FvH4_6g31000

NUP50 (Nucleoporin 50 kDa)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
24186093 .. 24189672
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31000.t1

Sequence Viewer

Length: 1305 bp
ATGGCGGATTCGGAAAATGCCCTTCCATCTTCTAAGAAACGTGCTGCAGGAAGGGAACTGTCTCGTGATAATCCAGGTCTTGATGATGAGGAGGATGATTCTGACCTAGAGGCTGGAACTTTCAAGAGGGCCAGTGAAGAAGTGCTAGCAACAAGAAAGATTGTTAAGGTTCGTCGCCCTCCGGCAACTTCAGCTCCTACTTCCAACCCTTTTGCTGGGATGCGCTTGGTTCCTCAATCTGAAGCTAGTGCAGACCCTTCTCAAGTCGCCGCTGATGCACAACCTGCTAGTGATGCAAGAATTCTAGATGGAGCTAATCAGGAGTTTGACAAATCTGCTGGAGATAAGGAGAGTGATGTGAAGGAGGAAGACAAAGTTCCCAGTGAGGCAACAGAGCCTGGTGTAGCACATGATCATACTGAAGCTGAATCTGCTGCAGATAAGGAGAACATTGTGAAGGAAAACAACAATATATCTGGGGAACCAGCTGTTGGAGAAGATAAGGCTAAAAATGACTGTGAGGCTGTAAACGAGGTAAAGACTGTAATTGATGGTGAGACTGGAAATGGTGAGAAGGCTGAAAATGAAGAGAAGAGAGAGAAGAAAGATGAAACTGTGGAACCAAGTGCTGAAGGTGCCACTTTGAACTCATTTCAGCAGCTTTCGAGTAGTCAAAATGCCTTCACAAATCTTTCTGGAACTGGGTTTTCCACTTCCACCTTTTCTTTTGGGCTTATTTCGAAGGATGGGTCTGCATTGAGTACTGGCTCTGGTTCACTTTTCGGGTCAAAAAGTGATTTCTCTTCTGGTCTCGGTCTATCTAATAATGGAAGTTCATCACTCTTTGCCACAACAGGGCCTTCAATTGTCCCCAGGGGTGACATCCCTTCAATGCAAGAGGTTGCAGTTGAGACTGGAGAAGAAAATGAGAAAGCGGTTTTCACTGCTGATGCGGTGCTGTTTGAATTTATCGACGGAGGCTGGAAAGAGCGTGGAAAGGGGGATCTGAAGGTAAATGTATCTGATTCTGGGGCTGACAAAGCCAGACTAGTTATGAGAGCCAAAGGAATTAGGAAGGTAATTTTGAATGCAAGTCTTTACCCAGACATGAAGCTGGCAAATATGGAGAAGAAAGGTGTTACGTTTGCCTGCATGAATAGTATTGATGAAAAGAAGGATGGGTTATCCACATTTGCGTTGAAGTTCAAGGATGGGTCCATAGTTGAGGAATTTCGTTCTGCTGTTACAGAGCACAAAGGCAAGACAGCTACCGTTATGAAGACTCCTGAAAACTCCCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

435

Amino Acids

46.01

Weight (kDa)

4.75

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUP50 PF08911 12 - 74 1.3e-16 NUP50 (Nucleoporin 50 kDa)
Ran_BP1 PF00638 303 - 419 1.2e-19 RanBP1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 635
AccB7I CCANNNNNTGG 1 cut(s) 491
AciI CCGC 4 cut(s) 5, 270, 935, 953
AclWI GGATC 1 cut(s) 1011
AcsI RAATTY 3 cut(s) 300, 965, 1229
AcuI CTGAAG 5 cut(s) 174, 261, 441, 651, 1028
AfaI GTAC 1 cut(s) 763
AfiI CCNNNNNNNGG 3 cut(s) 215, 491, 855
AgsI TTSAA 8 cut(s) 124, 646, 864, 891, 965, 1087, 1201, 1207
AhlI ACTAGT 1 cut(s) 1048
AjnI CCWGG 3 cut(s) 73, 397, 872
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AluBI AGCT 8 cut(s) 194, 245, 314, 425, 488, 661, 1114, 1268
AluI AGCT 8 cut(s) 194, 245, 314, 425, 488, 661, 1114, 1268
Alw21I GWGCWC 1 cut(s) 1254
Alw26I GTCTC 4 cut(s) 66, 551, 815, 905
AlwI GGATC 1 cut(s) 1011
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 2 cut(s) 129, 857
ApeKI GCWGC 3 cut(s) 44, 434, 658
ApoI RAATTY 3 cut(s) 300, 965, 1229
ArsI GACNNNNNNTTYG 2 cut(s) 734, 766
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 3 cut(s) 129, 857, 1215
AsuHPI GGTGA 3 cut(s) 566, 581, 890
AsuII TTCGAA 1 cut(s) 740
AsuNHI GCTAGC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 1215
BanI GGYRCC 1 cut(s) 635
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 2 cut(s) 375, 1286
Bbv12I GWGCWC 1 cut(s) 1254
BbvI GCAGC 3 cut(s) 31, 421, 670
BccI CCATC 6 cut(s) 34, 302, 545, 740, 1172, 1205
BciT130I CCWGG 3 cut(s) 75, 399, 874
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 4 cut(s) 66, 551, 815, 905
BcuI ACTAGT 1 cut(s) 1048
BfaI CTAG 6 cut(s) 107, 146, 246, 288, 305, 1049
BfmI CTRYAG 2 cut(s) 45, 435
BfuAI ACCTGC 1 cut(s) 292
BisI GCNGC 4 cut(s) 45, 270, 435, 659
BlsI GCNGC 4 cut(s) 46, 271, 436, 660
BmcAI AGTACT 1 cut(s) 763
Bme1390I CCNGG 3 cut(s) 75, 399, 874
Bme18I GGWCC 1 cut(s) 1215
BmgT120I GGNCC 3 cut(s) 129, 857, 1215
BmiI GGNNCC 5 cut(s) 231, 483, 621, 637, 1216
BmrFI CCNGG 3 cut(s) 75, 399, 874
BmrI ACTGGG 2 cut(s) 375, 711
BmsI GCATC 4 cut(s) 210, 265, 283, 940
BmtI GCTAGC 1 cut(s) 149
BmuI ACTGGG 2 cut(s) 375, 711
BpiI GAAGAC 2 cut(s) 375, 1286
BpmI CTGGAG 2 cut(s) 360, 936
Bpu14I TTCGAA 1 cut(s) 740
BpuEI CTTGAG 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 815
BsaJI CCNNGG 2 cut(s) 872, 873
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 491, 855
Bse1I ACTGG 6 cut(s) 132, 381, 565, 706, 769, 919
BseBI CCWGG 3 cut(s) 75, 399, 874
BseDI CCNNGG 2 cut(s) 872, 873
BseGI GGATG 6 cut(s) 100, 225, 751, 882, 1183, 1216
BseLI CCNNNNNNNGG 3 cut(s) 215, 491, 855
BseNI ACTGG 6 cut(s) 132, 381, 565, 706, 769, 919
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 31, 421, 670
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 2 cut(s) 131, 859
BshNI GGYRCC 1 cut(s) 635
BsiHKAI GWGCWC 1 cut(s) 1254
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 854
BslI CCNNNNNNNGG 3 cut(s) 215, 491, 855
BsmAI GTCTC 4 cut(s) 66, 551, 815, 905
BsmFI GGGAC 1 cut(s) 854
BsmI GAATGC 1 cut(s) 1093
BsnI GGCC 2 cut(s) 131, 859
Bso31I GGTCTC 1 cut(s) 815
Bsp119I TTCGAA 1 cut(s) 740
Bsp1286I GDGCHC 1 cut(s) 1254
Bsp143I GATC 2 cut(s) 412, 1003
BspACI CCGC 4 cut(s) 5, 270, 935, 953
BspANI GGCC 2 cut(s) 131, 859
BspLI GGNNCC 5 cut(s) 231, 483, 621, 637, 1216
BspMAI CTGCAG 2 cut(s) 49, 439
BspMI ACCTGC 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 149
BspPI GGATC 1 cut(s) 1011
BspT104I TTCGAA 1 cut(s) 740
BspT107I GGYRCC 1 cut(s) 635
BspTNI GGTCTC 1 cut(s) 815
BsrI ACTGG 6 cut(s) 132, 381, 565, 706, 769, 919
BssECI CCNNGG 2 cut(s) 872, 873
BssMI GATC 2 cut(s) 412, 1003
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 3 cut(s) 75, 399, 874
Bst4CI ACNGT 5 cut(s) 60, 518, 544, 616, 1273
Bst6I CTCTTC 3 cut(s) 582, 587, 808
BstAPI GCANNNNNTGC 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 740
BstC8I GCNNGC 3 cut(s) 147, 1116, 1150
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 6 cut(s) 100, 225, 751, 882, 1183, 1216
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 2 cut(s) 415, 1006
BstMAI GTCTC 4 cut(s) 66, 551, 815, 905
BstMBI GATC 2 cut(s) 412, 1003
BstMWI GCNNNNNNNGC 7 cut(s) 191, 275, 284, 293, 431, 635, 1040
BstNI CCWGG 3 cut(s) 75, 399, 874
BstSCI CCNGG 3 cut(s) 73, 397, 872
BstSFI CTRYAG 2 cut(s) 45, 435
BstV1I GCAGC 3 cut(s) 31, 421, 670
BstV2I GAAGAC 2 cut(s) 375, 1286
BstX2I RGATCY 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 1003
BsuRI GGCC 2 cut(s) 131, 859
BtsCI GGATG 6 cut(s) 100, 225, 751, 882, 1183, 1216
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 3 cut(s) 139, 388, 942
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 147, 1116, 1150
CaiI CAGNNNCTG 1 cut(s) 398
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 3 cut(s) 129, 857, 1215
Csp6I GTAC 1 cut(s) 762
CviAII CATG 3 cut(s) 410, 1108, 1153
CviQI GTAC 1 cut(s) 762
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 414, 1005
DpnII GATC 2 cut(s) 412, 1003
Eam1104I CTCTTC 3 cut(s) 582, 587, 808
EarI CTCTTC 3 cut(s) 582, 587, 808
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 815
Eco47I GGWCC 1 cut(s) 1215
Eco57I CTGAAG 5 cut(s) 174, 261, 441, 651, 1028
EcoO109I RGGNCCY 1 cut(s) 857
EcoRI GAATTC 1 cut(s) 300
EcoRII CCWGG 3 cut(s) 73, 397, 872
FaeI CATG 3 cut(s) 413, 1111, 1156
FaiI YATR 9 cut(s) 411, 417, 473, 1055, 1109, 1124, 1154, 1220, 1277
FaqI GGGAC 1 cut(s) 854
FatI CATG 3 cut(s) 409, 1107, 1152
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 45, 270, 435, 659
FokI GGATG 6 cut(s) 107, 232, 758, 869, 1190, 1223
Fsp4HI GCNGC 4 cut(s) 45, 270, 435, 659
FspBI CTAG 6 cut(s) 107, 146, 246, 288, 305, 1049
GlaI GCGC 1 cut(s) 224
GluI GCNGC 4 cut(s) 45, 270, 435, 659
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 2 cut(s) 360, 936
HaeIII GGCC 2 cut(s) 131, 859
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 413, 1111, 1156
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 5 cut(s) 8, 98, 428, 1025, 1282
HpaII CCGG 1 cut(s) 182
HphI GGTGA 3 cut(s) 566, 581, 890
Hpy166II GTNNAC 2 cut(s) 529, 776
Hpy188I TCNGA 5 cut(s) 13, 103, 241, 1008, 1024
Hpy188III TCNNGA 7 cut(s) 65, 80, 124, 305, 320, 696, 1286
Hpy8I GTNNAC 2 cut(s) 529, 776
Hpy99I CGWCG 2 cut(s) 177, 977
HpyCH4III ACNGT 5 cut(s) 60, 518, 544, 616, 1273
HpyCH4IV ACGT 2 cut(s) 40, 1142
HpyF10VI GCNNNNNNNGC 7 cut(s) 191, 275, 284, 293, 431, 635, 1040
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 2 cut(s) 40, 1142
Hsp92II CATG 3 cut(s) 413, 1111, 1156
HspAI GCGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 2 cut(s) 412, 1003
LmnI GCTCC 2 cut(s) 199, 311
Lsp1109I GCAGC 3 cut(s) 31, 421, 670
LweI GCATC 4 cut(s) 210, 265, 283, 940
MaeI CTAG 6 cut(s) 107, 146, 246, 288, 305, 1049
MaeII ACGT 2 cut(s) 40, 1142
MaeIII GTNAC 3 cut(s) 878, 1138, 1243
MalI GATC 2 cut(s) 414, 1005
MboI GATC 2 cut(s) 412, 1003
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 1 cut(s) 1003
MhlI GDGCHC 1 cut(s) 1254
MluCI AATT 7 cut(s) 300, 546, 864, 965, 1068, 1080, 1229
MlyI GAGTC 1 cut(s) 1276
MmeI TCCRAC 2 cut(s) 228, 472
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 272, 488
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 3 cut(s) 75, 399, 874
MunI CAATTG 1 cut(s) 864
Mva1269I GAATGC 1 cut(s) 1093
MvaI CCWGG 3 cut(s) 75, 399, 874
MwoI GCNNNNNNNGC 7 cut(s) 191, 275, 284, 293, 431, 635, 1040
NdeII GATC 2 cut(s) 412, 1003
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 3 cut(s) 413, 1111, 1156
NlaIV GGNNCC 5 cut(s) 231, 483, 621, 637, 1216
NmuCI GTSAC 1 cut(s) 878
NspV TTCGAA 1 cut(s) 740
PasI CCCWGGG 1 cut(s) 873
PctI GAATGC 1 cut(s) 1093
PfeI GAWTC 4 cut(s) 8, 98, 428, 1025
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 4 cut(s) 46, 271, 436, 660
PleI GAGTC 1 cut(s) 1276
PpsI GAGTC 1 cut(s) 1276
Psp6I CCWGG 3 cut(s) 73, 397, 872
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 3 cut(s) 73, 397, 872
PspN4I GGNNCC 5 cut(s) 231, 483, 621, 637, 1216
PspPI GGNCC 3 cut(s) 129, 857, 1215
PstI CTGCAG 2 cut(s) 49, 439
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 1003
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 763
RsaNI GTAC 1 cut(s) 762
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 4 cut(s) 45, 270, 435, 659
Sau3AI GATC 2 cut(s) 412, 1003
Sau96I GGNCC 3 cut(s) 129, 857, 1215
ScaI AGTACT 1 cut(s) 763
SchI GAGTC 1 cut(s) 1276
ScrFI CCNGG 3 cut(s) 75, 399, 874
SduI GDGCHC 1 cut(s) 1254
SfaNI GCATC 4 cut(s) 210, 265, 283, 940
SfcI CTRYAG 2 cut(s) 45, 435
SfuI TTCGAA 1 cut(s) 740
SinI GGWCC 1 cut(s) 1215
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SpeI ACTAGT 1 cut(s) 1048
Sse9I AATT 7 cut(s) 300, 546, 864, 965, 1068, 1080, 1229
SsiI CCGC 4 cut(s) 5, 270, 935, 953
SspMI CTAG 6 cut(s) 107, 146, 246, 288, 305, 1049
StyD4I CCNGG 3 cut(s) 73, 397, 872
TaaI ACNGT 5 cut(s) 60, 518, 544, 616, 1273
TaiI ACGT 2 cut(s) 43, 1145
TaqI TCGA 3 cut(s) 665, 740, 972
TaqII GACCGA 1 cut(s) 803
TasI AATT 7 cut(s) 300, 546, 864, 965, 1068, 1080, 1229
TatI WGTACW 1 cut(s) 761
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 4 cut(s) 8, 98, 428, 1025
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 3 cut(s) 139, 388, 949
TseFI GTSAC 1 cut(s) 878
TseI GCWGC 3 cut(s) 44, 434, 658
Tsp45I GTSAC 1 cut(s) 878
TspDTI ATGAA 7 cut(s) 600, 624, 825, 1124, 1169, 1182, 1292
TspGWI ACGGA 1 cut(s) 990
TspRI CASTG 3 cut(s) 139, 388, 949
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 1215
XapI RAATTY 3 cut(s) 300, 965, 1229
XbaI TCTAGA 1 cut(s) 304
XspI CTAG 6 cut(s) 107, 146, 246, 288, 305, 1049
ZrmI AGTACT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.