Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007109

Physical Location & Seq

Genomic Coordinates Reverse (-)

55153485 .. 55154798

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCGGATTCAGAAAATGCCCTTCCACCTTCTAAGAAACGAGCTGCTGGAAGGGAACTCTCTCGTGATAACCCAGGCCTTGATGATGAGGAGGATAGTTCTGAACTAGAGACTGGAACTTTCAAGAGGGCCAGTGAAGAAGTGCTAGCAACAAGAAAGATTGTTAAGGTACGTCGCCCTCCGACAAGTTCAGGTCCTTCTTCCAACCCTTTTGCTGGGATACGCTTGGTTCCTCCATCTGAAGCTAGTGCAGACCCTTATCAAGCCGCCACTGATGTACAACCTGCCAGTGAGTCAAGAGTTTCAGATGATGCTAATCAGCAGTCAGATAGCAAGCCTGAATCTGCTGCAGATAAGGAGAGTGATGTGAAGGAGGAAGACAAAATTCCCAGTGAGGCAACAGAGCCTGGGGTAGCACATGACCAGACTGAGGCTGAATCTGCTGAAGATAAGGAGAACATCGTTAAGGAGAACAGCAATATTTCCAGTGAACCAGCTGTTGGAGAAGATAAGACTAAAAATGATGGTGAGGCTGAAAACGAGGTAAAGACTGTAACTGATGGTGAGACTGGAAATGTTGAGAAGAGTGAAAATGAAGAGAAGAGAGAGAAGAAAGATGAAACTGTCGACCCATGTACTGAAGGGCCTTCAATTGTGTCTAGGACTGACACCCCTTCAATGCAAGAGGTTGCAGTTGAGACTGGAGAAGAAAATGAGAAAGCAGTTTTCACTGCTGATGCGGTGCTGTTTGAATTTATTGATGGAGGCTGGAAAGAGCGTGGAAAGGGAGATCTGAAGGTAAATGTTTCTGAATCTGGGGCTGACAAAGCCAGACTAGTTATGAGAGCCAAGGGAATTAGGAAGGTAATTTTGAATGCAAGTCTTTACCCAGACATGAAGCTTGCAAATATGGAGAAGAAAGGCGTAACGTTTGCCTGCATGAATAGTATCGATGAAAAGAAGGATGGGTTATCCACATTTGCGTTGAAGTTCAAGGATGGGTCCATAGTTGAGGAATTTCGCTCTGCTGTTACAGAACACAAAGGCAAGACAGCTACCGCTATGAAGACTCCTGAAAACTCCCCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0022613 GO:0030163 GO:0031267 GO:0031323 GO:0031326 GO:0031503 GO:0031935 GO:0031938 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051603 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060255 GO:0060968 GO:0065007 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05166 map05166

Pfam Domains

Protein Families

NUP50 Ran_BP1

Protein Analysis

364

Amino Acids

39.26

Weight (kDa)

4.69

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUP50	PF08911	12 - 74	1.8e-16	NUP50 (Nucleoporin 50 kDa)
Ran_BP1	PF00638	232 - 348	5.4e-20	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52380 AT1G52380 AT1G52380 AT1G52380 AT3G15970 AT3G15970
fragaria_vesca	FvH4_6g31000
malus_domestica	MD09G1214400.v1.1 MD17G1196800.v1.1
prunus_persica	Prupe.3G072500_v2.0.a1
pyrus_communis	pycom09g13120 pycom09g13130 pycom17g20180 pycom17g20190
rosa_chinensis	RchiOBHm_Chr2g0137631
rosa_laevigata	RLG00000019665
rosa_multiflora	Rmu_sc0000765.1_g000029
rosa_roxburghii	Rroxscaffold_2G00106980
rosa_rugosa	Rorug02G0343600 Rorug02G0343700
rosa_samantha	Rh2AG391400 Rh2BG399000 Rh2CG378400 Rh2DG414000
rosa_wichuraiana	Rw2G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	4 cut(s)	5, 267, 740, 1059
AclI	AACGTT	1 cut(s)	929
AcsI	RAATTY	3 cut(s)	384, 752, 1016
AcuI	CTGAAG	4 cut(s)	261, 465, 660, 815
AfaI	GTAC	3 cut(s)	171, 279, 637
AfiI	CCNNNNNNNGG	3 cut(s)	215, 430, 500
AgsI	TTSAA	7 cut(s)	124, 651, 678, 752, 874, 988, 994
AhlI	ACTAGT	1 cut(s)	835
AjnI	CCWGG	2 cut(s)	73, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	5 cut(s)	44, 245, 497, 901, 1055
AluI	AGCT	5 cut(s)	44, 245, 497, 901, 1055
Alw26I	GTCTC	3 cut(s)	104, 560, 692
AlwNI	CAGNNNCTG	1 cut(s)	407
AoxI	GGCC	3 cut(s)	76, 129, 644
ApeKI	GCWGC	2 cut(s)	44, 347
ApoI	RAATTY	3 cut(s)	384, 752, 1016
AspS9I	GGNCC	4 cut(s)	129, 194, 644, 1002
AsuHPI	GGTGA	2 cut(s)	539, 575
AsuNHI	GCTAGC	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	194, 1002
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	2 cut(s)	384, 1073
BbvI	GCAGC	2 cut(s)	31, 334
BccI	CCATC	6 cut(s)	244, 518, 554, 755, 959, 992
BciT130I	CCWGG	2 cut(s)	75, 408
BciVI	GTATCC	1 cut(s)	213
BcoDI	GTCTC	3 cut(s)	104, 560, 692
BcuI	ACTAGT	1 cut(s)	835
BfaI	CTAG	5 cut(s)	107, 146, 246, 660, 836
BfmI	CTRYAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	213
BglII	AGATCT	1 cut(s)	790
BisI	GCNGC	3 cut(s)	45, 267, 348
BlsI	GCNGC	3 cut(s)	46, 268, 349
Bme1390I	CCNGG	2 cut(s)	75, 408
Bme18I	GGWCC	2 cut(s)	194, 1002
BmgT120I	GGNCC	4 cut(s)	129, 194, 644, 1002
BmiI	GGNNCC	2 cut(s)	231, 1003
BmrFI	CCNGG	2 cut(s)	75, 408
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	301, 727
BmtI	GCTAGC	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	384, 1073
BpmI	CTGGAG	1 cut(s)	723
Bsa29I	ATCGAT	1 cut(s)	951
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	73, 407, 849
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 430, 500
Bse1I	ACTGG	7 cut(s)	118, 132, 288, 390, 486, 574, 706
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	75, 408
BseCI	ATCGAT	1 cut(s)	951
BseDI	CCNNGG	3 cut(s)	73, 407, 849
BseGI	GGATG	2 cut(s)	970, 1003
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	3 cut(s)	215, 430, 500
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	7 cut(s)	118, 132, 288, 390, 486, 574, 706
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	31, 334
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	78, 131, 646
BshVI	ATCGAT	1 cut(s)	951
BslI	CCNNNNNNNGG	3 cut(s)	215, 430, 500
BsmAI	GTCTC	3 cut(s)	104, 560, 692
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	3 cut(s)	78, 131, 646
Bsp1407I	TGTACA	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	790
BspACI	CCGC	4 cut(s)	5, 267, 740, 1059
BspANI	GGCC	3 cut(s)	78, 131, 646
BspCNI	CTCAG	1 cut(s)	421
BspDI	ATCGAT	1 cut(s)	951
BspLI	GGNNCC	2 cut(s)	231, 1003
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	277
BsrI	ACTGG	7 cut(s)	118, 132, 288, 390, 486, 574, 706
BssECI	CCNNGG	3 cut(s)	73, 407, 849
BssMI	GATC	1 cut(s)	790
BssSI	CACGAG	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	849
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	75, 408
Bst4CI	ACNGT	2 cut(s)	553, 625
Bst6I	CTCTTC	3 cut(s)	578, 591, 596
BstAUI	TGTACA	1 cut(s)	277
BstC8I	GCNNGC	4 cut(s)	147, 335, 903, 937
BstDEI	CTNAG	2 cut(s)	33, 429
BstF5I	GGATG	2 cut(s)	970, 1003
BstKTI	GATC	1 cut(s)	793
BstMAI	GTCTC	3 cut(s)	104, 560, 692
BstMBI	GATC	1 cut(s)	790
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 827
BstNI	CCWGG	2 cut(s)	75, 408
BstSCI	CCNGG	2 cut(s)	73, 406
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	31, 334
BstV2I	GAAGAC	2 cut(s)	384, 1073
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
Bsu15I	ATCGAT	1 cut(s)	951
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	78, 131, 646
BsuTUI	ATCGAT	1 cut(s)	951
BtsCI	GGATG	2 cut(s)	970, 1003
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	6 cut(s)	139, 270, 295, 397, 493, 729
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	4 cut(s)	147, 335, 903, 937
CaiI	CAGNNNCTG	1 cut(s)	407
Cfr13I	GGNCC	4 cut(s)	129, 194, 644, 1002
ClaI	ATCGAT	1 cut(s)	951
Csp6I	GTAC	3 cut(s)	170, 278, 636
CviAII	CATG	4 cut(s)	419, 633, 895, 940
CviQI	GTAC	3 cut(s)	170, 278, 636
DdeI	CTNAG	2 cut(s)	33, 429
DpnI	GATC	1 cut(s)	792
DpnII	GATC	1 cut(s)	790
Eam1104I	CTCTTC	3 cut(s)	578, 591, 596
EarI	CTCTTC	3 cut(s)	578, 591, 596
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	849
Eco147I	AGGCCT	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	194, 1002
Eco57I	CTGAAG	4 cut(s)	261, 465, 660, 815
EcoO109I	RGGNCCY	2 cut(s)	194, 644
EcoRII	CCWGG	2 cut(s)	73, 406
EcoT14I	CCWWGG	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	4 cut(s)	422, 636, 898, 943
FaiI	YATR	8 cut(s)	420, 634, 842, 896, 911, 941, 1007, 1064
FatI	CATG	4 cut(s)	418, 632, 894, 939
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	3 cut(s)	45, 267, 348
FokI	GGATG	2 cut(s)	977, 1010
Fsp4HI	GCNGC	3 cut(s)	45, 267, 348
FspBI	CTAG	5 cut(s)	107, 146, 246, 660, 836
GluI	GCNGC	3 cut(s)	45, 267, 348
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	3 cut(s)	78, 131, 646
Hin1II	CATG	4 cut(s)	422, 636, 898, 943
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	6 cut(s)	8, 293, 341, 437, 812, 1069
HphI	GGTGA	2 cut(s)	539, 575
Hpy166II	GTNNAC	2 cut(s)	491, 628
Hpy188I	TCNGA	8 cut(s)	13, 103, 183, 241, 307, 328, 795, 811
Hpy188III	TCNNGA	4 cut(s)	65, 124, 297, 1073
Hpy8I	GTNNAC	2 cut(s)	491, 628
Hpy99I	CGWCG	1 cut(s)	177
HpyCH4III	ACNGT	2 cut(s)	553, 625
HpyCH4IV	ACGT	2 cut(s)	172, 929
HpyCH4V	TGCA	7 cut(s)	251, 350, 682, 692, 878, 905, 939
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 827
HpyF3I	CTNAG	2 cut(s)	33, 429
HpySE526I	ACGT	2 cut(s)	172, 929
Hsp92II	CATG	4 cut(s)	422, 636, 898, 943
Kzo9I	GATC	1 cut(s)	790
Lsp1109I	GCAGC	2 cut(s)	31, 334
LweI	GCATC	2 cut(s)	301, 727
MaeI	CTAG	5 cut(s)	107, 146, 246, 660, 836
MaeII	ACGT	2 cut(s)	172, 929
MaeIII	GTNAC	3 cut(s)	553, 925, 1030
MalI	GATC	1 cut(s)	792
MboI	GATC	1 cut(s)	790
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	790
MluCI	AATT	6 cut(s)	384, 651, 752, 855, 867, 1016
MlyI	GAGTC	2 cut(s)	302, 1063
MmeI	TCCRAC	3 cut(s)	206, 228, 481
MseI	TTAA	2 cut(s)	165, 465
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	75, 408
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	2 cut(s)	75, 408
MwoI	GCNNNNNNNGC	2 cut(s)	440, 827
NdeII	GATC	1 cut(s)	790
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	422, 636, 898, 943
NlaIV	GGNNCC	2 cut(s)	231, 1003
PceI	AGGCCT	1 cut(s)	78
PctI	GAATGC	1 cut(s)	880
PfeI	GAWTC	4 cut(s)	8, 341, 437, 812
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	46, 268, 349
PleI	GAGTC	2 cut(s)	301, 1063
PpsI	GAGTC	2 cut(s)	301, 1063
PpuMI	RGGWCCY	1 cut(s)	194
Psp1406I	AACGTT	1 cut(s)	929
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	73, 406
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	2 cut(s)	73, 406
PspN4I	GGNNCC	2 cut(s)	231, 1003
PspPI	GGNCC	4 cut(s)	129, 194, 644, 1002
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	790
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	3 cut(s)	171, 279, 637
RsaNI	GTAC	3 cut(s)	170, 278, 636
SalI	GTCGAC	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	165, 465
SatI	GCNGC	3 cut(s)	45, 267, 348
Sau3AI	GATC	1 cut(s)	790
Sau96I	GGNCC	4 cut(s)	129, 194, 644, 1002
SchI	GAGTC	2 cut(s)	302, 1063
ScrFI	CCNGG	2 cut(s)	75, 408
SfaNI	GCATC	2 cut(s)	301, 727
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	2 cut(s)	194, 1002
SpeI	ACTAGT	1 cut(s)	835
Sse9I	AATT	6 cut(s)	384, 651, 752, 855, 867, 1016
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	4 cut(s)	5, 267, 740, 1059
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	5 cut(s)	107, 146, 246, 660, 836
StuI	AGGCCT	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	73, 406
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	553, 625
TaiI	ACGT	2 cut(s)	175, 932
TaqI	TCGA	2 cut(s)	627, 951
TasI	AATT	6 cut(s)	384, 651, 752, 855, 867, 1016
TatI	WGTACW	2 cut(s)	277, 635
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	4 cut(s)	8, 341, 437, 812
Tru1I	TTAA	2 cut(s)	165, 465
Tru9I	TTAA	2 cut(s)	165, 465
TscAI	CASTG	6 cut(s)	139, 277, 295, 397, 493, 736
TseI	GCWGC	2 cut(s)	44, 347
TspDTI	ATGAA	6 cut(s)	609, 633, 911, 956, 969, 1079
TspRI	CASTG	6 cut(s)	139, 277, 295, 397, 493, 736
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	194, 1002
XapI	RAATTY	3 cut(s)	384, 752, 1016
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	5 cut(s)	107, 146, 246, 660, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.