AT1G52380

Ran-binding protein 1 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007109
Physical Location & Seq
Forward (+)
19508938 .. 19511641
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52380.4

Sequence Viewer

Length: 1323 bp
ATGGGTGACTCGGAAAACGTTCAGCAACCTTCAAAAAAGAGAGGTGCCTTGAAGCAGCTGTCTCGTGATAATCCAGGTCTTGATGATGATGATGATTCAGCTGAACTTGAGAGTGGAACTTTCAAGAAGGCCAGTGATGAGGTTTTGGCTAGTAGAAGAATTGTCAGAGTTAAGCGCAAAGAGCCATCTGCTGCTCCAGTTGCAGCATCCAATCCATTTGCTGGAATTCAGTTGGTCCCTACGACTGCACCTGCTTCAACCCCTGTGGGAACAAATGCACCTCTGGCTGAGTCAAAATTGGCTCCAGCTGAAGCAGTAGTTGAGGACAATCAAAAAGCAAGTGATATTGAGGAGGGCGATGAAGTTGACAGTAAGAAGGTTGATGTCAAAGATGCTGTTGGGGAAGAGACTGAAAAGACTAAAGATAAGGATGATAATCATTGTGGAAAGAGTGCTGATGTCCAAGTTGCGGCTACAGAAGTAGCTCAGATGGTCTCATGTGACACAAACGTTTGCAACAACGCTGTTGAAGGAACAGACCAAACTGATTTTCCTCTTGAGAAGGATTCAGGAGGTGATCAGGCTGAGAAAAAAGAAAAAGAAGGCAACGGAATTGAGGAAGCAGATAAGAATGGCGATAATGGTGCTTTCAGCTCATTCCAACAGCATTCAAGTAACAAAAACGCATTCACCGGACTTGCCAGTACAGAGGCTTCAGGGTCTTCGTTCTCATTTGGTTTGGTTTCTCAGGATGGTTCAACTGGTACTGGGTCTCTCTTTGGCTTTGGCCTTCCAAGCAGCAATAGCTCTTCTATATTCGGTGCAACTGGATCGTCCATTATCAAGAAGAGTGAAGGTAGTGGGTTTCCGCCAAAGCAAGAGGTTTCCACAGAAACAGGTGAAGAGAATGAGAAAGTTGCCTTCTCAGCTGACTCGATCATGTTCGAATATCTTGATGGAGGATGGAAAGAGCGTGGAAAAGGAGAACTCAAGGTAAACGTCTCCAGTAATGATGGTAAAGCAAGATTAGTTATGAGAGCTAAAGGAAACTACAGATTGATCTTAAACGCGAGTCTTTACCCAGAGATGAAACTTGCAAACATGGATAAAAAGGGAATCACATTCGCTTGTGTGAATAGTGTAAGCGAAGGCAAAGAAGGTCTCTCTACATTTGCACTGAAGTTCAAAGACCCGACAATTGTTGAAGAGTTTCGTGTAGCCATTGACAAACACAAAGATAGTAAACCAATGGAGAAAGCAGCAGAAAAATCAGCTCTTCCTCTGAAGACACCTGAGAACTCTCCAACAGCTACAGATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000054 GO:0000056 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0022613 GO:0030163 GO:0031267 GO:0031323 GO:0031326 GO:0031503 GO:0031935 GO:0031938 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051603 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060255 GO:0060968 GO:0065007 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1903047 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05166 map05166
Pfam Domains
Protein Families
NUP50 Ran_BP1

Protein Analysis

440

Amino Acids

46.59

Weight (kDa)

4.81

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUP50 PF08911 12 - 77 4.5e-18 NUP50 (Nucleoporin 50 kDa)
Ran_BP1 PF00638 298 - 412 1.1e-17 RanBP1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 221
AccII CGCG 1 cut(s) 1070
AciI CCGC 2 cut(s) 470, 869
AclI AACGTT 2 cut(s) 18, 510
AclWI GGATC 1 cut(s) 838
AcsI RAATTY 1 cut(s) 225
AcuI CTGAAG 4 cut(s) 330, 699, 1199, 1304
AfaI GTAC 2 cut(s) 706, 766
AfiI CCNNNNNNNGG 2 cut(s) 221, 469
AgsI TTSAA 9 cut(s) 33, 52, 124, 258, 530, 672, 759, 1186, 1205
AjnI CCWGG 1 cut(s) 73
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
Alw26I GTCTC 6 cut(s) 66, 401, 499, 777, 1006, 1166
AlwI GGATC 1 cut(s) 838
AoxI GGCC 2 cut(s) 129, 787
ApeKI GCWGC 5 cut(s) 55, 191, 203, 798, 1259
ApoI RAATTY 1 cut(s) 225
Asp700I GAANNNNTTC 2 cut(s) 18, 1209
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 4 cut(s) 17, 587, 682, 911
AsuII TTCGAA 1 cut(s) 945
AvaII GGWCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 44
BarI GAAGNNNNNNTAC 2 cut(s) 697, 729
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 2 cut(s) 714, 1292
BbvI GCAGC 5 cut(s) 67, 178, 215, 810, 1271
BccI CCATC 6 cut(s) 193, 484, 746, 950, 957, 1007
BcgI CGANNNNNNTGC 6 cut(s) 44, 78, 626, 660, 813, 847
BciT130I CCWGG 1 cut(s) 75
BclI TGATCA 1 cut(s) 577
BcoDI GTCTC 6 cut(s) 66, 401, 499, 777, 1006, 1166
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 3 cut(s) 474, 1051, 1311
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 6 cut(s) 56, 192, 204, 471, 799, 1260
BlsI GCNGC 6 cut(s) 57, 193, 205, 472, 800, 1261
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 3 cut(s) 46, 237, 303
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 2 cut(s) 215, 382
BmuI ACTGGG 1 cut(s) 777
BpiI GAAGAC 2 cut(s) 714, 1292
BpmI CTGGAG 3 cut(s) 180, 288, 988
Bpu14I TTCGAA 1 cut(s) 945
BpuEI CTTGAG 3 cut(s) 128, 578, 974
BsaBI GATNNNNATC 1 cut(s) 435
BsaI GGTCTC 3 cut(s) 499, 777, 1166
BsaWI WCCGGW 1 cut(s) 692
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 469
Bse1I ACTGG 7 cut(s) 132, 197, 702, 766, 772, 832, 1005
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 1 cut(s) 75
BseGI GGATG 4 cut(s) 206, 436, 757, 968
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 221, 469
BseMII CTCAG 6 cut(s) 279, 500, 576, 761, 939, 1284
BseNI ACTGG 7 cut(s) 132, 197, 702, 766, 772, 832, 1005
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 5 cut(s) 67, 178, 215, 810, 1271
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 1070
BshFI GGCC 2 cut(s) 131, 789
BshNI GGYRCC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 693
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 221, 469
BsmAI GTCTC 6 cut(s) 66, 401, 499, 777, 1006, 1166
BsmBI CGTCTC 1 cut(s) 1006
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 2 cut(s) 667, 686
BsnI GGCC 2 cut(s) 131, 789
Bso31I GGTCTC 3 cut(s) 499, 777, 1166
Bsp119I TTCGAA 1 cut(s) 945
Bsp143I GATC 4 cut(s) 577, 830, 936, 1059
BspACI CCGC 2 cut(s) 470, 869
BspANI GGCC 2 cut(s) 131, 789
BspCNI CTCAG 6 cut(s) 280, 499, 577, 760, 938, 1285
BspFNI CGCG 1 cut(s) 1070
BspLI GGNNCC 3 cut(s) 46, 237, 303
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 1 cut(s) 838
BspQI GCTCTTC 2 cut(s) 814, 1281
BspT104I TTCGAA 1 cut(s) 945
BspT107I GGYRCC 1 cut(s) 44
BspTNI GGTCTC 3 cut(s) 499, 777, 1166
BsrI ACTGG 7 cut(s) 132, 197, 702, 766, 772, 832, 1005
BssMI GATC 4 cut(s) 577, 830, 936, 1059
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 6 cut(s) 399, 814, 842, 897, 1200, 1281
BstBI TTCGAA 1 cut(s) 945
BstDEI CTNAG 6 cut(s) 288, 486, 585, 747, 925, 1293
BstF5I GGATG 4 cut(s) 206, 436, 757, 968
BstFNI CGCG 1 cut(s) 1070
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 4 cut(s) 580, 833, 939, 1062
BstMAI GTCTC 6 cut(s) 66, 401, 499, 777, 1006, 1166
BstMBI GATC 4 cut(s) 577, 830, 936, 1059
BstMWI GCNNNNNNNGC 6 cut(s) 181, 200, 284, 795, 804, 926
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 3 cut(s) 474, 1051, 1311
BstUI CGCG 1 cut(s) 1070
BstV1I GCAGC 5 cut(s) 67, 178, 215, 810, 1271
BstV2I GAAGAC 2 cut(s) 714, 1292
BsuRI GGCC 2 cut(s) 131, 789
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 4 cut(s) 206, 436, 757, 968
BtsIMutI CAGTG 2 cut(s) 139, 1175
BveI ACCTGC 1 cut(s) 259
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 2 cut(s) 705, 765
CspCI CAANNNNNGTGG 2 cut(s) 246, 281
CviAII CATG 3 cut(s) 498, 940, 1102
CviQI GTAC 2 cut(s) 705, 765
DdeI CTNAG 6 cut(s) 288, 486, 585, 747, 925, 1293
DpnI GATC 4 cut(s) 579, 832, 938, 1061
DpnII GATC 4 cut(s) 577, 830, 936, 1059
Eam1104I CTCTTC 6 cut(s) 399, 814, 842, 897, 1200, 1281
EarI CTCTTC 6 cut(s) 399, 814, 842, 897, 1200, 1281
EciI GGCGGA 1 cut(s) 858
Eco31I GGTCTC 3 cut(s) 499, 777, 1166
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 4 cut(s) 330, 699, 1199, 1304
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 1006
FaeI CATG 3 cut(s) 501, 943, 1105
FaiI YATR 5 cut(s) 499, 815, 941, 1034, 1103
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 497, 939, 1101
FbaI TGATCA 1 cut(s) 577
Fnu4HI GCNGC 6 cut(s) 56, 192, 204, 471, 799, 1260
FokI GGATG 4 cut(s) 193, 443, 764, 975
Fsp4HI GCNGC 6 cut(s) 56, 192, 204, 471, 799, 1260
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 176
GluI GCNGC 6 cut(s) 56, 192, 204, 471, 799, 1260
GsuI CTGGAG 3 cut(s) 180, 288, 988
HaeIII GGCC 2 cut(s) 131, 789
HapII CCGG 1 cut(s) 693
HhaI GCGC 1 cut(s) 177
Hin1II CATG 3 cut(s) 501, 943, 1105
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 7 cut(s) 8, 95, 290, 566, 932, 1072, 1116
HpaII CCGG 1 cut(s) 693
HphI GGTGA 4 cut(s) 17, 587, 682, 911
Hpy166II GTNNAC 3 cut(s) 367, 997, 1244
Hpy188I TCNGA 4 cut(s) 13, 167, 489, 1284
Hpy188III TCNNGA 8 cut(s) 65, 80, 124, 557, 570, 749, 844, 953
Hpy8I GTNNAC 3 cut(s) 367, 997, 1244
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 3 cut(s) 18, 510, 999
HpyCH4V TGCA 7 cut(s) 203, 248, 278, 516, 824, 1097, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 181, 200, 284, 795, 804, 926
HpyF3I CTNAG 6 cut(s) 288, 486, 585, 747, 925, 1293
HpySE526I ACGT 3 cut(s) 18, 510, 999
Hsp92II CATG 3 cut(s) 501, 943, 1105
HspAI GCGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 4 cut(s) 577, 830, 936, 1059
LguI GCTCTTC 2 cut(s) 814, 1281
LmnI GCTCC 2 cut(s) 199, 307
Lsp1109I GCAGC 5 cut(s) 67, 178, 215, 810, 1271
LweI GCATC 2 cut(s) 215, 382
MaeI CTAG 1 cut(s) 150
MaeII ACGT 3 cut(s) 18, 510, 999
MaeIII GTNAC 3 cut(s) 5, 500, 674
MalI GATC 4 cut(s) 579, 832, 938, 1061
MboI GATC 4 cut(s) 577, 830, 936, 1059
MboII GAAGA 9 cut(s) 168, 416, 714, 801, 859, 914, 1217, 1268, 1297
MfeI CAATTG 1 cut(s) 1197
MluCI AATT 5 cut(s) 159, 225, 296, 612, 1197
MlyI GAGTC 4 cut(s) 2, 299, 926, 1081
MmeI TCCRAC 1 cut(s) 685
MroXI GAANNNNTTC 2 cut(s) 18, 1209
MseI TTAA 2 cut(s) 171, 1064
MspA1I CMGCKG 4 cut(s) 58, 101, 308, 929
MspI CCGG 1 cut(s) 693
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 1197
Mva1269I GAATGC 2 cut(s) 667, 686
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 1070
MwoI GCNNNNNNNGC 6 cut(s) 181, 200, 284, 795, 804, 926
NdeII GATC 4 cut(s) 577, 830, 936, 1059
NlaIII CATG 3 cut(s) 501, 943, 1105
NlaIV GGNNCC 3 cut(s) 46, 237, 303
NmuCI GTSAC 2 cut(s) 5, 500
NspV TTCGAA 1 cut(s) 945
PaqCI CACCTGC 1 cut(s) 259
PciSI GCTCTTC 2 cut(s) 814, 1281
PctI GAATGC 2 cut(s) 667, 686
PdmI GAANNNNTTC 2 cut(s) 18, 1209
PfeI GAWTC 3 cut(s) 95, 566, 1116
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 6 cut(s) 57, 193, 205, 472, 800, 1261
PleI GAGTC 4 cut(s) 2, 298, 926, 1080
PpsI GAGTC 4 cut(s) 2, 298, 926, 1080
Psp1406I AACGTT 2 cut(s) 18, 510
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 46, 237, 303
PspPI GGNCC 1 cut(s) 235
PvuII CAGCTG 4 cut(s) 58, 101, 308, 929
RsaI GTAC 2 cut(s) 706, 766
RsaNI GTAC 2 cut(s) 705, 765
SapI GCTCTTC 2 cut(s) 814, 1281
SaqAI TTAA 2 cut(s) 171, 1064
SatI GCNGC 6 cut(s) 56, 192, 204, 471, 799, 1260
Sau3AI GATC 4 cut(s) 577, 830, 936, 1059
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 4 cut(s) 2, 299, 926, 1081
ScrFI CCNGG 1 cut(s) 75
SfaNI GCATC 2 cut(s) 215, 382
SfcI CTRYAG 3 cut(s) 474, 1051, 1311
SfuI TTCGAA 1 cut(s) 945
SinI GGWCC 1 cut(s) 235
SmlI CTYRAG 3 cut(s) 107, 557, 989
SmoI CTYRAG 3 cut(s) 107, 557, 989
Sse9I AATT 5 cut(s) 159, 225, 296, 612, 1197
SsiI CCGC 2 cut(s) 470, 869
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 3 cut(s) 21, 513, 1002
TaqI TCGA 2 cut(s) 935, 945
TasI AATT 5 cut(s) 159, 225, 296, 612, 1197
TatI WGTACW 1 cut(s) 704
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 3 cut(s) 95, 566, 1116
Tru1I TTAA 2 cut(s) 171, 1064
Tru9I TTAA 2 cut(s) 171, 1064
TscAI CASTG 2 cut(s) 139, 1182
TseFI GTSAC 2 cut(s) 5, 500
TseI GCWGC 5 cut(s) 55, 191, 203, 798, 1259
Tsp45I GTSAC 2 cut(s) 5, 500
TspDTI ATGAA 2 cut(s) 375, 1103
TspGWI ACGGA 1 cut(s) 624
TspRI CASTG 2 cut(s) 139, 1182
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 1 cut(s) 225
XmnI GAANNNNTTC 2 cut(s) 18, 1209
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.