(s)	632
Bso31I	GGTCTC	3 cut(s)	103, 130, 209
BsoBI	CYCGRG	1 cut(s)	1289
Bsp1286I	GDGCHC	4 cut(s)	89, 133, 384, 423
Bsp143I	GATC	5 cut(s)	228, 459, 463, 790, 1112
BspACI	CCGC	5 cut(s)	317, 417, 521, 696, 925
BspANI	GGCC	1 cut(s)	632
BspCNI	CTCAG	2 cut(s)	75, 113
BspDI	ATCGAT	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	781
BspLI	GGNNCC	4 cut(s)	307, 646, 1114, 1192
BspMI	ACCTGC	2 cut(s)	796, 925
BspPI	GGATC	3 cut(s)	785, 1107, 1120
BspT107I	GGYRCC	1 cut(s)	305
BspTNI	GGTCTC	3 cut(s)	103, 130, 209
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	4 cut(s)	201, 219, 289, 741
BssECI	CCNNGG	2 cut(s)	141, 1116
BssMI	GATC	5 cut(s)	228, 459, 463, 790, 1112
Bst2UI	CCWGG	3 cut(s)	143, 642, 1149
Bst4CI	ACNGT	3 cut(s)	499, 817, 979
BstC8I	GCNNGC	6 cut(s)	14, 411, 415, 419, 764, 1317
BstDEI	CTNAG	3 cut(s)	83, 100, 543
BstF5I	GGATG	3 cut(s)	162, 352, 953
BstFNI	CGCG	1 cut(s)	781
BstHHI	GCGC	2 cut(s)	1258, 1321
BstKTI	GATC	5 cut(s)	231, 462, 466, 793, 1115
BstMAI	GTCTC	3 cut(s)	103, 130, 209
BstMBI	GATC	5 cut(s)	228, 459, 463, 790, 1112
BstNI	CCWGG	3 cut(s)	143, 642, 1149
BstNSI	RCATGY	3 cut(s)	16, 413, 602
BstSCI	CCNGG	3 cut(s)	141, 640, 1147
BstSLI	GKGCMC	2 cut(s)	133, 423
BstUI	CGCG	1 cut(s)	781
BstV1I	GCAGC	8 cut(s)	71, 105, 439, 716, 752, 934, 1240, 1252
BstX2I	RGATCY	1 cut(s)	1112
BstYI	RGATCY	1 cut(s)	1112
Bsu15I	ATCGAT	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	1145
BsuRI	GGCC	1 cut(s)	632
BsuTUI	ATCGAT	1 cut(s)	462
BtgZI	GCGATG	1 cut(s)	955
BtsCI	GGATG	3 cut(s)	162, 352, 953
BtsIMutI	CAGTG	1 cut(s)	226
BveI	ACCTGC	2 cut(s)	796, 925
Cac8I	GCNNGC	6 cut(s)	14, 411, 415, 419, 764, 1317
CaiI	CAGNNNCTG	2 cut(s)	62, 863
CfoI	GCGC	2 cut(s)	1258, 1321
Cfr13I	GGNCC	2 cut(s)	644, 1190
ClaI	ATCGAT	1 cut(s)	462
CseI	GACGC	1 cut(s)	1190
CsiI	ACCWGGT	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	879, 959
CspCI	CAANNNNNGTGG	2 cut(s)	856, 891
CviQI	GTAC	2 cut(s)	879, 959
DdeI	CTNAG	3 cut(s)	83, 100, 543
DpnI	GATC	5 cut(s)	230, 461, 465, 792, 1114
DpnII	GATC	5 cut(s)	228, 459, 463, 790, 1112
Ecl136II	GAGCTC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	89
Eco31I	GGTCTC	3 cut(s)	103, 130, 209
Eco47I	GGWCC	2 cut(s)	644, 1190
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	645
Eco88I	CYCGRG	1 cut(s)	1289
EcoICRI	GAGCTC	1 cut(s)	87
EcoRII	CCWGG	3 cut(s)	141, 640, 1147
EcoT22I	ATGCAT	2 cut(s)	411, 844
EcoT38I	GRGCYC	1 cut(s)	89
FalI	AAGNNNNNCTT	2 cut(s)	1224, 1256
FaqI	GGGAC	1 cut(s)	630
FauI	CCCGC	1 cut(s)	410
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	8 cut(s)	60, 119, 453, 705, 741, 923, 1254, 1266
FokI	GGATG	3 cut(s)	169, 359, 940
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	8 cut(s)	60, 119, 453, 705, 741, 923, 1254, 1266
GlaI	GCGC	2 cut(s)	1257, 1320
GluI	GCNGC	8 cut(s)	60, 119, 453, 705, 741, 923, 1254, 1266
GsaI	CCCAGC	1 cut(s)	660
GsuI	CTGGAG	2 cut(s)	619, 1083
HaeIII	GGCC	1 cut(s)	632
HgaI	GACGC	1 cut(s)	1190
HhaI	GCGC	2 cut(s)	1258, 1321
Hin6I	GCGC	2 cut(s)	1256, 1319
HinP1I	GCGC	2 cut(s)	1256, 1319
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	5 cut(s)	74, 165, 800, 860, 1224
HphI	GGTGA	4 cut(s)	707, 805, 848, 1203
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	8 cut(s)	73, 84, 103, 233, 335, 1052, 1117, 1223
Hpy188III	TCNNGA	3 cut(s)	169, 636, 857
Hpy8I	GTNNAC	1 cut(s)	727
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	3 cut(s)	521, 719, 1320
HpyCH4III	ACNGT	3 cut(s)	499, 817, 979
HpyF3I	CTNAG	3 cut(s)	83, 100, 543
HspAI	GCGC	2 cut(s)	1256, 1319
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	228, 459, 463, 790, 1112
LmnI	GCTCC	4 cut(s)	379, 533, 563, 1263
Lsp1109I	GCAGC	8 cut(s)	71, 105, 439, 716, 752, 934, 1240, 1252
LweI	GCATC	6 cut(s)	337, 415, 829, 962, 978, 1225
MabI	ACCWGGT	1 cut(s)	640
MaeIII	GTNAC	2 cut(s)	280, 811
MalI	GATC	5 cut(s)	230, 461, 465, 792, 1114
MboI	GATC	5 cut(s)	228, 459, 463, 790, 1112
MboII	GAAGA	2 cut(s)	1004, 1244
MfeI	CAATTG	2 cut(s)	124, 273
MflI	RGATCY	1 cut(s)	1112
MhlI	GDGCHC	4 cut(s)	89, 133, 384, 423
MluCI	AATT	6 cut(s)	124, 209, 239, 273, 982, 1337
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	1 cut(s)	799
Mph1103I	ATGCAT	2 cut(s)	411, 844
MseI	TTAA	3 cut(s)	258, 468, 930
MslI	CAYNNNNRTG	1 cut(s)	1332
MspA1I	CMGCKG	3 cut(s)	62, 521, 925
MspR9I	CCNGG	3 cut(s)	143, 642, 1149
MunI	CAATTG	2 cut(s)	124, 273
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	3 cut(s)	143, 642, 1149
MvnI	CGCG	1 cut(s)	781
NdeII	GATC	5 cut(s)	228, 459, 463, 790, 1112
NlaIV	GGNNCC	4 cut(s)	307, 646, 1114, 1192
NmuCI	GTSAC	1 cut(s)	811
NsiI	ATGCAT	2 cut(s)	411, 844
NspI	RCATGY	3 cut(s)	16, 413, 602
PaeI	GCATGC	2 cut(s)	16, 413
PaeR7I	CTCGAG	1 cut(s)	1289
PctI	GAATGC	1 cut(s)	842
PfeI	GAWTC	4 cut(s)	74, 165, 860, 1224
PflFI	GACNNNGTC	1 cut(s)	642
PkrI	GCNGC	8 cut(s)	61, 120, 454, 706, 742, 924, 1255, 1267
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
PsiI	TTATAA	2 cut(s)	941, 1342
Psp124BI	GAGCTC	1 cut(s)	89
Psp6I	CCWGG	3 cut(s)	141, 640, 1147
PspFI	CCCAGC	1 cut(s)	656
PspGI	CCWGG	3 cut(s)	141, 640, 1147
PspN4I	GGNNCC	4 cut(s)	307, 646, 1114, 1192
PspPI	GGNCC	2 cut(s)	644, 1190
PspXI	VCTCGAGB	1 cut(s)	1289
PstNI	CAGNNNCTG	2 cut(s)	62, 863
PsuI	RGATCY	1 cut(s)	1112
PsyI	GACNNNGTC	1 cut(s)	642
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	880, 960
RsaNI	GTAC	2 cut(s)	879, 959
RseI	CAYNNNNRTG	1 cut(s)	1332
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	258, 468, 930
SatI	GCNGC	8 cut(s)	60, 119, 453, 705, 741, 923, 1254, 1266
Sau3AI	GATC	5 cut(s)	228, 459, 463, 790, 1112
Sau96I	GGNCC	2 cut(s)	644, 1190
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	3 cut(s)	143, 642, 1149
SduI	GDGCHC	4 cut(s)	89, 133, 384, 423
SexAI	ACCWGGT	1 cut(s)	640
SfaNI	GCATC	6 cut(s)	337, 415, 829, 962, 978, 1225
Sfr274I	CTCGAG	1 cut(s)	1289
SinI	GGWCC	2 cut(s)	644, 1190
SlaI	CTCGAG	1 cut(s)	1289
SmiMI	CAYNNNNRTG	1 cut(s)	1332
SmlI	CTYRAG	2 cut(s)	917, 1289
SmoI	CTYRAG	2 cut(s)	917, 1289
SphI	GCATGC	2 cut(s)	16, 413
Sse9I	AATT	6 cut(s)	124, 209, 239, 273, 982, 1337
SsiI	CCGC	5 cut(s)	317, 417, 521, 696, 925
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	141, 640, 1147
TaaI	ACNGT	3 cut(s)	499, 817, 979
TaqI	TCGA	2 cut(s)	462, 1290
TasI	AATT	6 cut(s)	124, 209, 239, 273, 982, 1337
TfiI	GAWTC	4 cut(s)	74, 165, 860, 1224
Tru1I	TTAA	3 cut(s)	258, 468, 930
Tru9I	TTAA	3 cut(s)	258, 468, 930
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	8 cut(s)	59, 118, 452, 704, 740, 922, 1253, 1265
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	5 cut(s)	198, 289, 914, 1056, 1245
TspGWI	ACGGA	2 cut(s)	875, 946
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	642
VpaK11BI	GGWCC	2 cut(s)	644, 1190
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	3 cut(s)	16, 413, 602
XhoI	CTCGAG	1 cut(s)	1289
Zsp2I	ATGCAT	2 cut(s)	411, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.