MD17G1196800.v1.1

NUP50 (Nucleoporin 50 kDa)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
23575668 .. 23578205
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1196800.v1.1.491

Sequence Viewer

Length: 1293 bp
ATGTCAATGGCGGATTCGGAAAATGCCCTTCCACTTAATAAGAAGCGAGCTGCTGGGAGGGAACTGTCTCGGGATAACCCAGGCCTTGATGACGAGGACGATGCTTCTGATGCAGAGATTGGAACTTTCAAGAGGGCCAGTGAGGAGGTACTGGCCACCAGAAGAATTGTGAAGGTTCGTCGCCAGCAGTGTACATCTGCCCCCGCATCTAATACTTCCAATCCTTTTGCTGGTATACGCTTGGTTCCTCCAACAGGAGCAACTGCAGCCCCTGCTGCAGCTAGCGCACCACCTGCCAGTGAGACACGAGTTTCAGATGAGGATAATAAGCAGCCAGAAAGCAAGGTTGAACAGGCTGATCAAGCTGGGGATGACTCTGCTGCAGATAAGGAGAATGTTGCGAAGGAGAACAATGAAGTTTCCAGTGAGGCAACGGAACAACCTGAACCAGCTGTGGGTGAAAATAAGACAAATGAGGGTGATGCAGTAAATGAGGAAGAGGAAAATGCCGAAATTGAAGATAAGAAAGATAACGAAGATAAGAAAGATGGAGAAGATAAGAAAGATAACAAAAACGAAAATGTTGATCCAAGTCCGGAAGGTAACTCATTGAGCTCATTCCAACAGCTTTCGAGTAGCCAAAATGCCTTCACAAATATCTCTGGAACTGGGTTCTCCACGTCCAGTTTTTCATTTGGGCTTATTTCAAAGGATGGGTCTGCATTGGGTACTGGCTCTGGTTCACTTTTTGGATCAAACAATGATCAGCCTTCTGGTCTTGGTCTCTCGCGTAATGGAAGTTCTTCACTCTTTGGCACATCAGGGCCCTCAGTTGTACCTAAGAGTGATGGTGGTGCCTTCCCTCCATTGCAAGAGATTTCAGTTGAGACTGGGGAAGAAAATGAGAAAGTGGTTTTCACTGCTGATGCTGCGTTGTTTGAATTTATTGATGGAGGCTGGAAGGAACGTGGAAAGGGAGATCTGAAAGTTAATGTATCTGAATCTGAGAAAGCCAGACTTGTTATGAGACTCAAGGGAATTAGGAAGGTAATTCTGAATGCAAGCCTTTACCCAGACATGAAGCTCACGAACATGGAGAAGAAAGGTGTAACATTTGCCTGCATGAACAGTATTGATGAAAAGAAGGATGGGCTTTCCACCTTTGCTTTGAAGTTCAAGGATGGTTCCATAGTCGAGGAATTTCGTGCTGCTGTTACAGCACATAAAGATAAAGGTAAGGCATTTACAGCTATGAAGACTCCTGAAAATTCTCCCAAGGCATCTGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

45.68

Weight (kDa)

4.69

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUP50 PF08911 14 - 79 1.9e-16 NUP50 (Nucleoporin 50 kDa)
Ran_BP1 PF00638 295 - 406 2.3e-19 RanBP1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 301
Acc36I ACCTGC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 854
AccI GTMKAC 1 cut(s) 235
AccII CGCG 1 cut(s) 790
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 2 cut(s) 11, 204
AclWI GGATC 2 cut(s) 581, 760
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 3 cut(s) 941, 1199, 1267
AfaI GTAC 4 cut(s) 150, 193, 730, 837
AfiI CCNNNNNNNGG 3 cut(s) 230, 254, 455
AgsI TTSAA 7 cut(s) 130, 350, 518, 708, 941, 1171, 1177
AjiI CACGTC 1 cut(s) 681
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 8 cut(s) 50, 281, 365, 452, 615, 628, 1084, 1250
AluI AGCT 8 cut(s) 50, 281, 365, 452, 615, 628, 1084, 1250
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 5 cut(s) 72, 296, 788, 881, 1021
AlwI GGATC 2 cut(s) 581, 760
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 595
AoxI GGCC 4 cut(s) 82, 135, 153, 824
ApaI GGGCCC 1 cut(s) 828
ApeKI GCWGC 8 cut(s) 50, 266, 275, 278, 331, 380, 929, 1208
ApoI RAATTY 3 cut(s) 941, 1199, 1267
ArsI GACNNNNNNTTYG 2 cut(s) 701, 733
Asp700I GAANNNNTTC 1 cut(s) 802
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 3 cut(s) 135, 824, 825
AsuHPI GGTGA 2 cut(s) 470, 491
AsuNHI GCTAGC 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 69
BaeGI GKGCMC 1 cut(s) 828
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 2 cut(s) 617, 828
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 1262
Bbv12I GWGCWC 1 cut(s) 617
BbvI GCAGC 8 cut(s) 37, 262, 278, 290, 343, 367, 916, 1195
BccI CCATC 6 cut(s) 542, 707, 842, 944, 1142, 1175
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 2 cut(s) 358, 763
BcoDI GTCTC 5 cut(s) 72, 296, 788, 881, 1021
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 3 cut(s) 264, 276, 381
BfuAI ACCTGC 1 cut(s) 301
BglII AGATCT 1 cut(s) 979
BisI GCNGC 8 cut(s) 51, 267, 276, 279, 332, 381, 930, 1209
BlsI GCNGC 8 cut(s) 52, 268, 277, 280, 333, 382, 931, 1210
Bme1390I CCNGG 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 69
BmgBI CACGTC 1 cut(s) 681
BmgT120I GGNCC 3 cut(s) 135, 824, 825
BmiI GGNNCC 4 cut(s) 246, 826, 856, 1186
BmrFI CCNGG 1 cut(s) 81
BmrI ACTGGG 2 cut(s) 678, 900
BmsI GCATC 6 cut(s) 91, 100, 215, 472, 916, 1289
BmtI GCTAGC 1 cut(s) 285
BmuI ACTGGG 2 cut(s) 678, 900
BpiI GAAGAC 1 cut(s) 1262
BpuEI CTTGAG 1 cut(s) 1016
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 2 cut(s) 79, 1275
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 254, 455
Bse1I ACTGG 8 cut(s) 138, 156, 297, 423, 673, 684, 736, 895
Bse3DI GCAATG 1 cut(s) 866
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 79, 1275
BseGI GGATG 4 cut(s) 376, 718, 1153, 1186
BseLI CCNNNNNNNGG 3 cut(s) 230, 254, 455
BseMI GCAATG 1 cut(s) 866
BseMII CTCAG 2 cut(s) 843, 996
BseNI ACTGG 8 cut(s) 138, 156, 297, 423, 673, 684, 736, 895
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 828
BseXI GCAGC 8 cut(s) 37, 262, 278, 290, 343, 367, 916, 1195
BseYI CCCAGC 2 cut(s) 53, 365
Bsh1236I CGCG 1 cut(s) 790
BshFI GGCC 4 cut(s) 84, 137, 155, 826
BshNI GGYRCC 1 cut(s) 854
BsiHKAI GWGCWC 1 cut(s) 617
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 596
BslI CCNNNNNNNGG 3 cut(s) 230, 254, 455
BsmAI GTCTC 5 cut(s) 72, 296, 788, 881, 1021
BsmI GAATGC 1 cut(s) 1063
BsnI GGCC 4 cut(s) 84, 137, 155, 826
Bso31I GGTCTC 1 cut(s) 788
BsoBI CYCGRG 1 cut(s) 69
Bsp120I GGGCCC 1 cut(s) 824
Bsp1286I GDGCHC 2 cut(s) 617, 828
Bsp13I TCCGGA 1 cut(s) 595
Bsp1407I TGTACA 1 cut(s) 191
Bsp143I GATC 5 cut(s) 358, 586, 752, 763, 979
BspACI CCGC 2 cut(s) 11, 204
BspANI GGCC 4 cut(s) 84, 137, 155, 826
BspCNI CTCAG 2 cut(s) 842, 997
BspEI TCCGGA 1 cut(s) 595
BspFNI CGCG 1 cut(s) 790
BspLI GGNNCC 4 cut(s) 246, 826, 856, 1186
BspMAI CTGCAG 3 cut(s) 268, 280, 385
BspMI ACCTGC 1 cut(s) 301
BspOI GCTAGC 1 cut(s) 285
BspPI GGATC 2 cut(s) 581, 760
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 866
BsrGI TGTACA 1 cut(s) 191
BsrI ACTGG 8 cut(s) 138, 156, 297, 423, 673, 684, 736, 895
BssECI CCNNGG 2 cut(s) 79, 1275
BssMI GATC 5 cut(s) 358, 586, 752, 763, 979
BssNAI GTATAC 1 cut(s) 236
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 1275
Bst1107I GTATAC 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 66, 1130
Bst6I CTCTTC 1 cut(s) 492
BstAPI GCANNNNNTGC 2 cut(s) 272, 293
BstAUI TGTACA 1 cut(s) 191
BstC8I GCNNGC 5 cut(s) 48, 185, 283, 1063, 1120
BstDEI CTNAG 3 cut(s) 829, 840, 1005
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 4 cut(s) 376, 718, 1153, 1186
BstFNI CGCG 1 cut(s) 790
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 5 cut(s) 361, 589, 755, 766, 982
BstMAI GTCTC 5 cut(s) 72, 296, 788, 881, 1021
BstMBI GATC 5 cut(s) 358, 586, 752, 763, 979
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 3 cut(s) 264, 276, 381
BstSLI GKGCMC 1 cut(s) 828
BstUI CGCG 1 cut(s) 790
BstV1I GCAGC 8 cut(s) 37, 262, 278, 290, 343, 367, 916, 1195
BstV2I GAAGAC 1 cut(s) 1262
BstX2I RGATCY 1 cut(s) 979
BstYI RGATCY 1 cut(s) 979
BstZ17I GTATAC 1 cut(s) 236
BsuRI GGCC 4 cut(s) 84, 137, 155, 826
BtrI CACGTC 1 cut(s) 681
BtsCI GGATG 4 cut(s) 376, 718, 1153, 1186
BtsI GCAGTG 2 cut(s) 194, 918
BtsIMutI CAGTG 5 cut(s) 145, 194, 304, 430, 918
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 5 cut(s) 48, 185, 283, 1063, 1120
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 3 cut(s) 135, 824, 825
Csp6I GTAC 4 cut(s) 149, 192, 729, 836
CviAII CATG 3 cut(s) 1078, 1093, 1123
CviQI GTAC 4 cut(s) 149, 192, 729, 836
DdeI CTNAG 3 cut(s) 829, 840, 1005
DpnI GATC 5 cut(s) 360, 588, 754, 765, 981
DpnII GATC 5 cut(s) 358, 586, 752, 763, 979
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
EciI GGCGGA 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 1275
Eco147I AGGCCT 1 cut(s) 84
Eco24I GRGCYC 2 cut(s) 617, 828
Eco31I GGTCTC 1 cut(s) 788
Eco53kI GAGCTC 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 615
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoO109I RGGNCCY 2 cut(s) 824, 825
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 1275
EcoT38I GRGCYC 2 cut(s) 617, 828
ErhI CCWWGG 1 cut(s) 1275
FaeI CATG 3 cut(s) 1081, 1096, 1126
FaiI YATR 8 cut(s) 236, 1025, 1079, 1094, 1124, 1190, 1224, 1253
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FatI CATG 3 cut(s) 1077, 1092, 1122
FauI CCCGC 1 cut(s) 211
FbaI TGATCA 2 cut(s) 358, 763
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 8 cut(s) 51, 267, 276, 279, 332, 381, 930, 1209
FokI GGATG 4 cut(s) 383, 725, 1160, 1193
FriOI GRGCYC 2 cut(s) 617, 828
Fsp4HI GCNGC 8 cut(s) 51, 267, 276, 279, 332, 381, 930, 1209
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 286
GluI GCNGC 8 cut(s) 51, 267, 276, 279, 332, 381, 930, 1209
GsaI CCCAGC 2 cut(s) 57, 369
HaeIII GGCC 4 cut(s) 84, 137, 155, 826
HapII CCGG 1 cut(s) 596
HhaI GCGC 1 cut(s) 287
Hin1II CATG 3 cut(s) 1081, 1096, 1126
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 5 cut(s) 14, 374, 1001, 1029, 1258
HpaII CCGG 1 cut(s) 596
HphI GGTGA 2 cut(s) 470, 491
Hpy166II GTNNAC 3 cut(s) 192, 236, 743
Hpy188I TCNGA 8 cut(s) 19, 109, 316, 984, 1000, 1006, 1056, 1285
Hpy188III TCNNGA 6 cut(s) 71, 130, 596, 663, 1087, 1262
Hpy8I GTNNAC 3 cut(s) 192, 236, 743
Hpy99I CGWCG 1 cut(s) 183
HpyCH4III ACNGT 2 cut(s) 66, 1130
HpyCH4IV ACGT 2 cut(s) 680, 967
HpyCH4V TGCA 9 cut(s) 113, 266, 278, 383, 485, 722, 871, 1061, 1122
HpyF3I CTNAG 3 cut(s) 829, 840, 1005
HpySE526I ACGT 2 cut(s) 680, 967
Hsp92II CATG 3 cut(s) 1081, 1096, 1126
HspAI GCGC 1 cut(s) 285
Kpn2I TCCGGA 1 cut(s) 595
Ksp22I TGATCA 2 cut(s) 358, 763
Kzo9I GATC 5 cut(s) 358, 586, 752, 763, 979
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 8 cut(s) 37, 262, 278, 290, 343, 367, 916, 1195
LweI GCATC 6 cut(s) 91, 100, 215, 472, 916, 1289
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 680, 967
MaeIII GTNAC 3 cut(s) 602, 1108, 1213
MalI GATC 5 cut(s) 360, 588, 754, 765, 981
MboI GATC 5 cut(s) 358, 586, 752, 763, 979
MboII GAAGA 9 cut(s) 174, 509, 530, 548, 566, 795, 908, 1111, 1267
MflI RGATCY 1 cut(s) 979
MhlI GDGCHC 2 cut(s) 617, 828
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 7 cut(s) 165, 513, 941, 1038, 1050, 1199, 1267
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 3 cut(s) 368, 1023, 1252
MmeI TCCRAC 2 cut(s) 275, 646
Mox20I TGGCCA 1 cut(s) 155
MroI TCCGGA 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 802
MscI TGGCCA 1 cut(s) 155
MseI TTAA 3 cut(s) 36, 990, 1291
MslI CAYNNNNRTG 1 cut(s) 1091
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 1063
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 790
NdeII GATC 5 cut(s) 358, 586, 752, 763, 979
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 3 cut(s) 1081, 1096, 1126
NlaIV GGNNCC 4 cut(s) 246, 826, 856, 1186
PaqCI CACCTGC 1 cut(s) 301
PceI AGGCCT 1 cut(s) 84
PctI GAATGC 1 cut(s) 1063
PdmI GAANNNNTTC 1 cut(s) 802
PfeI GAWTC 2 cut(s) 14, 1001
PkrI GCNGC 8 cut(s) 52, 268, 277, 280, 333, 382, 931, 1210
PleI GAGTC 3 cut(s) 368, 1023, 1252
PpsI GAGTC 3 cut(s) 368, 1023, 1252
Psp124BI GAGCTC 1 cut(s) 617
Psp6I CCWGG 1 cut(s) 79
PspFI CCCAGC 2 cut(s) 53, 365
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 4 cut(s) 246, 826, 856, 1186
PspOMI GGGCCC 1 cut(s) 824
PspPI GGNCC 3 cut(s) 135, 824, 825
PsrI GAACNNNNNNTAC 2 cut(s) 784, 816
PstI CTGCAG 3 cut(s) 268, 280, 385
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 979
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 4 cut(s) 150, 193, 730, 837
RsaNI GTAC 4 cut(s) 149, 192, 729, 836
RseI CAYNNNNRTG 1 cut(s) 1091
SacI GAGCTC 1 cut(s) 617
SaqAI TTAA 3 cut(s) 36, 990, 1291
SatI GCNGC 8 cut(s) 51, 267, 276, 279, 332, 381, 930, 1209
Sau3AI GATC 5 cut(s) 358, 586, 752, 763, 979
Sau96I GGNCC 3 cut(s) 135, 824, 825
SchI GAGTC 3 cut(s) 368, 1023, 1252
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 617, 828
SfaNI GCATC 6 cut(s) 91, 100, 215, 472, 916, 1289
SfcI CTRYAG 3 cut(s) 264, 276, 381
SmiMI CAYNNNNRTG 1 cut(s) 1091
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
Sse9I AATT 7 cut(s) 165, 513, 941, 1038, 1050, 1199, 1267
SseBI AGGCCT 1 cut(s) 84
SsiI CCGC 2 cut(s) 11, 204
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 617
StuI AGGCCT 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 1275
TaaI ACNGT 2 cut(s) 66, 1130
TaiI ACGT 2 cut(s) 683, 970
TaqI TCGA 2 cut(s) 632, 1194
TasI AATT 7 cut(s) 165, 513, 941, 1038, 1050, 1199, 1267
TatI WGTACW 1 cut(s) 191
TfiI GAWTC 2 cut(s) 14, 1001
Tru1I TTAA 3 cut(s) 36, 990, 1291
Tru9I TTAA 3 cut(s) 36, 990, 1291
TscAI CASTG 5 cut(s) 145, 194, 304, 430, 925
TseI GCWGC 8 cut(s) 50, 266, 275, 278, 331, 380, 929, 1208
TspDTI ATGAA 6 cut(s) 429, 681, 1094, 1139, 1152, 1268
TspGWI ACGGA 1 cut(s) 449
TspRI CASTG 5 cut(s) 145, 194, 304, 430, 925
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 3 cut(s) 941, 1199, 1267
XmiI GTMKAC 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 802
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.