Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005263

Physical Location & Seq

Genomic Coordinates Reverse (-)

59556968 .. 59560405

Gene Structure 3438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAGTTCATGTGGGTCTTTTTGATTGTACTATTAAGTCTGCTTGCTGGTCCTACACCTATACTCTCAGATTCCTCTTTGAGTTCAAATGGGTTCTCAGAAATCCCCAAAAAGTTACTCACTTTAGCCCAGAAACCTGAGCTGTTTGAATGGATGGTGGGCATCAGAAGGAAGATACATGAAAACCCAGAACTAGGTTATGAGGAATTTGAGACCAGTAAGCTGATCAGAGCAGAATTGGACAAGATGGGTGTTGCATATAAGTACCCAGTTGCAGTTACTGGGGTTGTAGGTTCCATTGGGACTGGAAAGCCTCCTTTTGTTGCAATCAGAGCTGACATGGATGCTCTGGCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAATCCCTGGGAAAATGCATGGTTGTGGGCATGATGCTCATGTTGCAATGCTTCTTGGTGCTGCAAAGATCCTTAAAGAGCATGAGAAAGATTTACAGGGAACAATTGTTCTTGTATTTCAACCAGCAGAGGAAGGAGGAGGTGGAGCTAAGAAAGTATTAGATGCCGGAGCATTACAGAATGTTACTGCTATTTTCGGGTTGCATGTTGCCCACCATATTCCTTTAGCTGAAGTAGCCTCTAGACCTGGTCCCTTTTTTGCTGGGAGTGGCTTCTTTGAAGCAACAATAAGCGGAAAAGGAGGTCATGCAGCCCTTCCTCATCATGCGGTTGATCCAATACTCGCAGTTTCAAATGTGATTGGTAGCTTACAACATATTGTCTCACGTGAAGTTGATCCACTCGACTCTCAGGTAGTGACAGTTGGAAAAGTTCAAGGAGGTGAAGCATTCAATGTCATTCCAGATTCTGTAACTATTGGTGGCACTTTCCGTGCCTTTTCAAAGGAGACCTTATTGCAACTCAAACAGCGCATAGCGAAGGTTATAACAGGGCAGGCTGCTGTACAAAGATGCAATGCAACGGTCAATTTCTTTGAAGATGAGAAACCTTTGTTCCCCCCGACAGTAAACCATAAGGAATTGCACAAACACTTTCAAAATGTCGCAGGAGATATGCTTGGCACGCACAGAGTCAAAGACCACCAGCCATTAATGGGATCCGAGGACTTTGCATATTACCAAGAGGCAATACCTGGATTCTTCTTCTTTCTTGGAATGAAGGATGACAGGCTTGGATATCTGGATACACCACACTCACCTTACTTCCGGATCAACGAGGATGCACTTCCATATGGTGCTGCACTTCATGCTTCTTTGGCTGTTAGGTATTTGATTGAAACTCAACTGGAGGTTCCTTTGCCAGAACAGCAAAATCGTGATGAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0010112 GO:0010178 GO:0010179 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0071944 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

445

Amino Acids

48.69

Weight (kDa)

5.92

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	109 - 423	2.9e-43	Peptidase family M20/M25/M40
M20_dimer	PF07687	218 - 313	5.6e-12	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51760 AT1G51780
fragaria_vesca	FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830
malus_domestica	MD09G1197800.v1.1 MD17G1178700.v1.1
prunus_persica	Prupe.3G053700_v2.0.a1
pyrus_communis	pycom17g18780
rosa_chinensis	RchiOBHm_Chr2g0142041
rosa_laevigata	RLG00000019947
rosa_multiflora	Rmu_sc0004757.1_g000007
rosa_roxburghii	Rroxscaffold_2G00103650
rosa_rugosa	Rorug02G0369800 Rorug02G0369900 Rorug02G0370000
rosa_samantha	Rh2AG422500 Rh2BG432700 Rh2CG409400 Rh2DG442400
rosa_wichuraiana	Rw2G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	935
AccIII	TCCGGA	1 cut(s)	1215
AciI	CCGC	2 cut(s)	681, 716
AclWI	GGATC	6 cut(s)	451, 716, 779, 1101, 1114, 1226
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	639
AcvI	CACGTG	1 cut(s)	776
AfaI	GTAC	3 cut(s)	30, 266, 954
AfiI	CCNNNNNNNGG	2 cut(s)	194, 1103
AjnI	CCWGG	3 cut(s)	394, 634, 1141
AloI	GAACNNNNNNTCC	2 cut(s)	480, 512
AluBI	AGCT	6 cut(s)	142, 223, 335, 536, 617, 756
AluI	AGCT	6 cut(s)	142, 223, 335, 536, 617, 756
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	3 cut(s)	206, 775, 890
AlwI	GGATC	6 cut(s)	451, 716, 779, 1101, 1114, 1226
AlwNI	CAGNNNCTG	2 cut(s)	281, 857
Aor13HI	TCCGGA	1 cut(s)	1215
ApeKI	GCWGC	4 cut(s)	449, 698, 947, 1247
ApoI	RAATTY	1 cut(s)	206
AseI	ATTAAT	1 cut(s)	1100
AspLEI	GCGC	1 cut(s)	921
AspS9I	GGNCC	2 cut(s)	50, 638
AsuHPI	GGTGA	2 cut(s)	842, 1197
AvaII	GGWCC	2 cut(s)	50, 638
BamHI	GGATCC	1 cut(s)	1106
BbrPI	CACGTG	1 cut(s)	776
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	436, 710, 934, 1234
BccI	CCATC	2 cut(s)	148, 241
BcgI	CGANNNNNNTGC	2 cut(s)	1100, 1134
BciT130I	CCWGG	3 cut(s)	396, 636, 1143
BciVI	GTATCC	1 cut(s)	1186
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	3 cut(s)	206, 775, 890
BfaI	CTAG	2 cut(s)	194, 630
BfuI	GTATCC	1 cut(s)	1186
BisI	GCNGC	4 cut(s)	450, 699, 948, 1248
BlsI	GCNGC	4 cut(s)	451, 700, 949, 1249
Bme1390I	CCNGG	3 cut(s)	396, 636, 1143
Bme18I	GGWCC	2 cut(s)	50, 638
BmgT120I	GGNCC	2 cut(s)	50, 638
BmiI	GGNNCC	4 cut(s)	295, 640, 1108, 1302
BmrFI	CCNGG	3 cut(s)	396, 636, 1143
BmrI	ACTGGG	2 cut(s)	263, 291
BmsI	GCATC	6 cut(s)	171, 334, 412, 541, 950, 1219
BmuI	ACTGGG	2 cut(s)	263, 291
BpmI	CTGGAG	1 cut(s)	1316
Bpu10I	CCTNAGC	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	776
BsaI	GGTCTC	2 cut(s)	206, 890
BsaJI	CCNNGG	3 cut(s)	394, 395, 1110
BsaWI	WCCGGW	1 cut(s)	1215
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 1103
Bse1I	ACTGG	5 cut(s)	216, 269, 286, 310, 1299
Bse3DI	GCAATG	2 cut(s)	441, 970
BseAI	TCCGGA	1 cut(s)	1215
BseBI	CCWGG	3 cut(s)	396, 636, 1143
BseDI	CCNNGG	3 cut(s)	394, 395, 1110
BseGI	GGATG	4 cut(s)	159, 349, 1177, 1234
BseLI	CCNNNNNNNGG	2 cut(s)	194, 1103
BseMI	GCAATG	2 cut(s)	441, 970
BseMII	CTCAG	4 cut(s)	81, 111, 129, 812
BseNI	ACTGG	5 cut(s)	216, 269, 286, 310, 1299
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	4 cut(s)	436, 710, 934, 1234
BseYI	CCCAGC	1 cut(s)	650
BsgI	GTGCAG	1 cut(s)	1233
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	555, 1216
BslFI	GGGAC	2 cut(s)	316, 624
BslI	CCNNNNNNNGG	2 cut(s)	194, 1103
BsmAI	GTCTC	3 cut(s)	206, 775, 890
BsmFI	GGGAC	2 cut(s)	316, 624
BsmI	GAATGC	1 cut(s)	836
Bso31I	GGTCTC	2 cut(s)	206, 890
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	1215
Bsp1407I	TGTACA	1 cut(s)	952
Bsp143I	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
BspACI	CCGC	2 cut(s)	681, 716
BspCNI	CTCAG	4 cut(s)	80, 110, 130, 811
BspEI	TCCGGA	1 cut(s)	1215
BspLI	GGNNCC	4 cut(s)	295, 640, 1108, 1302
BspPI	GGATC	6 cut(s)	451, 716, 779, 1101, 1114, 1226
BspTNI	GGTCTC	2 cut(s)	206, 890
BsrDI	GCAATG	2 cut(s)	441, 970
BsrGI	TGTACA	1 cut(s)	952
BsrI	ACTGG	5 cut(s)	216, 269, 286, 310, 1299
BssECI	CCNNGG	3 cut(s)	394, 395, 1110
BssMI	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
Bst2UI	CCWGG	3 cut(s)	396, 636, 1143
Bst4CI	ACNGT	3 cut(s)	811, 973, 1015
BstAPI	GCANNNNNTGC	1 cut(s)	1256
BstAUI	TGTACA	1 cut(s)	952
BstBAI	YACGTR	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	45, 945, 1073
BstDEI	CTNAG	5 cut(s)	67, 97, 138, 537, 798
BstF5I	GGATG	4 cut(s)	159, 349, 1177, 1234
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	6 cut(s)	228, 459, 724, 787, 1109, 1221
BstMAI	GTCTC	3 cut(s)	206, 775, 890
BstMBI	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
BstMWI	GCNNNNNNNGC	7 cut(s)	332, 431, 623, 1072, 1256, 1265, 1315
BstNI	CCWGG	3 cut(s)	396, 636, 1143
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	3 cut(s)	394, 634, 1141
BstV1I	GCAGC	4 cut(s)	436, 710, 934, 1234
BstX2I	RGATCY	2 cut(s)	456, 1106
BstYI	RGATCY	2 cut(s)	456, 1106
BsuI	GTATCC	1 cut(s)	1186
BtsCI	GGATG	4 cut(s)	159, 349, 1177, 1234
Cac8I	GCNNGC	3 cut(s)	45, 945, 1073
CaiI	CAGNNNCTG	2 cut(s)	281, 857
CfoI	GCGC	1 cut(s)	921
Cfr13I	GGNCC	2 cut(s)	50, 638
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	3 cut(s)	29, 265, 953
CviQI	GTAC	3 cut(s)	29, 265, 953
DdeI	CTNAG	5 cut(s)	67, 97, 138, 537, 798
DpnI	GATC	6 cut(s)	227, 458, 723, 786, 1108, 1220
DpnII	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
Eco31I	GGTCTC	2 cut(s)	206, 890
Eco32I	GATATC	1 cut(s)	1187
Eco47I	GGWCC	2 cut(s)	50, 638
Eco57I	CTGAAG	1 cut(s)	639
Eco72I	CACGTG	1 cut(s)	776
EcoRII	CCWGG	3 cut(s)	394, 634, 1141
EcoRV	GATATC	1 cut(s)	1187
EcoT22I	ATGCAT	1 cut(s)	408
FalI	AAGNNNNNCTT	2 cut(s)	884, 916
FaqI	GGGAC	2 cut(s)	316, 624
FauNDI	CATATG	1 cut(s)	1240
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	450, 699, 948, 1248
FokI	GGATG	4 cut(s)	166, 356, 1184, 1241
Fsp4HI	GCNGC	4 cut(s)	450, 699, 948, 1248
FspBI	CTAG	2 cut(s)	194, 630
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	4 cut(s)	450, 699, 948, 1248
GsaI	CCCAGC	1 cut(s)	654
GsuI	CTGGAG	1 cut(s)	1316
HapII	CCGG	2 cut(s)	555, 1216
HhaI	GCGC	1 cut(s)	921
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HinfI	GANTC	5 cut(s)	71, 794, 854, 1080, 1146
HpaII	CCGG	2 cut(s)	555, 1216
HphI	GGTGA	2 cut(s)	842, 1197
Hpy166II	GTNNAC	1 cut(s)	1018
Hpy188I	TCNGA	6 cut(s)	70, 100, 167, 230, 332, 1111
Hpy188III	TCNNGA	5 cut(s)	630, 851, 1190, 1216, 1325
Hpy8I	GTNNAC	1 cut(s)	1018
HpyAV	CCTTC	5 cut(s)	162, 515, 713, 922, 1162
HpyCH4III	ACNGT	3 cut(s)	811, 973, 1015
HpyCH4IV	ACGT	1 cut(s)	775
HpyF10VI	GCNNNNNNNGC	7 cut(s)	332, 431, 623, 1072, 1256, 1265, 1315
HpyF3I	CTNAG	5 cut(s)	67, 97, 138, 537, 798
HpySE526I	ACGT	1 cut(s)	775
HspAI	GCGC	1 cut(s)	919
Kpn2I	TCCGGA	1 cut(s)	1215
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
LmnI	GCTCC	3 cut(s)	376, 533, 557
Lsp1109I	GCAGC	4 cut(s)	436, 710, 934, 1234
LweI	GCATC	6 cut(s)	171, 334, 412, 541, 950, 1219
MabI	ACCWGGT	1 cut(s)	634
MaeI	CTAG	2 cut(s)	194, 630
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	5 cut(s)	114, 277, 571, 805, 859
MalI	GATC	6 cut(s)	227, 458, 723, 786, 1108, 1220
MboI	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
MboII	GAAGA	4 cut(s)	184, 998, 1141, 1144
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	2 cut(s)	456, 1106
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	5 cut(s)	206, 236, 492, 976, 1028
MlyI	GAGTC	2 cut(s)	788, 1089
MmeI	TCCRAC	1 cut(s)	793
Mph1103I	ATGCAT	1 cut(s)	408
MroI	TCCGGA	1 cut(s)	1215
MseI	TTAA	3 cut(s)	35, 462, 1100
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	2 cut(s)	555, 1216
MspR9I	CCNGG	3 cut(s)	396, 636, 1143
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	836
MvaI	CCWGG	3 cut(s)	396, 636, 1143
MwoI	GCNNNNNNNGC	7 cut(s)	332, 431, 623, 1072, 1256, 1265, 1315
NdeI	CATATG	1 cut(s)	1240
NdeII	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
NlaIV	GGNNCC	4 cut(s)	295, 640, 1108, 1302
NmuCI	GTSAC	1 cut(s)	805
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	1 cut(s)	596
PasI	CCCWGGG	1 cut(s)	395
PctI	GAATGC	1 cut(s)	836
PfeI	GAWTC	3 cut(s)	71, 854, 1146
PflFI	GACNNNGTC	1 cut(s)	636
PkrI	GCNGC	4 cut(s)	451, 700, 949, 1249
PleI	GAGTC	2 cut(s)	788, 1088
PmaCI	CACGTG	1 cut(s)	776
PmlI	CACGTG	1 cut(s)	776
PpsI	GAGTC	2 cut(s)	788, 1088
Ppu21I	YACGTR	1 cut(s)	776
PshBI	ATTAAT	1 cut(s)	1100
PsiI	TTATAA	1 cut(s)	935
Psp6I	CCWGG	3 cut(s)	394, 634, 1141
PspCI	CACGTG	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	650
PspGI	CCWGG	3 cut(s)	394, 634, 1141
PspN4I	GGNNCC	4 cut(s)	295, 640, 1108, 1302
PspPI	GGNCC	2 cut(s)	50, 638
PstNI	CAGNNNCTG	2 cut(s)	281, 857
PsuI	RGATCY	2 cut(s)	456, 1106
PsyI	GACNNNGTC	1 cut(s)	636
RsaI	GTAC	3 cut(s)	30, 266, 954
RsaNI	GTAC	3 cut(s)	29, 265, 953
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	35, 462, 1100
SatI	GCNGC	4 cut(s)	450, 699, 948, 1248
Sau3AI	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
Sau96I	GGNCC	2 cut(s)	50, 638
SchI	GAGTC	2 cut(s)	788, 1089
ScrFI	CCNGG	3 cut(s)	396, 636, 1143
SduI	GDGCHC	1 cut(s)	381
SexAI	ACCWGGT	1 cut(s)	634
SfaNI	GCATC	6 cut(s)	171, 334, 412, 541, 950, 1219
SinI	GGWCC	2 cut(s)	50, 638
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	5 cut(s)	206, 236, 492, 976, 1028
SsiI	CCGC	2 cut(s)	681, 716
SspMI	CTAG	2 cut(s)	194, 630
StyD4I	CCNGG	3 cut(s)	394, 634, 1141
TaaI	ACNGT	3 cut(s)	811, 973, 1015
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	1 cut(s)	792
TasI	AATT	5 cut(s)	206, 236, 492, 976, 1028
TatI	WGTACW	2 cut(s)	28, 952
TfiI	GAWTC	3 cut(s)	71, 854, 1146
Tru1I	TTAA	3 cut(s)	35, 462, 1100
Tru9I	TTAA	3 cut(s)	35, 462, 1100
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	4 cut(s)	449, 698, 947, 1247
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	3 cut(s)	195, 1181, 1244
TspGWI	ACGGA	1 cut(s)	869
Tth111I	GACNNNGTC	1 cut(s)	636
VpaK11BI	GGWCC	2 cut(s)	50, 638
VspI	ATTAAT	1 cut(s)	1100
XapI	RAATTY	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	629
XceI	RCATGY	1 cut(s)	596
XspI	CTAG	2 cut(s)	194, 630
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.