Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005263

Physical Location & Seq

Genomic Coordinates Reverse (-)

64269007 .. 64274618

Gene Structure 5612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG442400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAGTTCATGTGGGTCTTTTTGATTGTACTATTAAGTCTGCTTACTGGTCCTACACCTATACTCTCAGATTCCTCTTTGAGTTCAAATGGGTTCTCAGAAATCCCCAAAAAGTTACTCACTTTAGCCCAGAAACCTGAGCTGTTTGAGTGGATGGTGGGCATCAGAAGGAAGATACATGAAAACCCAGAACTAGGTTATGAGGAATTTGAGACCAGTAAGCTGATCAGAGCAGAATTGGACAAGATGGGTGTTGCATATAAGTACCCAGTTGCAGTTACTGGGGTTGTAGGTTCCATTGGGACTGGAAAGCCTCCTTTTGTTGCAATCAGAGCTGACATGGATGCTCTGGCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAATCCCTGGGAAAATGCATGGTTGTGGGCATGATGCTCATGTTGCAATGCTTCTTGGTGCTGCAAAGATCCTTAAAGAGCATGAGAAAGATTTACAGGGAACAATTGTTCTTGTATTTCAACCAGCAGAGGAAGGAGGAGGTGGAGCTAAGAAAGTATTAGATGCCGGAGCATTAGAGAATGTTACTGCTATTTTCGGGTTGCATGTTGCCCACCATATTCCTTTAGCTGAAGTAGCCTCTAGACCTGGTCCCTTTTTTGCTGGGAGTGGCTTCTTTGAAGCAACAATAAGCGGAAAAGGAGGTCATGCAGCCCTTCCTCATCATGCGGTTGATCCAATACTCGCAGTTTCAAATGTGATTGGTAGCTTACAACATATTGTCTCACGTGAAGTTGATCCACTCGACTCTCAGGTAAAAATCCCCTTTGTTCCATGTCCAAAATTATGGCTTGCTTTAAGCCCATGTATCTACAAAATCTGTTATGTTCTTATGTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0010112 GO:0010178 GO:0010179 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0071944 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

296

Amino Acids

32.16

Weight (kDa)

6.22

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	109 - 232	1.5e-28	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51760 AT1G51780
fragaria_vesca	FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830
malus_domestica	MD09G1197800.v1.1 MD17G1178700.v1.1
prunus_persica	Prupe.3G053700_v2.0.a1
pyrus_communis	pycom17g18780
rosa_chinensis	RchiOBHm_Chr2g0142041
rosa_laevigata	RLG00000019947
rosa_multiflora	Rmu_sc0004757.1_g000007
rosa_roxburghii	Rroxscaffold_2G00103650
rosa_rugosa	Rorug02G0369800 Rorug02G0369900 Rorug02G0370000
rosa_samantha	Rh2AG422500 Rh2BG432700 Rh2CG409400 Rh2DG442400
rosa_wichuraiana	Rw2G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	681, 716
AclWI	GGATC	3 cut(s)	451, 716, 779
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	639
AcvI	CACGTG	1 cut(s)	776
AfaI	GTAC	2 cut(s)	30, 266
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	87, 509, 668, 741
AjnI	CCWGG	2 cut(s)	394, 634
AloI	GAACNNNNNNTCC	2 cut(s)	480, 512
AluBI	AGCT	6 cut(s)	142, 223, 335, 536, 617, 756
AluI	AGCT	6 cut(s)	142, 223, 335, 536, 617, 756
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	206, 775
AlwI	GGATC	3 cut(s)	451, 716, 779
AlwNI	CAGNNNCTG	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	449, 698
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	50, 638
AvaII	GGWCC	2 cut(s)	50, 638
BbrPI	CACGTG	1 cut(s)	776
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	436, 710
BccI	CCATC	2 cut(s)	148, 241
BciT130I	CCWGG	2 cut(s)	396, 636
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	2 cut(s)	206, 775
BfaI	CTAG	2 cut(s)	194, 630
BisI	GCNGC	2 cut(s)	450, 699
BlsI	GCNGC	2 cut(s)	451, 700
Bme1390I	CCNGG	2 cut(s)	396, 636
Bme18I	GGWCC	2 cut(s)	50, 638
BmgT120I	GGNCC	2 cut(s)	50, 638
BmiI	GGNNCC	2 cut(s)	295, 640
BmrFI	CCNGG	2 cut(s)	396, 636
BmrI	ACTGGG	2 cut(s)	263, 291
BmsI	GCATC	4 cut(s)	171, 334, 412, 541
BmuI	ACTGGG	2 cut(s)	263, 291
Bpu10I	CCTNAGC	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	394, 395
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	5 cut(s)	52, 216, 269, 286, 310
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	396, 636
BseDI	CCNNGG	2 cut(s)	394, 395
BseGI	GGATG	2 cut(s)	159, 349
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	4 cut(s)	81, 111, 129, 812
BseNI	ACTGG	5 cut(s)	52, 216, 269, 286, 310
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	2 cut(s)	436, 710
BseYI	CCCAGC	1 cut(s)	650
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	555
BslFI	GGGAC	2 cut(s)	316, 624
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	206, 775
BsmFI	GGGAC	2 cut(s)	316, 624
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	225, 456, 721, 784
BspACI	CCGC	2 cut(s)	681, 716
BspCNI	CTCAG	4 cut(s)	80, 110, 130, 811
BspLI	GGNNCC	2 cut(s)	295, 640
BspPI	GGATC	3 cut(s)	451, 716, 779
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	5 cut(s)	52, 216, 269, 286, 310
BssECI	CCNNGG	2 cut(s)	394, 395
BssMI	GATC	4 cut(s)	225, 456, 721, 784
Bst2UI	CCWGG	2 cut(s)	396, 636
BstBAI	YACGTR	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	840
BstDEI	CTNAG	5 cut(s)	67, 97, 138, 537, 798
BstF5I	GGATG	2 cut(s)	159, 349
BstKTI	GATC	4 cut(s)	228, 459, 724, 787
BstMAI	GTCTC	2 cut(s)	206, 775
BstMBI	GATC	4 cut(s)	225, 456, 721, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 431, 623
BstNI	CCWGG	2 cut(s)	396, 636
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	2 cut(s)	394, 634
BstV1I	GCAGC	2 cut(s)	436, 710
BstX2I	RGATCY	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	834
BstYI	RGATCY	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	159, 349
Cac8I	GCNNGC	1 cut(s)	840
CaiI	CAGNNNCTG	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	50, 638
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	29, 265
CviQI	GTAC	2 cut(s)	29, 265
DdeI	CTNAG	5 cut(s)	67, 97, 138, 537, 798
DpnI	GATC	4 cut(s)	227, 458, 723, 786
DpnII	GATC	4 cut(s)	225, 456, 721, 784
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	50, 638
Eco57I	CTGAAG	1 cut(s)	639
Eco72I	CACGTG	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	394, 634
EcoT22I	ATGCAT	1 cut(s)	408
FaqI	GGGAC	2 cut(s)	316, 624
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	450, 699
FokI	GGATG	2 cut(s)	166, 356
Fsp4HI	GCNGC	2 cut(s)	450, 699
FspBI	CTAG	2 cut(s)	194, 630
GluI	GCNGC	2 cut(s)	450, 699
GsaI	CCCAGC	1 cut(s)	654
HapII	CCGG	1 cut(s)	555
HinfI	GANTC	2 cut(s)	71, 794
HpaII	CCGG	1 cut(s)	555
Hpy188I	TCNGA	5 cut(s)	70, 100, 167, 230, 332
Hpy188III	TCNNGA	1 cut(s)	630
HpyAV	CCTTC	3 cut(s)	162, 515, 713
HpyCH4IV	ACGT	1 cut(s)	775
HpyCH4V	TGCA	9 cut(s)	257, 275, 326, 358, 406, 434, 452, 592, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 431, 623
HpyF3I	CTNAG	5 cut(s)	67, 97, 138, 537, 798
HpySE526I	ACGT	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	225, 456, 721, 784
LmnI	GCTCC	3 cut(s)	376, 533, 557
Lsp1109I	GCAGC	2 cut(s)	436, 710
LweI	GCATC	4 cut(s)	171, 334, 412, 541
MabI	ACCWGGT	1 cut(s)	634
MaeI	CTAG	2 cut(s)	194, 630
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	3 cut(s)	114, 277, 571
MalI	GATC	4 cut(s)	227, 458, 723, 786
MboI	GATC	4 cut(s)	225, 456, 721, 784
MboII	GAAGA	1 cut(s)	184
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	4 cut(s)	206, 236, 492, 830
MlyI	GAGTC	1 cut(s)	788
MnlI	CCTC	9 cut(s)	85, 196, 324, 511, 518, 521, 637, 683, 717
Mph1103I	ATGCAT	1 cut(s)	408
MseI	TTAA	4 cut(s)	35, 462, 845, 889
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	2 cut(s)	396, 636
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	396, 636
MwoI	GCNNNNNNNGC	3 cut(s)	332, 431, 623
NdeII	GATC	4 cut(s)	225, 456, 721, 784
NlaIV	GGNNCC	2 cut(s)	295, 640
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	1 cut(s)	596
PasI	CCCWGGG	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	636
PkrI	GCNGC	2 cut(s)	451, 700
PleI	GAGTC	1 cut(s)	788
PmaCI	CACGTG	1 cut(s)	776
PmlI	CACGTG	1 cut(s)	776
PpsI	GAGTC	1 cut(s)	788
Ppu21I	YACGTR	1 cut(s)	776
Psp6I	CCWGG	2 cut(s)	394, 634
PspCI	CACGTG	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	650
PspGI	CCWGG	2 cut(s)	394, 634
PspN4I	GGNNCC	2 cut(s)	295, 640
PspPI	GGNCC	2 cut(s)	50, 638
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	456
PsyI	GACNNNGTC	1 cut(s)	636
RsaI	GTAC	2 cut(s)	30, 266
RsaNI	GTAC	2 cut(s)	29, 265
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	35, 462, 845, 889
SatI	GCNGC	2 cut(s)	450, 699
Sau3AI	GATC	4 cut(s)	225, 456, 721, 784
Sau96I	GGNCC	2 cut(s)	50, 638
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	2 cut(s)	396, 636
SduI	GDGCHC	1 cut(s)	381
SexAI	ACCWGGT	1 cut(s)	634
SfaNI	GCATC	4 cut(s)	171, 334, 412, 541
SinI	GGWCC	2 cut(s)	50, 638
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	4 cut(s)	206, 236, 492, 830
SsiI	CCGC	2 cut(s)	681, 716
SspMI	CTAG	2 cut(s)	194, 630
StyD4I	CCNGG	2 cut(s)	394, 634
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	1 cut(s)	792
TasI	AATT	4 cut(s)	206, 236, 492, 830
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	4 cut(s)	35, 462, 845, 889
Tru9I	TTAA	4 cut(s)	35, 462, 845, 889
TseI	GCWGC	2 cut(s)	449, 698
TspDTI	ATGAA	1 cut(s)	195
Tth111I	GACNNNGTC	1 cut(s)	636
VpaK11BI	GGWCC	2 cut(s)	50, 638
XapI	RAATTY	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	629
XceI	RCATGY	1 cut(s)	596
XspI	CTAG	2 cut(s)	194, 630
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.