Prupe.3G072500_v2.0.a1

NUP50 (Nucleoporin 50 kDa)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
5204560 .. 5207720
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G072500.1

Sequence Viewer

Length: 1248 bp
ATGGCGGATTCGGAAAATGCCCTTCCACCTTCTAAGAAGCGAGCTGCTGGAAGGGAACTCTCTCGGGATAACCCAGGCCTTGATGACGAAGAAGATGCTCTTGAACAAGAGACTGGAACTTTCAAGAGGGCCAGTGAGGAGGTGCTGGCAACCCGAAGAATTGTTAAGGTTCGCCGCCAGCAGCCAGCATCTGGTCCTACTTCCAATCCTTTTGCTGGTATACAGTTGGTTCCTCCAACAGAAGGAAGCGCAGTCCCTGCTGAAGTTACAGCTGCTGCACAACCTGCCAGTGAGATAAGGGTTTCAGATGAGGAGAATAAGCAGTCAGAAAGCAAGGTTGAGCAGGTTGGTGCTGAATCAGCTGCTGATAAGGAGAATGTTGTGAAGGAGAACACTGAAGTTTCAAGTGAAGCAACGGAACCTGAGGTTGTACATGAACCAGCTGTGGGAGAAAATAAGACAAATGAGGGTGAGACTGAAAATGAGGAGAAGACTGAAAATGAAGATAACGAAGATAACAAAAACGAAAATGTAGATCCAAGTCCGGAAGGTACTTCTTTGAGCTCATTCCAACAGCTTTCGAGTAGTCAAAATGCCTTCACAAATCTTTCTGGAACTGGGTTTTCCACTTCCACCTTTTCCTTTGGGCTTATTTCAAAGGATGGTTCCACATTGGGTACTGGCTCTGGTTCTCTCTTTGGATCAAATAATGATCAGCCTTCTGGTCTTGGTCTCTCGAATAATGGAAATTCTTCAAAATTTGGTACATCAGGGGCTCCAGTTGTACCTAAGAGTGATGGTGGTGGTTTCCCACCAATGCAAGAGGTTGCGGTTGAGACTGGAGAAGAAAATGAGAAAGCGGTTTTCAATGCTGATGCTGCGTTATTTGAATTTATTGATGGAGGCTGGAAAGAACGTGGTAAGGGAGATCTGAAAGTCAATGTATCTGAATCTGGGACTGAAAAGGCGAGACTTGTTATGAGACTCAAGGGAATTAGAAAGGTAATTCTGAATGCTAGTCTGTACCCAGACATGAAGCTGACAAATATGGAGAAGAAAGGTGTAACATTTGCCTGCATGAACAGTATCGATGAAAAGAAGGATGGGCTTTCCACCTTTGCTTTGAAATTCAAGGATGGTTCTATAGTTGAGGAATTTTGCACTGCTGTTACAGCACATAAAGATAAAGGTAAGGCATCTACGGCTATGAAGACTCCTGAAAATTCTCCCAAGGCTTCTGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

416

Amino Acids

44.06

Weight (kDa)

4.67

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 292, 334
AccB7I CCANNNNNTGG 1 cut(s) 191
AccI GTMKAC 1 cut(s) 220
AccIII TCCGGA 1 cut(s) 544
AciI CCGC 4 cut(s) 5, 175, 830, 860
AclWI GGATC 2 cut(s) 530, 709
AcsI RAATTY 6 cut(s) 748, 758, 890, 1127, 1154, 1222
AcuI CTGAAG 2 cut(s) 282, 417
AfaI GTAC 6 cut(s) 432, 553, 679, 766, 786, 1025
AfiI CCNNNNNNNGG 4 cut(s) 191, 215, 242, 446
AgsI TTSAA 9 cut(s) 104, 124, 405, 657, 756, 868, 890, 1126, 1132
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 7 cut(s) 44, 272, 362, 443, 564, 577, 1039
AluI AGCT 7 cut(s) 44, 272, 362, 443, 564, 577, 1039
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 6 cut(s) 104, 467, 737, 830, 964, 976
AlwI GGATC 2 cut(s) 530, 709
AlwNI CAGNNNCTG 4 cut(s) 191, 257, 275, 365
Ama87I CYCGRG 1 cut(s) 63
Aor13HI TCCGGA 1 cut(s) 544
AoxI GGCC 2 cut(s) 76, 129
ApeKI GCWGC 6 cut(s) 44, 181, 272, 275, 362, 878
ApoI RAATTY 6 cut(s) 748, 758, 890, 1127, 1154, 1222
Asp700I GAANNNNTTC 1 cut(s) 751
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 129, 194
AsuHPI GGTGA 1 cut(s) 482
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 194
AxyI CCTNAGG 1 cut(s) 423
BanII GRGCYC 2 cut(s) 566, 778
BbsI GAAGAC 2 cut(s) 497, 1217
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 6 cut(s) 31, 193, 259, 262, 349, 865
BccI CCATC 5 cut(s) 656, 791, 893, 1097, 1130
BceAI ACGGC 1 cut(s) 1218
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 75
BclI TGATCA 1 cut(s) 712
BcoDI GTCTC 6 cut(s) 104, 467, 737, 830, 964, 976
BfaI CTAG 1 cut(s) 1017
BfmI CTRYAG 1 cut(s) 1143
BfuAI ACCTGC 2 cut(s) 292, 334
BglII AGATCT 1 cut(s) 928
BisI GCNGC 7 cut(s) 45, 175, 182, 273, 276, 363, 879
BlsI GCNGC 7 cut(s) 46, 176, 183, 274, 277, 364, 880
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 129, 194
BmiI GGNNCC 4 cut(s) 231, 420, 667, 777
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 4 cut(s) 85, 197, 865, 1205
BmuI ACTGGG 1 cut(s) 627
BpiI GAAGAC 2 cut(s) 497, 1217
BpmI CTGGAG 2 cut(s) 762, 861
BpuEI CTTGAG 1 cut(s) 971
Bsa29I ATCGAT 1 cut(s) 1089
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 2 cut(s) 73, 1230
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 215, 242, 446
Bse1I ACTGG 7 cut(s) 118, 132, 288, 622, 685, 779, 844
Bse21I CCTNAGG 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 544
BseBI CCWGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 1089
BseDI CCNNGG 2 cut(s) 73, 1230
BseGI GGATG 3 cut(s) 667, 1108, 1141
BseLI CCNNNNNNNGG 4 cut(s) 191, 215, 242, 446
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 7 cut(s) 118, 132, 288, 622, 685, 779, 844
BseRI GAGGAG 3 cut(s) 152, 326, 500
BseXI GCAGC 6 cut(s) 31, 193, 259, 262, 349, 865
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 2 cut(s) 78, 131
BshVI ATCGAT 1 cut(s) 1089
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 2 cut(s) 239, 970
BslI CCNNNNNNNGG 4 cut(s) 191, 215, 242, 446
BsmAI GTCTC 6 cut(s) 104, 467, 737, 830, 964, 976
BsmFI GGGAC 2 cut(s) 239, 970
BsmI GAATGC 1 cut(s) 1018
BsnI GGCC 2 cut(s) 78, 131
Bso31I GGTCTC 1 cut(s) 737
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 566, 778
Bsp13I TCCGGA 1 cut(s) 544
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 4 cut(s) 535, 701, 712, 928
BspACI CCGC 4 cut(s) 5, 175, 830, 860
BspANI GGCC 2 cut(s) 78, 131
BspCNI CTCAG 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 1089
BspEI TCCGGA 1 cut(s) 544
BspLI GGNNCC 4 cut(s) 231, 420, 667, 777
BspMI ACCTGC 2 cut(s) 292, 334
BspPI GGATC 2 cut(s) 530, 709
BspTNI GGTCTC 1 cut(s) 737
BsrGI TGTACA 1 cut(s) 430
BsrI ACTGG 7 cut(s) 118, 132, 288, 622, 685, 779, 844
BssECI CCNNGG 2 cut(s) 73, 1230
BssMI GATC 4 cut(s) 535, 701, 712, 928
BssNAI GTATAC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 1230
Bst1107I GTATAC 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 225, 1085
BstAPI GCANNNNNTGC 2 cut(s) 257, 284
BstAUI TGTACA 1 cut(s) 430
BstC8I GCNNGC 5 cut(s) 42, 147, 179, 186, 1075
BstDEI CTNAG 3 cut(s) 33, 423, 789
BstF5I GGATG 3 cut(s) 667, 1108, 1141
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 4 cut(s) 538, 704, 715, 931
BstMAI GTCTC 6 cut(s) 104, 467, 737, 830, 964, 976
BstMBI GATC 4 cut(s) 535, 701, 712, 928
BstMWI GCNNNNNNNGC 6 cut(s) 257, 284, 359, 878, 1172, 1202
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 1143
BstV1I GCAGC 6 cut(s) 31, 193, 259, 262, 349, 865
BstV2I GAAGAC 2 cut(s) 497, 1217
BstX2I RGATCY 2 cut(s) 535, 928
BstYI RGATCY 2 cut(s) 535, 928
BstZ17I GTATAC 1 cut(s) 221
Bsu15I ATCGAT 1 cut(s) 1089
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 2 cut(s) 78, 131
BsuTUI ATCGAT 1 cut(s) 1089
BtsCI GGATG 3 cut(s) 667, 1108, 1141
BtsI GCAGTG 1 cut(s) 1161
BtsIMutI CAGTG 4 cut(s) 139, 295, 393, 1161
BveI ACCTGC 2 cut(s) 292, 334
Cac8I GCNNGC 5 cut(s) 42, 147, 179, 186, 1075
CaiI CAGNNNCTG 4 cut(s) 191, 257, 275, 365
CfoI GCGC 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 129, 194
ClaI ATCGAT 1 cut(s) 1089
Csp6I GTAC 6 cut(s) 431, 552, 678, 765, 785, 1024
CviAII CATG 3 cut(s) 434, 1033, 1078
CviQI GTAC 6 cut(s) 431, 552, 678, 765, 785, 1024
DdeI CTNAG 3 cut(s) 33, 423, 789
DpnI GATC 4 cut(s) 537, 703, 714, 930
DpnII GATC 4 cut(s) 535, 701, 712, 928
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 1230
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 566, 778
Eco31I GGTCTC 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 564
Eco57I CTGAAG 2 cut(s) 282, 417
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 564
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 1230
EcoT38I GRGCYC 2 cut(s) 566, 778
ErhI CCWWGG 1 cut(s) 1230
FaeI CATG 3 cut(s) 437, 1036, 1081
FaiI YATR 9 cut(s) 221, 435, 980, 1034, 1049, 1079, 1145, 1179, 1208
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 2 cut(s) 239, 970
FatI CATG 3 cut(s) 433, 1032, 1077
FbaI TGATCA 1 cut(s) 712
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 7 cut(s) 45, 175, 182, 273, 276, 363, 879
FokI GGATG 3 cut(s) 674, 1115, 1148
FriOI GRGCYC 2 cut(s) 566, 778
Fsp4HI GCNGC 7 cut(s) 45, 175, 182, 273, 276, 363, 879
FspBI CTAG 1 cut(s) 1017
GlaI GCGC 1 cut(s) 250
GluI GCNGC 7 cut(s) 45, 175, 182, 273, 276, 363, 879
GsuI CTGGAG 2 cut(s) 762, 861
HaeIII GGCC 2 cut(s) 78, 131
HapII CCGG 1 cut(s) 545
HhaI GCGC 1 cut(s) 251
Hin1II CATG 3 cut(s) 437, 1036, 1081
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HinfI GANTC 5 cut(s) 8, 356, 950, 984, 1213
HpaII CCGG 1 cut(s) 545
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 7 cut(s) 13, 307, 328, 933, 949, 1011, 1240
Hpy188III TCNNGA 7 cut(s) 65, 101, 124, 545, 612, 736, 1217
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 9 cut(s) 32, 39, 45, 236, 379, 542, 607, 729, 1093
HpyCH4III ACNGT 2 cut(s) 225, 1085
HpyCH4IV ACGT 1 cut(s) 916
HpyCH4V TGCA 4 cut(s) 278, 820, 1077, 1161
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 284, 359, 878, 1172, 1202
HpyF3I CTNAG 3 cut(s) 33, 423, 789
HpySE526I ACGT 1 cut(s) 916
Hsp92II CATG 3 cut(s) 437, 1036, 1081
HspAI GCGC 1 cut(s) 249
Kpn2I TCCGGA 1 cut(s) 544
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 4 cut(s) 535, 701, 712, 928
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 6 cut(s) 31, 193, 259, 262, 349, 865
LweI GCATC 4 cut(s) 85, 197, 865, 1205
MaeI CTAG 1 cut(s) 1017
MaeII ACGT 1 cut(s) 916
MaeIII GTNAC 3 cut(s) 265, 1063, 1168
MalI GATC 4 cut(s) 537, 703, 714, 930
MboI GATC 4 cut(s) 535, 701, 712, 928
MflI RGATCY 2 cut(s) 535, 928
MhlI GDGCHC 2 cut(s) 566, 778
MluCI AATT 9 cut(s) 159, 748, 758, 890, 993, 1005, 1127, 1154, 1222
MlyI GAGTC 2 cut(s) 978, 1207
MmeI TCCRAC 2 cut(s) 260, 595
MroI TCCGGA 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 751
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 3 cut(s) 272, 362, 443
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 1018
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 6 cut(s) 257, 284, 359, 878, 1172, 1202
NdeII GATC 4 cut(s) 535, 701, 712, 928
NlaIII CATG 3 cut(s) 437, 1036, 1081
NlaIV GGNNCC 4 cut(s) 231, 420, 667, 777
PceI AGGCCT 1 cut(s) 78
PctI GAATGC 1 cut(s) 1018
PdmI GAANNNNTTC 1 cut(s) 751
PfeI GAWTC 3 cut(s) 8, 356, 950
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 7 cut(s) 46, 176, 183, 274, 277, 364, 880
PleI GAGTC 2 cut(s) 978, 1207
PpsI GAGTC 2 cut(s) 978, 1207
Psp124BI GAGCTC 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 231, 420, 667, 777
PspPI GGNCC 2 cut(s) 129, 194
PstNI CAGNNNCTG 4 cut(s) 191, 257, 275, 365
PsuI RGATCY 2 cut(s) 535, 928
PvuII CAGCTG 3 cut(s) 272, 362, 443
RsaI GTAC 6 cut(s) 432, 553, 679, 766, 786, 1025
RsaNI GTAC 6 cut(s) 431, 552, 678, 765, 785, 1024
SacI GAGCTC 1 cut(s) 566
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 7 cut(s) 45, 175, 182, 273, 276, 363, 879
Sau3AI GATC 4 cut(s) 535, 701, 712, 928
Sau96I GGNCC 2 cut(s) 129, 194
SchI GAGTC 2 cut(s) 978, 1207
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 2 cut(s) 566, 778
SfaNI GCATC 4 cut(s) 85, 197, 865, 1205
SfcI CTRYAG 1 cut(s) 1143
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 986
SmoI CTYRAG 1 cut(s) 986
Sse9I AATT 9 cut(s) 159, 748, 758, 890, 993, 1005, 1127, 1154, 1222
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 4 cut(s) 5, 175, 830, 860
SspMI CTAG 1 cut(s) 1017
SstI GAGCTC 1 cut(s) 566
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 1230
TaaI ACNGT 2 cut(s) 225, 1085
TaiI ACGT 1 cut(s) 919
TaqI TCGA 3 cut(s) 581, 737, 1089
TasI AATT 9 cut(s) 159, 748, 758, 890, 993, 1005, 1127, 1154, 1222
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 3 cut(s) 8, 356, 950
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 4 cut(s) 139, 295, 400, 1168
TseI GCWGC 6 cut(s) 44, 181, 272, 275, 362, 878
TspDTI ATGAA 6 cut(s) 450, 516, 1049, 1094, 1107, 1223
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 4 cut(s) 139, 295, 400, 1168
Van91I CCANNNNNTGG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 6 cut(s) 748, 758, 890, 1127, 1154, 1222
XmiI GTMKAC 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 751
XspI CTAG 1 cut(s) 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.