AT3G15970

Ran-binding protein 1 domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
5408792 .. 5411153
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15970.1

Sequence Viewer

Length: 1398 bp
ATGGGGGACTCCGATAATGCTATACCATTTTCCAGAAAGAGAACTGCTCTGAAAGAGCTGTCTCGTGACAATCCTGGTCTTGATGATGATGATGAAGACACTTCTGCACTCGAGAGTGGTACCTTCAACACTGCTAGTAAGGAGGTGTTGGCAAGCAGAAGAATTATCAGAGTTAGGCGCACAGATCGATCTGCTACTGCACCACCAGCTTCTAATCCATTTACTGGAATTCGTTTGGTTCCTTTTACTGCTCCTGCTCCTTCTACTGCTGCTGCAGAAACGACTAAACCTCTGTCTGCGGGAAAACAAGAGACACTGGCTGATGGAAGGTCTGATGCTACCAAGGAAACTGATGGTGACAGTAAAGAAAAGAGTGACGCAATTGATGCTGTAGGAAAACAAGAGACACAGGGTGATGAAATATCTGCTAAGACCAAGGATATTATTGATGGTGGAGAGAAAGAGATGAGTGAGGCAGTTAATTCCGTAGAGGGTGGTGGAGCTGTAAACAAGAATGAAGACGAGATTAAGACAACGATGGTTACTGAAGTTGCTGCTGGGGAAGAGACTGTAAAAGATGACAACAACAATAGCAACACTGTTGAGGGAAGTGACTGTGTTGTCAAGGATACAGGTGGTAATCAGACTGAGAAAGAAGGAAAAGAGGGCGATGGAAATGAAGACACAGAGAAAAATGGAGATAGTGGAGCCTTGAGCTCCTTCCACCAGCACTCAAGTAGCAAAAACGCATTCACAGGACTTGCTAGCACAGGGTTCTCTGCTTCTTCGTTCTCGTTCGGTTTGGTTCCACAAGAAGGTTCGACTGGGTCTGGTTCTGAACAGTCATCCTTCAGTTTTGGCCAAGCAAACAATGGAAACTCTTCCCTGTTTGGTGCATCCGTTGCTACTTCCATTACCACGAAGAGCACGGAAACTACTACTGCCTTCCCATCAAAGCAAGATGTTTCAGTGGAAACAGGAGAAGAGAACGAAAAAGCAGCCTTCACAGCTGACTCAGTAATGTTCGAATATCTTGAGGGAGGATGGAAAGAGCGTGGGAAAGGAGAACTCAAGGTGAATATATCAACGACTGAAAACAGAAAAGCCAGGTTAGTAATGAGATCAAAAGGAAACTACAGGTTGACCTTAAACGCAAGTCTTTACCCGGAAATGAAACTGGCTAAAATGGACAAGAAAGGAATCACATTTGCTTGTGTGAATAGTGTAAGTGACGCCAAGGATGGTCTCTCTACATTGGCACTGAAGTTCAAGGACCCAACAGTGGTGGAAGAGTTCCGAGCAGTTATCGAAGAACATAAAGACAGTAAACCTTCCGTTGCAGAAGCAGCAGCTCCTTTGAAGACACCTGAGAACTCACCGAGTGCTGAAGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

49.11

Weight (kDa)

4.74

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUP50 PF08911 13 - 77 1.1e-15 NUP50 (Nucleoporin 50 kDa)
Ran_BP1 PF00638 324 - 440 2.2e-17 RanBP1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 620
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 224
AciI CCGC 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 3 cut(s) 567, 835, 1283
AcyI GRCGYC 1 cut(s) 1233
AdeI CACNNNGTG 2 cut(s) 413, 1382
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 3 cut(s) 224, 815, 1282
AgsI TTSAA 3 cut(s) 127, 1270, 1360
AjnI CCWGG 2 cut(s) 73, 1106
AluBI AGCT 6 cut(s) 58, 209, 503, 717, 1010, 1352
AluI AGCT 6 cut(s) 58, 209, 503, 717, 1010, 1352
Alw21I GWGCWC 2 cut(s) 719, 929
Alw26I GTCTC 5 cut(s) 66, 305, 398, 560, 1250
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 1 cut(s) 859
ApeKI GCWGC 6 cut(s) 269, 272, 554, 998, 1346, 1349
ApoI RAATTY 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 880
Asp718I GGTACC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 1273
AsuC2I CCSGG 1 cut(s) 1166
AsuHPI GGTGA 4 cut(s) 368, 425, 1087, 1368
AsuII TTCGAA 1 cut(s) 1026
AsuNHI GCTAGC 1 cut(s) 764
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 1273
BalI TGGCCA 1 cut(s) 861
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 719
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 4 cut(s) 102, 525, 687, 1367
Bbv12I GWGCWC 2 cut(s) 719, 929
BbvI GCAGC 6 cut(s) 256, 259, 541, 1010, 1358, 1361
BccI CCATC 8 cut(s) 317, 347, 443, 532, 665, 958, 1038, 1235
BciT130I CCWGG 2 cut(s) 75, 1108
BciVI GTATCC 1 cut(s) 622
BcnI CCSGG 1 cut(s) 1166
BcoDI GTCTC 5 cut(s) 66, 305, 398, 560, 1250
BfaI CTAG 2 cut(s) 135, 765
BfmI CTRYAG 3 cut(s) 273, 390, 1135
BfuI GTATCC 1 cut(s) 622
BisI GCNGC 6 cut(s) 270, 273, 555, 999, 1347, 1350
BlsI GCNGC 6 cut(s) 271, 274, 556, 1000, 1348, 1351
Bme1390I CCNGG 3 cut(s) 75, 1108, 1166
Bme18I GGWCC 1 cut(s) 1273
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 1273
BmiI GGNNCC 5 cut(s) 121, 240, 709, 807, 1275
BmrFI CCNGG 3 cut(s) 75, 1108, 1166
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 4 cut(s) 325, 376, 905, 1381
BmtI GCTAGC 1 cut(s) 768
BmuI ACTGGG 1 cut(s) 834
BpiI GAAGAC 4 cut(s) 102, 525, 687, 1367
BplI GAGNNNNNCTC 2 cut(s) 31, 63
Bpu14I TTCGAA 1 cut(s) 1026
BpuEI CTTGAG 4 cut(s) 718, 733, 1055, 1055
BpuMI CCSGG 1 cut(s) 1166
Bsa29I ATCGAT 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 1233
BsaI GGTCTC 1 cut(s) 1250
BsaJI CCNNGG 3 cut(s) 342, 435, 1236
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 815, 1282
Bse1I ACTGG 4 cut(s) 229, 321, 829, 1182
BseBI CCWGG 2 cut(s) 75, 1108
BseCI ATCGAT 1 cut(s) 187
BseDI CCNNGG 3 cut(s) 342, 435, 1236
BseGI GGATG 4 cut(s) 845, 896, 1049, 1246
BseLI CCNNNNNNNGG 3 cut(s) 224, 815, 1282
BseMII CTCAG 3 cut(s) 639, 1029, 1359
BseNI ACTGG 4 cut(s) 229, 321, 829, 1182
BseXI GCAGC 6 cut(s) 256, 259, 541, 1010, 1358, 1361
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 2 cut(s) 90, 183
BshFI GGCC 1 cut(s) 861
BshNI GGYRCC 1 cut(s) 119
BshVI ATCGAT 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 719, 929
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 1166
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 224, 815, 1282
BsmAI GTCTC 5 cut(s) 66, 305, 398, 560, 1250
BsmFI GGGAC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 749
BsnI GGCC 1 cut(s) 861
Bso31I GGTCTC 1 cut(s) 1250
BsoBI CYCGRG 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 1026
Bsp1286I GDGCHC 2 cut(s) 719, 929
Bsp143I GATC 3 cut(s) 184, 188, 1121
BspACI CCGC 1 cut(s) 299
BspANI GGCC 1 cut(s) 861
BspCNI CTCAG 3 cut(s) 640, 1028, 1360
BspDI ATCGAT 1 cut(s) 187
BspLI GGNNCC 5 cut(s) 121, 240, 709, 807, 1275
BspMAI CTGCAG 1 cut(s) 277
BspOI GCTAGC 1 cut(s) 768
BspQI GCTCTTC 1 cut(s) 917
BspT104I TTCGAA 1 cut(s) 1026
BspT107I GGYRCC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 1250
BsrI ACTGG 4 cut(s) 229, 321, 829, 1182
BssECI CCNNGG 3 cut(s) 342, 435, 1236
BssMI GATC 3 cut(s) 184, 188, 1121
BssNI GRCGYC 1 cut(s) 1233
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 3 cut(s) 342, 435, 1236
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 75, 1108
Bst4CI ACNGT 7 cut(s) 362, 571, 601, 617, 843, 1282, 1325
Bst6I CTCTTC 5 cut(s) 558, 886, 917, 978, 1284
BstACI GRCGYC 1 cut(s) 1233
BstAPI GCANNNNNTGC 2 cut(s) 386, 902
BstBI TTCGAA 1 cut(s) 1026
BstC8I GCNNGC 2 cut(s) 154, 766
BstDEI CTNAG 4 cut(s) 429, 648, 1015, 1368
BstF5I GGATG 4 cut(s) 845, 896, 1049, 1246
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 3 cut(s) 187, 191, 1124
BstMAI GTCTC 5 cut(s) 66, 305, 398, 560, 1250
BstMBI GATC 3 cut(s) 184, 188, 1121
BstMWI GCNNNNNNNGC 6 cut(s) 206, 386, 902, 1007, 1346, 1391
BstNI CCWGG 2 cut(s) 75, 1108
BstSCI CCNGG 3 cut(s) 73, 1106, 1164
BstSFI CTRYAG 3 cut(s) 273, 390, 1135
BstV1I GCAGC 6 cut(s) 256, 259, 541, 1010, 1358, 1361
BstV2I GAAGAC 4 cut(s) 102, 525, 687, 1367
Bsu15I ATCGAT 1 cut(s) 187
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 1 cut(s) 861
BsuTUI ATCGAT 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 4 cut(s) 845, 896, 1049, 1246
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 6 cut(s) 129, 314, 597, 975, 1259, 1287
Cac8I GCNNGC 2 cut(s) 154, 766
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 1273
ClaI ATCGAT 1 cut(s) 187
CseI GACGC 2 cut(s) 386, 1241
Csp6I GTAC 1 cut(s) 120
CspCI CAANNNNNGTGG 2 cut(s) 1266, 1301
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 4 cut(s) 429, 648, 1015, 1368
DpnI GATC 3 cut(s) 186, 190, 1123
DpnII GATC 3 cut(s) 184, 188, 1121
DraIII CACNNNGTG 2 cut(s) 413, 1382
DrdI GACNNNNNNGTC 1 cut(s) 620
DseDI GACNNNNNNGTC 1 cut(s) 620
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 5 cut(s) 558, 886, 917, 978, 1284
EarI CTCTTC 5 cut(s) 558, 886, 917, 978, 1284
Ecl136II GAGCTC 1 cut(s) 717
Eco130I CCWWGG 3 cut(s) 342, 435, 1236
Eco24I GRGCYC 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 1250
Eco47I GGWCC 1 cut(s) 1273
Eco53kI GAGCTC 1 cut(s) 717
Eco57I CTGAAG 3 cut(s) 567, 835, 1283
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 717
EcoO109I RGGNCCY 1 cut(s) 1273
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 73, 1106
EcoT14I CCWWGG 3 cut(s) 342, 435, 1236
EcoT38I GRGCYC 1 cut(s) 719
ErhI CCWWGG 3 cut(s) 342, 435, 1236
FaiI YATR 3 cut(s) 23, 1082, 1317
FaqI GGGAC 1 cut(s) 20
FauI CCCGC 1 cut(s) 292
Fnu4HI GCNGC 6 cut(s) 270, 273, 555, 999, 1347, 1350
FokI GGATG 4 cut(s) 832, 883, 1056, 1253
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 6 cut(s) 270, 273, 555, 999, 1347, 1350
FspBI CTAG 2 cut(s) 135, 765
GlaI GCGC 1 cut(s) 179
GluI GCNGC 6 cut(s) 270, 273, 555, 999, 1347, 1350
GsaI CCCAGC 1 cut(s) 561
HaeIII GGCC 1 cut(s) 861
HapII CCGG 1 cut(s) 1166
HgaI GACGC 2 cut(s) 386, 1241
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 1233
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 1143
HindII GTYRAC 1 cut(s) 1143
HinfI GANTC 3 cut(s) 8, 1013, 1200
HpaII CCGG 1 cut(s) 1166
HphI GGTGA 4 cut(s) 368, 425, 1087, 1368
Hpy166II GTNNAC 3 cut(s) 508, 1143, 1328
Hpy188I TCNGA 7 cut(s) 13, 51, 170, 334, 645, 838, 1298
Hpy188III TCNNGA 5 cut(s) 33, 65, 80, 112, 1034
Hpy8I GTNNAC 3 cut(s) 508, 1143, 1328
HpyCH4III ACNGT 7 cut(s) 362, 571, 601, 617, 843, 1282, 1325
HpyCH4V TGCA 5 cut(s) 107, 200, 275, 896, 1340
HpyF10VI GCNNNNNNNGC 6 cut(s) 206, 386, 902, 1007, 1346, 1391
HpyF3I CTNAG 4 cut(s) 429, 648, 1015, 1368
Hsp92I GRCGYC 1 cut(s) 1233
HspAI GCGC 1 cut(s) 178
KpnI GGTACC 1 cut(s) 123
Kzo9I GATC 3 cut(s) 184, 188, 1121
LguI GCTCTTC 1 cut(s) 917
LmnI GCTCC 6 cut(s) 256, 262, 500, 707, 722, 1357
Lsp1109I GCAGC 6 cut(s) 256, 259, 541, 1010, 1358, 1361
LweI GCATC 4 cut(s) 325, 376, 905, 1381
MaeI CTAG 2 cut(s) 135, 765
MaeIII GTNAC 6 cut(s) 65, 356, 374, 541, 611, 1229
MalI GATC 3 cut(s) 186, 190, 1123
MboI GATC 3 cut(s) 184, 188, 1121
MfeI CAATTG 1 cut(s) 381
MhlI GDGCHC 2 cut(s) 719, 929
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 4 cut(s) 162, 228, 381, 481
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 2 cut(s) 2, 1007
MnlI CCTC 8 cut(s) 136, 300, 466, 484, 598, 658, 1030, 1034
Mox20I TGGCCA 1 cut(s) 861
MroXI GAANNNNTTC 1 cut(s) 880
MscI TGGCCA 1 cut(s) 861
MseI TTAA 3 cut(s) 480, 528, 1148
Msp20I TGGCCA 1 cut(s) 861
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 1 cut(s) 1166
MspR9I CCNGG 3 cut(s) 75, 1108, 1166
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 749
MvaI CCWGG 2 cut(s) 75, 1108
MwoI GCNNNNNNNGC 6 cut(s) 206, 386, 902, 1007, 1346, 1391
NciI CCSGG 1 cut(s) 1166
NdeII GATC 3 cut(s) 184, 188, 1121
NheI GCTAGC 1 cut(s) 764
NlaIV GGNNCC 5 cut(s) 121, 240, 709, 807, 1275
NmuCI GTSAC 5 cut(s) 65, 356, 374, 611, 1229
NspV TTCGAA 1 cut(s) 1026
PaeR7I CTCGAG 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 917
PctI GAATGC 1 cut(s) 749
PdmI GAANNNNTTC 1 cut(s) 880
PfeI GAWTC 1 cut(s) 1200
PflFI GACNNNGTC 1 cut(s) 826
PflMI CCANNNNNTGG 1 cut(s) 224
PkrI GCNGC 6 cut(s) 271, 274, 556, 1000, 1348, 1351
PleI GAGTC 2 cut(s) 2, 1007
PpsI GAGTC 2 cut(s) 2, 1007
PpuMI RGGWCCY 1 cut(s) 1273
Psp124BI GAGCTC 1 cut(s) 719
Psp5II RGGWCCY 1 cut(s) 1273
Psp6I CCWGG 2 cut(s) 73, 1106
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 73, 1106
PspN4I GGNNCC 5 cut(s) 121, 240, 709, 807, 1275
PspPI GGNCC 1 cut(s) 1273
PspPPI RGGWCCY 1 cut(s) 1273
PstI CTGCAG 1 cut(s) 277
PsyI GACNNNGTC 1 cut(s) 826
PvuII CAGCTG 1 cut(s) 1010
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SacI GAGCTC 1 cut(s) 719
SapI GCTCTTC 1 cut(s) 917
SaqAI TTAA 3 cut(s) 480, 528, 1148
SatI GCNGC 6 cut(s) 270, 273, 555, 999, 1347, 1350
Sau3AI GATC 3 cut(s) 184, 188, 1121
Sau96I GGNCC 1 cut(s) 1273
SchI GAGTC 2 cut(s) 2, 1007
ScrFI CCNGG 3 cut(s) 75, 1108, 1166
SduI GDGCHC 2 cut(s) 719, 929
SfaNI GCATC 4 cut(s) 325, 376, 905, 1381
SfcI CTRYAG 3 cut(s) 273, 390, 1135
Sfr274I CTCGAG 1 cut(s) 110
SfuI TTCGAA 1 cut(s) 1026
SinI GGWCC 1 cut(s) 1273
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 5 cut(s) 110, 712, 733, 1034, 1070
SmoI CTYRAG 5 cut(s) 110, 712, 733, 1034, 1070
Sse9I AATT 4 cut(s) 162, 228, 381, 481
SsiI CCGC 1 cut(s) 299
SspMI CTAG 2 cut(s) 135, 765
SstI GAGCTC 1 cut(s) 719
StyD4I CCNGG 3 cut(s) 73, 1106, 1164
StyI CCWWGG 3 cut(s) 342, 435, 1236
TaaI ACNGT 7 cut(s) 362, 571, 601, 617, 843, 1282, 1325
TaqI TCGA 5 cut(s) 111, 187, 821, 1026, 1308
TasI AATT 4 cut(s) 162, 228, 381, 481
TfiI GAWTC 1 cut(s) 1200
Tru1I TTAA 3 cut(s) 480, 528, 1148
Tru9I TTAA 3 cut(s) 480, 528, 1148
TscAI CASTG 6 cut(s) 136, 321, 604, 975, 1266, 1287
TseFI GTSAC 5 cut(s) 65, 356, 374, 611, 1229
TseI GCWGC 6 cut(s) 269, 272, 554, 998, 1346, 1349
Tsp45I GTSAC 5 cut(s) 65, 356, 374, 611, 1229
TspDTI ATGAA 5 cut(s) 108, 432, 531, 693, 1187
TspGWI ACGGA 4 cut(s) 475, 889, 944, 1324
TspRI CASTG 6 cut(s) 136, 321, 604, 975, 1266, 1287
Tth111I GACNNNGTC 1 cut(s) 826
Van91I CCANNNNNTGG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 1273
XapI RAATTY 1 cut(s) 228
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XhoI CTCGAG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 880
XspI CTAG 2 cut(s) 135, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.