Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007109

Physical Location & Seq

Genomic Coordinates Reverse (-)

58687752 .. 58692100

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG391400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGGGGATTCGGAAAATGCCCTTCCACCTTCTAAGAAACGGGCTGCTGGAAGGGAACTCTCTCGTGATAACCCAGGCCTTGATGATGAAGAGGATAGTTCTGAACTAGAGACTGGAACTTTCAAGAGGGCCAGTGAAGAAGTGCTAGCAACAAGAAAGATTGTTAAGGTTCGTCGCCCTCCGACAAGTTCAGGTCCTTCTTCCAACCCTTTTGCTGGGATACGCTTGGTTCCTCCATCTGAAGCTAGTGCAGACCCTTCTCAAGCCGCCACTGATGTACGACCTGCCAGTGAAGCAAAAGTTTCAGATGATGCTAATCAGCAGTCAGATAGCAAGCCTGAATCTGCTGCAGATAAGGAGAGTGATGTGAAGGAGGAAGACAAAATTCCCAGTGAGGCAACAGAGCCTGGGGTAGCACATGACCAGACTGAGGCTGAATCTGCTGAAGATAAGGAGAACATCGTGAAGGAGAACAGCAATATTTCCAGTGAACCAGCTGTTGGAGAAGATGAGACTAAAAATGATGGTGAGGCTGAAAACGAGGTAAAGACTGTAACTGATGGTGAGACTGGAAATGTTGAGAAGAAGAGTGAAAATGAAGAGAATAGAGAGAAGAAAGATGAAACTGTCGACCCATGTACTGAAGGTGCCACTTTGAACTCATTTCAGCAGCTTTCGAGTAGCCAAAATGCCTTCACAAATCTTTCTGGAACTGGGTTTTCCACTTCCACCTTTTCTTTTGGGCTTATTTCCAAGGGTGGTTCTTCATTGAGTACTGGCACTGGTTCACTTTTTGGGTCAAAAAATGATTTGCCTTCTGGTCTTGGTCTATCTAATAATGGAAGTTCTTCACTCTTTGCCACAGCAGGGCCTTCAATTGTGTCTAGGAGTGACACCCCTTCAATGCAAGAGGTTGCAGTTGAGACTGGAGAAGAAAATGAGAAAGCAGTTTTCACTGCTGATGCGGTGCTGTTTGAATTTATTGATGGAGGCTGGAAAGAGCGTGGAAAGGGAGATCTGAAGGTAAATGTTTCTGAATCTGGGGCTGACAAAGCCAGACTAGTTATGAGAGCCAAGGGAATTAGGAAGGTAATTTTGAATGCAAGTCTTTACCCAGACATGAAGCTTGCAAATATGGAGAAGAAAGGCGTAACGTTTGCCTGCATGAATAGTATCGATGAAAAGAAGGATGGGTTATCCACATTTGCGTTGAAGTTCAAGGATGGGTCCATAGTTGAGGAATTTCGCTCTGCTGTTACAGAACACAAAGGCAAGACAGCTACCGCTATGAAGACTCCTGAAAACTCCCCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0022613 GO:0030163 GO:0031267 GO:0031323 GO:0031326 GO:0031503 GO:0031935 GO:0031938 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051603 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060255 GO:0060968 GO:0065007 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05166 map05166

Pfam Domains

Protein Families

NUP50 Ran_BP1

Protein Analysis

438

Amino Acids

46.5

Weight (kDa)

4.7

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUP50	PF08911	12 - 74	2.4e-16	NUP50 (Nucleoporin 50 kDa)
Ran_BP1	PF00638	307 - 423	7.8e-20	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52380 AT1G52380 AT1G52380 AT1G52380 AT3G15970 AT3G15970
fragaria_vesca	FvH4_6g31000
malus_domestica	MD09G1214400.v1.1 MD17G1196800.v1.1
prunus_persica	Prupe.3G072500_v2.0.a1
pyrus_communis	pycom09g13120 pycom09g13130 pycom17g20180 pycom17g20190
rosa_chinensis	RchiOBHm_Chr2g0137631
rosa_laevigata	RLG00000019665
rosa_multiflora	Rmu_sc0000765.1_g000029
rosa_roxburghii	Rroxscaffold_2G00106980
rosa_rugosa	Rorug02G0343600 Rorug02G0343700
rosa_samantha	Rh2AG391400 Rh2BG399000 Rh2CG378400 Rh2DG414000
rosa_wichuraiana	Rw2G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	647
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	3 cut(s)	267, 965, 1284
AclI	AACGTT	1 cut(s)	1154
AcsI	RAATTY	3 cut(s)	384, 977, 1241
AcuI	CTGAAG	4 cut(s)	261, 465, 663, 1040
AfaI	GTAC	3 cut(s)	279, 640, 775
AfiI	CCNNNNNNNGG	4 cut(s)	215, 430, 500, 867
AgsI	TTSAA	8 cut(s)	124, 658, 876, 903, 977, 1099, 1213, 1219
AhlI	ACTAGT	1 cut(s)	1060
AjnI	CCWGG	2 cut(s)	73, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	5 cut(s)	245, 497, 673, 1126, 1280
AluI	AGCT	5 cut(s)	245, 497, 673, 1126, 1280
Alw26I	GTCTC	4 cut(s)	104, 506, 560, 917
AlwNI	CAGNNNCTG	1 cut(s)	407
AoxI	GGCC	3 cut(s)	76, 129, 869
ApeKI	GCWGC	3 cut(s)	44, 347, 670
ApoI	RAATTY	3 cut(s)	384, 977, 1241
Asp700I	GAANNNNTTC	1 cut(s)	847
AspS9I	GGNCC	4 cut(s)	129, 194, 869, 1227
AsuHPI	GGTGA	2 cut(s)	539, 575
AsuNHI	GCTAGC	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	194, 1227
BanI	GGYRCC	1 cut(s)	647
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	2 cut(s)	384, 1298
BbvI	GCAGC	3 cut(s)	31, 334, 682
BccI	CCATC	6 cut(s)	244, 518, 554, 980, 1184, 1217
BciT130I	CCWGG	2 cut(s)	75, 408
BciVI	GTATCC	1 cut(s)	213
BcoDI	GTCTC	4 cut(s)	104, 506, 560, 917
BcuI	ACTAGT	1 cut(s)	1060
BfaI	CTAG	5 cut(s)	107, 146, 246, 885, 1061
BfmI	CTRYAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	213
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	4 cut(s)	45, 267, 348, 671
BlsI	GCNGC	4 cut(s)	46, 268, 349, 672
BmcAI	AGTACT	1 cut(s)	775
Bme1390I	CCNGG	2 cut(s)	75, 408
Bme18I	GGWCC	2 cut(s)	194, 1227
BmgT120I	GGNCC	4 cut(s)	129, 194, 869, 1227
BmiI	GGNNCC	3 cut(s)	231, 649, 1228
BmrFI	CCNGG	2 cut(s)	75, 408
BmrI	ACTGGG	2 cut(s)	384, 723
BmsI	GCATC	2 cut(s)	301, 952
BmtI	GCTAGC	1 cut(s)	149
BmuI	ACTGGG	2 cut(s)	384, 723
BpiI	GAAGAC	2 cut(s)	384, 1298
BpmI	CTGGAG	1 cut(s)	948
BpuEI	CTTGAG	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	1176
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	4 cut(s)	73, 407, 753, 1074
Bsc4I	CCNNNNNNNGG	4 cut(s)	215, 430, 500, 867
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	75, 408
BseCI	ATCGAT	1 cut(s)	1176
BseDI	CCNNGG	4 cut(s)	73, 407, 753, 1074
BseGI	GGATG	2 cut(s)	1195, 1228
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	4 cut(s)	215, 430, 500, 867
BseMII	CTCAG	1 cut(s)	420
BseXI	GCAGC	3 cut(s)	31, 334, 682
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	78, 131, 871
BshNI	GGYRCC	1 cut(s)	647
BshVI	ATCGAT	1 cut(s)	1176
BslI	CCNNNNNNNGG	4 cut(s)	215, 430, 500, 867
BsmAI	GTCTC	4 cut(s)	104, 506, 560, 917
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	3 cut(s)	78, 131, 871
Bsp143I	GATC	1 cut(s)	1015
BspACI	CCGC	3 cut(s)	267, 965, 1284
BspANI	GGCC	3 cut(s)	78, 131, 871
BspCNI	CTCAG	1 cut(s)	421
BspDI	ATCGAT	1 cut(s)	1176
BspLI	GGNNCC	3 cut(s)	231, 649, 1228
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	647
BssECI	CCNNGG	4 cut(s)	73, 407, 753, 1074
BssMI	GATC	1 cut(s)	1015
BssSI	CACGAG	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	753, 1074
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	75, 408
Bst4CI	ACNGT	2 cut(s)	553, 628
Bst6I	CTCTTC	3 cut(s)	84, 581, 594
BstC8I	GCNNGC	4 cut(s)	147, 335, 1128, 1162
BstDEI	CTNAG	2 cut(s)	33, 429
BstF5I	GGATG	2 cut(s)	1195, 1228
BstKTI	GATC	1 cut(s)	1018
BstMAI	GTCTC	4 cut(s)	104, 506, 560, 917
BstMBI	GATC	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 440, 1052
BstNI	CCWGG	2 cut(s)	75, 408
BstSCI	CCNGG	2 cut(s)	73, 406
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	31, 334, 682
BstV2I	GAAGAC	2 cut(s)	384, 1298
BstX2I	RGATCY	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	1015
Bsu15I	ATCGAT	1 cut(s)	1176
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	78, 131, 871
BsuTUI	ATCGAT	1 cut(s)	1176
BtsCI	GGATG	2 cut(s)	1195, 1228
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	7 cut(s)	139, 270, 295, 397, 493, 780, 954
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	4 cut(s)	147, 335, 1128, 1162
CaiI	CAGNNNCTG	1 cut(s)	407
Cfr13I	GGNCC	4 cut(s)	129, 194, 869, 1227
ClaI	ATCGAT	1 cut(s)	1176
Csp6I	GTAC	3 cut(s)	278, 639, 774
CviAII	CATG	4 cut(s)	419, 636, 1120, 1165
CviQI	GTAC	3 cut(s)	278, 639, 774
DdeI	CTNAG	2 cut(s)	33, 429
DpnI	GATC	1 cut(s)	1017
DpnII	GATC	1 cut(s)	1015
Eam1104I	CTCTTC	3 cut(s)	84, 581, 594
EarI	CTCTTC	3 cut(s)	84, 581, 594
Eco130I	CCWWGG	2 cut(s)	753, 1074
Eco147I	AGGCCT	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	194, 1227
Eco57I	CTGAAG	4 cut(s)	261, 465, 663, 1040
EcoO109I	RGGNCCY	2 cut(s)	194, 869
EcoRII	CCWGG	2 cut(s)	73, 406
EcoT14I	CCWWGG	2 cut(s)	753, 1074
ErhI	CCWWGG	2 cut(s)	753, 1074
FaeI	CATG	4 cut(s)	422, 639, 1123, 1168
FaiI	YATR	8 cut(s)	420, 637, 1067, 1121, 1136, 1166, 1232, 1289
FatI	CATG	4 cut(s)	418, 635, 1119, 1164
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	4 cut(s)	45, 267, 348, 671
FokI	GGATG	2 cut(s)	1202, 1235
Fsp4HI	GCNGC	4 cut(s)	45, 267, 348, 671
FspBI	CTAG	5 cut(s)	107, 146, 246, 885, 1061
GluI	GCNGC	4 cut(s)	45, 267, 348, 671
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	948
HaeIII	GGCC	3 cut(s)	78, 131, 871
Hin1II	CATG	4 cut(s)	422, 639, 1123, 1168
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	1124
HinfI	GANTC	5 cut(s)	8, 341, 437, 1037, 1294
HphI	GGTGA	2 cut(s)	539, 575
Hpy166II	GTNNAC	3 cut(s)	491, 631, 788
Hpy188I	TCNGA	8 cut(s)	13, 103, 183, 241, 307, 328, 1020, 1036
Hpy188III	TCNNGA	5 cut(s)	65, 124, 463, 708, 1298
Hpy8I	GTNNAC	3 cut(s)	491, 631, 788
Hpy99I	CGWCG	1 cut(s)	177
HpyCH4III	ACNGT	2 cut(s)	553, 628
HpyCH4IV	ACGT	1 cut(s)	1154
HpyCH4V	TGCA	7 cut(s)	251, 350, 907, 917, 1103, 1130, 1164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 440, 1052
HpyF3I	CTNAG	2 cut(s)	33, 429
HpySE526I	ACGT	1 cut(s)	1154
Hsp92II	CATG	4 cut(s)	422, 639, 1123, 1168
Kzo9I	GATC	1 cut(s)	1015
Lsp1109I	GCAGC	3 cut(s)	31, 334, 682
LweI	GCATC	2 cut(s)	301, 952
MaeI	CTAG	5 cut(s)	107, 146, 246, 885, 1061
MaeII	ACGT	1 cut(s)	1154
MaeIII	GTNAC	4 cut(s)	553, 890, 1150, 1255
MalI	GATC	1 cut(s)	1017
MboI	GATC	1 cut(s)	1015
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	1 cut(s)	1015
MluCI	AATT	6 cut(s)	384, 876, 977, 1080, 1092, 1241
MlyI	GAGTC	1 cut(s)	1288
MmeI	TCCRAC	3 cut(s)	206, 228, 481
MroXI	GAANNNNTTC	1 cut(s)	847
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	75, 408
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	1105
MvaI	CCWGG	2 cut(s)	75, 408
MwoI	GCNNNNNNNGC	3 cut(s)	293, 440, 1052
NdeII	GATC	1 cut(s)	1015
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	422, 639, 1123, 1168
NlaIV	GGNNCC	3 cut(s)	231, 649, 1228
NmuCI	GTSAC	1 cut(s)	890
PceI	AGGCCT	1 cut(s)	78
PctI	GAATGC	1 cut(s)	1105
PdmI	GAANNNNTTC	1 cut(s)	847
PfeI	GAWTC	4 cut(s)	8, 341, 437, 1037
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	4 cut(s)	46, 268, 349, 672
PleI	GAGTC	1 cut(s)	1288
PpsI	GAGTC	1 cut(s)	1288
PpuMI	RGGWCCY	1 cut(s)	194
Psp1406I	AACGTT	1 cut(s)	1154
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	73, 406
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	2 cut(s)	73, 406
PspN4I	GGNNCC	3 cut(s)	231, 649, 1228
PspPI	GGNCC	4 cut(s)	129, 194, 869, 1227
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	1015
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	3 cut(s)	279, 640, 775
RsaNI	GTAC	3 cut(s)	278, 639, 774
SalI	GTCGAC	1 cut(s)	629
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	45, 267, 348, 671
Sau3AI	GATC	1 cut(s)	1015
Sau96I	GGNCC	4 cut(s)	129, 194, 869, 1227
ScaI	AGTACT	1 cut(s)	775
SchI	GAGTC	1 cut(s)	1288
ScrFI	CCNGG	2 cut(s)	75, 408
SfaNI	GCATC	2 cut(s)	301, 952
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	2 cut(s)	194, 1227
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
SpeI	ACTAGT	1 cut(s)	1060
Sse9I	AATT	6 cut(s)	384, 876, 977, 1080, 1092, 1241
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	3 cut(s)	267, 965, 1284
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	5 cut(s)	107, 146, 246, 885, 1061
StuI	AGGCCT	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	73, 406
StyI	CCWWGG	2 cut(s)	753, 1074
TaaI	ACNGT	2 cut(s)	553, 628
TaiI	ACGT	1 cut(s)	1157
TaqI	TCGA	3 cut(s)	630, 677, 1176
TasI	AATT	6 cut(s)	384, 876, 977, 1080, 1092, 1241
TatI	WGTACW	2 cut(s)	638, 773
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	4 cut(s)	8, 341, 437, 1037
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	7 cut(s)	139, 277, 295, 397, 493, 787, 961
TseFI	GTSAC	1 cut(s)	890
TseI	GCWGC	3 cut(s)	44, 347, 670
Tsp45I	GTSAC	1 cut(s)	890
TspDTI	ATGAA	8 cut(s)	102, 612, 636, 756, 1136, 1181, 1194, 1304
TspRI	CASTG	7 cut(s)	139, 277, 295, 397, 493, 787, 961
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	194, 1227
XapI	RAATTY	3 cut(s)	384, 977, 1241
XmiI	GTMKAC	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	847
XspI	CTAG	5 cut(s)	107, 146, 246, 885, 1061
ZrmI	AGTACT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.