Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005263

Physical Location & Seq

Genomic Coordinates Forward (+)

3782637 .. 3786412

Gene Structure 3776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G053700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAGTTCTACATGCAAGTCGCTTTGATTATAGTCCTTTTTGTGTTTGGTCCAACAACTATATTCTCAAGTTCCTCTGTGAGCTCAAATGGGCTCTCAGAAATCCCCTTCAAGTTACTTGATTTTGCCCAGAAACCTCAAGTGTTTGATTGGATGGTGGGAATCAGAAGGAAAATACATGAAAACCCAGAATTGGGTTATGAGGAATTTGAAACCAGTGAGCTGGTCAGAGCAGAATTGGATAAACTGGGTATTGACTATAAATACCCAATTGCGGTTACAGGTGTTGTAGGGTTCATTGGTACCAGAAAACCGCCTTTTGTTGCAATAAGAGCTGATATGGATGCTCTGGCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTTCCTGGGAAAATGCACGCTTGTGGGCATGATGCTCATGTCGCAATGCTTCTTGGTGCGGCAAAGATCCTTAAAGAACATGAGCAAGATTTACAGGGAACAGTTGTTCTTCTATTTCAACCAGCAGAGGAAGGAGGAGCAGGGGCTAAGAAAATGATAGATGGCGGAGCATTAGAGAATGTTAATGCTATTTTTGGGTTGCATGTTGCAAACCACGTACCTATAGCTGAAGTGGCCTCCAGACCTGGTCCTTTTTTTGCAGGAAGTGGCTTCTTTGAAGCCACAATAAGTGGAAAAGGCGGTCATGCAGCCATTCCTCAGCATGCGATTGACCCGATACTGGCAGCTTCAAATGTGATTGTCAGCTTGCAACATCTTGTTTCACGTGAAGCTGATCCACTGGACTCACAGGTAGTCACGGTTGGAAAATTTCAAGGAGGTGATGCATTCAATGTTATTCCAGATTCTGTCAGAATTGGTGGCACTTTCCGTGCCTTTACACGGGAGAGCTTAATGCAACTCCAGCAGCGCATTAAGGAGGTCATAATGGGACAAGCTTCTGTACAAAGGTGCAGTGCAACTGTCAATTTCCTTGAAGATGAGAAACCTTTGTCCCCCCCGACCATAAACCATAAGGACCTGCAAGAACACTTCCAGAATGTAGCTGGAGATATGCTTGGTATCCACAGAGTCAAAGACCATCAACCATTGATGGGATCTGAGGATTTTGCATATTACCAAGAGGCAATACCTGGATATTTTTTCTTGCTTGGAATGGCAGATGACAAACTTGGACCTCTGCATATGCCACATTCACCTCACTTCCAAATCAATGAAGATGCACTTCCTTTTGGTGCTGCACTTCACGCTTCTTTGGCTATTAGGTATTTGCTTGAACTCCAACAGGAAGTTCCTTTGCCAGCACAAGAATACCATGATGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0010112 GO:0010178 GO:0010179 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0071944 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

446

Amino Acids

48.88

Weight (kDa)

5.34

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51760 AT1G51780
fragaria_vesca	FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830 FvH4_6g32830
malus_domestica	MD09G1197800.v1.1 MD17G1178700.v1.1
prunus_persica	Prupe.3G053700_v2.0.a1
pyrus_communis	pycom17g18780
rosa_chinensis	RchiOBHm_Chr2g0142041
rosa_laevigata	RLG00000019947
rosa_multiflora	Rmu_sc0004757.1_g000007
rosa_roxburghii	Rroxscaffold_2G00103650
rosa_rugosa	Rorug02G0369800 Rorug02G0369900 Rorug02G0370000
rosa_samantha	Rh2AG422500 Rh2BG432700 Rh2CG409400 Rh2DG442400
rosa_wichuraiana	Rw2G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1336
Acc36I	ACCTGC	1 cut(s)	1038
Acc65I	GGTACC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	302
AciI	CCGC	5 cut(s)	275, 314, 449, 555, 690
AclWI	GGATC	3 cut(s)	451, 779, 1114
AcsI	RAATTY	2 cut(s)	206, 818
AcuI	CTGAAG	1 cut(s)	639
AcvI	CACGTG	1 cut(s)	776
AfaI	GTAC	3 cut(s)	304, 609, 954
AfiI	CCNNNNNNNGG	6 cut(s)	193, 194, 274, 730, 891, 1103
AgsI	TTSAA	9 cut(s)	112, 212, 509, 668, 741, 824, 841, 986, 1286
AjnI	CCWGG	3 cut(s)	394, 634, 1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	1284, 1316
AleI	CACNNNNGTG	1 cut(s)	411
AloI	GAACNNNNNNTCC	2 cut(s)	480, 512
Alw21I	GWGCWC	2 cut(s)	86, 381
AlwI	GGATC	3 cut(s)	451, 779, 1114
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	4 cut(s)	698, 734, 916, 1247
ApoI	RAATTY	2 cut(s)	206, 818
Asp718I	GGTACC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	921
AspS9I	GGNCC	4 cut(s)	50, 638, 1027, 1184
AsuHPI	GGTGA	2 cut(s)	842, 1197
AvaII	GGWCC	4 cut(s)	50, 638, 1027, 1184
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	2 cut(s)	86, 96
BbrPI	CACGTG	1 cut(s)	776
Bbv12I	GWGCWC	2 cut(s)	86, 381
BbvCI	CCTCAGC	1 cut(s)	708
BbvI	GCAGC	4 cut(s)	710, 746, 928, 1234
BccI	CCATC	4 cut(s)	148, 545, 1096, 1098
BciT130I	CCWGG	3 cut(s)	396, 636, 1143
BciVI	GTATCC	1 cut(s)	1082
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	1038
BfuI	GTATCC	1 cut(s)	1082
BisI	GCNGC	5 cut(s)	450, 699, 735, 917, 1248
BlsI	GCNGC	5 cut(s)	451, 700, 736, 918, 1249
Bme1390I	CCNGG	3 cut(s)	396, 636, 1143
Bme18I	GGWCC	4 cut(s)	50, 638, 1027, 1184
BmgT120I	GGNCC	4 cut(s)	50, 638, 1027, 1184
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	3 cut(s)	396, 636, 1143
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	4 cut(s)	334, 412, 823, 1219
BmuI	ACTGGG	1 cut(s)	257
BpmI	CTGGAG	3 cut(s)	613, 896, 1077
Bpu10I	CCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	2 cut(s)	52, 123
BsaAI	YACGTR	2 cut(s)	607, 776
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	6 cut(s)	193, 194, 274, 730, 891, 1103
Bse1I	ACTGG	4 cut(s)	216, 252, 735, 795
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	3 cut(s)	396, 636, 1143
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	2 cut(s)	159, 349
BseLI	CCNNNNNNNGG	6 cut(s)	193, 194, 274, 730, 891, 1103
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	3 cut(s)	111, 722, 1101
BseNI	ACTGG	4 cut(s)	216, 252, 735, 795
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	4 cut(s)	710, 746, 928, 1234
BsgI	GTGCAG	2 cut(s)	982, 1233
BshFI	GGCC	1 cut(s)	626
BshNI	GGYRCC	1 cut(s)	302
BsiHKAI	GWGCWC	2 cut(s)	86, 381
BslFI	GGGAC	2 cut(s)	954, 988
BslI	CCNNNNNNNGG	6 cut(s)	193, 194, 274, 730, 891, 1103
BsmFI	GGGAC	2 cut(s)	954, 988
BsmI	GAATGC	1 cut(s)	836
BsnI	GGCC	1 cut(s)	626
Bsp1286I	GDGCHC	3 cut(s)	86, 96, 381
Bsp1407I	TGTACA	1 cut(s)	952
Bsp143I	GATC	3 cut(s)	456, 784, 1106
BspACI	CCGC	5 cut(s)	275, 314, 449, 555, 690
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	3 cut(s)	110, 721, 1102
BspLI	GGNNCC	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	1038
BspPI	GGATC	3 cut(s)	451, 779, 1114
BspT107I	GGYRCC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	441
BsrGI	TGTACA	1 cut(s)	952
BsrI	ACTGG	4 cut(s)	216, 252, 735, 795
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	3 cut(s)	456, 784, 1106
Bst2UI	CCWGG	3 cut(s)	396, 636, 1143
Bst4CI	ACNGT	3 cut(s)	493, 811, 973
BstAUI	TGTACA	1 cut(s)	952
BstBAI	YACGTR	2 cut(s)	607, 776
BstC8I	GCNNGC	4 cut(s)	408, 714, 758, 1311
BstDEI	CTNAG	4 cut(s)	97, 537, 708, 1110
BstF5I	GGATG	2 cut(s)	159, 349
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	3 cut(s)	459, 787, 1109
BstMBI	GATC	3 cut(s)	456, 784, 1106
BstMWI	GCNNNNNNNGC	6 cut(s)	332, 431, 623, 913, 1256, 1265
BstNI	CCWGG	3 cut(s)	396, 636, 1143
BstNSI	RCATGY	3 cut(s)	16, 596, 716
BstSCI	CCNGG	3 cut(s)	394, 634, 1141
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	710, 746, 928, 1234
BstX2I	RGATCY	2 cut(s)	456, 1106
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	2 cut(s)	456, 1106
BsuI	GTATCC	1 cut(s)	1082
BsuRI	GGCC	1 cut(s)	626
BtsCI	GGATG	2 cut(s)	159, 349
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	3 cut(s)	223, 788, 970
BveI	ACCTGC	1 cut(s)	1038
Cac8I	GCNNGC	4 cut(s)	408, 714, 758, 1311
CaiI	CAGNNNCTG	1 cut(s)	857
CfoI	GCGC	1 cut(s)	921
Cfr13I	GGNCC	4 cut(s)	50, 638, 1027, 1184
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	3 cut(s)	303, 608, 953
CviAII	CATG	9 cut(s)	13, 179, 419, 428, 470, 593, 695, 713, 1325
CviQI	GTAC	3 cut(s)	303, 608, 953
DdeI	CTNAG	4 cut(s)	97, 537, 708, 1110
DpnI	GATC	3 cut(s)	458, 786, 1108
DpnII	GATC	3 cut(s)	456, 784, 1106
EciI	GGCGGA	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	86, 96
Eco47I	GGWCC	4 cut(s)	50, 638, 1027, 1184
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	639
Eco72I	CACGTG	1 cut(s)	776
EcoICRI	GAGCTC	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	1027
EcoRII	CCWGG	3 cut(s)	394, 634, 1141
EcoT22I	ATGCAT	1 cut(s)	838
EcoT38I	GRGCYC	2 cut(s)	86, 96
FaeI	CATG	9 cut(s)	16, 182, 422, 431, 473, 596, 698, 716, 1328
FalI	AAGNNNNNCTT	2 cut(s)	1218, 1250
FaqI	GGGAC	2 cut(s)	954, 988
FatI	CATG	9 cut(s)	12, 178, 418, 427, 469, 592, 694, 712, 1324
FauNDI	CATATG	1 cut(s)	1194
Fnu4HI	GCNGC	5 cut(s)	450, 699, 735, 917, 1248
FokI	GGATG	2 cut(s)	166, 356
FriOI	GRGCYC	2 cut(s)	86, 96
Fsp4HI	GCNGC	5 cut(s)	450, 699, 735, 917, 1248
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	5 cut(s)	450, 699, 735, 917, 1248
GsuI	CTGGAG	3 cut(s)	613, 896, 1077
HaeIII	GGCC	1 cut(s)	626
HhaI	GCGC	1 cut(s)	921
Hin1II	CATG	9 cut(s)	16, 182, 422, 431, 473, 596, 698, 716, 1328
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HindIII	AAGCTT	1 cut(s)	945
HinfI	GANTC	4 cut(s)	162, 794, 854, 1080
HphI	GGTGA	2 cut(s)	842, 1197
Hpy188I	TCNGA	5 cut(s)	100, 167, 230, 863, 1111
Hpy188III	TCNNGA	3 cut(s)	630, 851, 1045
HpyAV	CCTTC	3 cut(s)	118, 162, 515
HpyCH4III	ACNGT	3 cut(s)	493, 811, 973
HpyCH4IV	ACGT	2 cut(s)	606, 775
HpyF10VI	GCNNNNNNNGC	6 cut(s)	332, 431, 623, 913, 1256, 1265
HpyF3I	CTNAG	4 cut(s)	97, 537, 708, 1110
HpySE526I	ACGT	2 cut(s)	606, 775
Hsp92II	CATG	9 cut(s)	16, 182, 422, 431, 473, 596, 698, 716, 1328
HspAI	GCGC	1 cut(s)	919
KpnI	GGTACC	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	456, 784, 1106
LmnI	GCTCC	3 cut(s)	376, 527, 557
Lsp1109I	GCAGC	4 cut(s)	710, 746, 928, 1234
LweI	GCATC	4 cut(s)	334, 412, 823, 1219
MabI	ACCWGGT	1 cut(s)	634
MaeII	ACGT	2 cut(s)	606, 775
MaeIII	GTNAC	3 cut(s)	114, 277, 805
MalI	GATC	3 cut(s)	458, 786, 1108
MboI	GATC	3 cut(s)	456, 784, 1106
MboII	GAAGA	3 cut(s)	491, 998, 1238
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	2 cut(s)	456, 1106
MhlI	GDGCHC	3 cut(s)	86, 96, 381
MluCI	AATT	8 cut(s)	191, 206, 236, 270, 818, 864, 976, 1331
MlyI	GAGTC	2 cut(s)	788, 1089
MmeI	TCCRAC	3 cut(s)	77, 793, 1315
Mph1103I	ATGCAT	1 cut(s)	838
MseI	TTAA	4 cut(s)	462, 573, 902, 924
MslI	CAYNNNNRTG	1 cut(s)	411
MspR9I	CCNGG	3 cut(s)	396, 636, 1143
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	836
MvaI	CCWGG	3 cut(s)	396, 636, 1143
MwoI	GCNNNNNNNGC	6 cut(s)	332, 431, 623, 913, 1256, 1265
NdeI	CATATG	1 cut(s)	1194
NdeII	GATC	3 cut(s)	456, 784, 1106
NlaIII	CATG	9 cut(s)	16, 182, 422, 431, 473, 596, 698, 716, 1328
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	805
NsiI	ATGCAT	1 cut(s)	838
NspI	RCATGY	3 cut(s)	16, 596, 716
OliI	CACNNNNGTG	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	716
PctI	GAATGC	1 cut(s)	836
PfeI	GAWTC	2 cut(s)	162, 854
PflFI	GACNNNGTC	1 cut(s)	636
PkrI	GCNGC	5 cut(s)	451, 700, 736, 918, 1249
PleI	GAGTC	2 cut(s)	788, 1088
PmaCI	CACGTG	1 cut(s)	776
PmlI	CACGTG	1 cut(s)	776
PpsI	GAGTC	2 cut(s)	788, 1088
Ppu21I	YACGTR	2 cut(s)	607, 776
PpuMI	RGGWCCY	1 cut(s)	1027
PsiI	TTATAA	1 cut(s)	1336
Psp124BI	GAGCTC	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	1027
Psp6I	CCWGG	3 cut(s)	394, 634, 1141
PspCI	CACGTG	1 cut(s)	776
PspGI	CCWGG	3 cut(s)	394, 634, 1141
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	4 cut(s)	50, 638, 1027, 1184
PspPPI	RGGWCCY	1 cut(s)	1027
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	2 cut(s)	456, 1106
PsyI	GACNNNGTC	1 cut(s)	636
RsaI	GTAC	3 cut(s)	304, 609, 954
RsaNI	GTAC	3 cut(s)	303, 608, 953
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	4 cut(s)	462, 573, 902, 924
SatI	GCNGC	5 cut(s)	450, 699, 735, 917, 1248
Sau3AI	GATC	3 cut(s)	456, 784, 1106
Sau96I	GGNCC	4 cut(s)	50, 638, 1027, 1184
SchI	GAGTC	2 cut(s)	788, 1089
ScrFI	CCNGG	3 cut(s)	396, 636, 1143
SduI	GDGCHC	3 cut(s)	86, 96, 381
SexAI	ACCWGGT	1 cut(s)	634
SfaNI	GCATC	4 cut(s)	334, 412, 823, 1219
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	4 cut(s)	50, 638, 1027, 1184
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	67, 138
SmoI	CTYRAG	2 cut(s)	67, 138
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	8 cut(s)	191, 206, 236, 270, 818, 864, 976, 1331
SsiI	CCGC	5 cut(s)	275, 314, 449, 555, 690
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	3 cut(s)	394, 634, 1141
TaaI	ACNGT	3 cut(s)	493, 811, 973
TaiI	ACGT	2 cut(s)	609, 778
TasI	AATT	8 cut(s)	191, 206, 236, 270, 818, 864, 976, 1331
TatI	WGTACW	1 cut(s)	952
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	162, 854
Tru1I	TTAA	4 cut(s)	462, 573, 902, 924
Tru9I	TTAA	4 cut(s)	462, 573, 902, 924
TscAI	CASTG	3 cut(s)	223, 795, 970
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	4 cut(s)	698, 734, 916, 1247
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	3 cut(s)	195, 286, 1239
TspGWI	ACGGA	1 cut(s)	869
TspRI	CASTG	3 cut(s)	223, 795, 970
Tth111I	GACNNNGTC	1 cut(s)	636
VpaK11BI	GGWCC	4 cut(s)	50, 638, 1027, 1184
XapI	RAATTY	2 cut(s)	206, 818
XceI	RCATGY	3 cut(s)	16, 596, 716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1052
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.